mRNA_Ecto-sp6_S_contig10.561.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.561.1
Unique NamemRNA_Ecto-sp6_S_contig10.561.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: D7FN87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN87_ECTSI)

HSP 1 Score: 486 bits (1250), Expect = 2.910e-170
Identity = 326/348 (93.68%), Postives = 327/348 (93.97%), Query Frame = 1
Query:    1 MASLAATADKPGGGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQSITLAAREAEREAPPDRGVESVGEGGGGEGWAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHLG 1044
            MASLAA A+KPGG    XXXXXXXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXX LLQSITLAAREAEREAPPDR VESVGEGGGGEG AAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQ LLGAEHARAKLVRLPQ           VRW TAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHLG
Sbjct:    1 MASLAAIAEKPGG----XXXXXXXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLQSITLAAREAEREAPPDRAVESVGEGGGGEGRAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQVLLGAEHARAKLVRLPQ-----------VRWHTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHLG 333          
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A6H5J5G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5G9_9PHAE)

HSP 1 Score: 389 bits (999), Expect = 4.100e-132
Identity = 250/294 (85.03%), Postives = 257/294 (87.41%), Query Frame = 1
Query:    1 MASLAATADKPGGGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQSITLAAREAEREAPPDRGVESVGEGGGGEGWAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQAS 882
            MAS+A T +KPGG         XXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNA R VDLVKVREFL+TALLYADSIAIAVG           XXXXXXX          PLLQSITLAAREAER+APPDRGVESVGE GGGE  AAGVVNVFEVTPWGKFTPALNALLGFASRDGA+LVMFQSLETTVGKDAVSGMEA+MGPADLVVGAALTGHAF+GGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQAS
Sbjct:    1 MASVAVTPEKPGG---------XXXXXXXXXXXXXXXXXXXXXXLCVCTRVHQNNAHRSVDLVKVREFLDTALLYADSIAIAVGTPPPSADQHGTXXXXXXXDSTP------PLLQSITLAAREAERKAPPDRGVESVGEEGGGERGAAGVVNVFEVTPWGKFTPALNALLGFASRDGADLVMFQSLETTVGKDAVSGMEAHMGPADLVVGAALTGHAFQGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQAS 279          
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A835Z311_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z311_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.700e-59
Identity = 140/314 (44.59%), Postives = 169/314 (53.82%), Query Frame = 1
Query:  133 LCVCTRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQSITLAAREAEREAPPDRGVESVGEGGGGEGWAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPA-DLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALL----------GAEHARAKLVRLPQASLRRRRFPRQVRWQTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041
            L   TRVHQN + RP+DL  V  F   AL YAD++ IAVG                              L SI   A+ AE+ A                  A G V V +VTPWG+FTPALNALL  A+  GA L++FQSLET      VS +EA + PA DLVVGAAL GH F  GE  E+TG TTPWNTLALW V +LA+LGFL V++G + GV AGVEEV AI+ LQ L                RAKL+ L  A+           W+  WED+ RR WH SKM+SKR+RA  QM+AL  + G V H+
Sbjct:   11 LVAATRVHQNQSSRPIDLRAVSAFFTGALAYADTVMIAVGTTDSAT------------------------LASIQQTAQAAEQAASR----------------APGTVLVLQVTPWGQFTPALNALLCAAASAGAPLILFQSLETAATPALVSALEAELDPAQDLVVGAALPGHDFSPGEH-EITGTTTPWNTLALWSVPQLARLGFLTVSDGAVAGVAAGVEEVAAISLLQQLRHSGGSGGGGSATRECRAKLLCLEGAT-----------WEAEWEDDARRSWHASKMASKRQRAAAQMAALCARPGRVLHI 272          
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A7S2V0C8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0C8_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.790e-50
Identity = 101/192 (52.60%), Postives = 127/192 (66.15%), Query Frame = 1
Query:  469 VTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAW-EDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041
            V PWG FTPALNALL  AS +G  L+ +QSLE  V ++    ++A M P D++VGAAL GH F  GE+VE  G T PWNTLALWD A+L+  GF+ ++EGLLPGV AGVEE TA+  LQ L   E + AKLVRL Q           + W T W EDEGR++WHE+KM+SK  R+  Q+ ALGI    V+H+
Sbjct:   26 VAPWGCFTPALNALLAHASSEGFGLISYQSLEMAVCREDYEELKAQMEPGDVLVGAALPGHIFSPGESVEAGGRTCPWNTLALWDTARLSLTGFIPLSEGLLPGVSAGVEEATALTLLQHLKP-ETSGAKLVRLSQ-----------IEWNTNWGEDEGRKQWHEAKMASKASRSSSQLQALGIPPAMVKHV 205          
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A7R9YER5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YER5_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.100e-40
Identity = 94/210 (44.76%), Postives = 127/210 (60.48%), Query Frame = 1
Query:  442 AAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMG--PADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGV--------PAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041
            A   + V  V PWG+F PAL+ALLG+A+ +G E+++FQS+E     + +  +  ++     DLVVG A+ GH F+ G  V LTG TTPWNTLALW+  +LAK GFLGVAEG +  V          GVEEVTAI+A Q+L  +  ARAKL+++P            + W+T ++D  RR WHE KM SK  RA  Q+S L +    VEH+
Sbjct:  123 AGSEIAVLPVQPWGQFVPALHALLGYAATEGYEMILFQSVEIETSPETLRALVDHLDLDGGDLVVGVAIQGHEFKPGTNV-LTGRTTPWNTLALWNTQELAKTGFLGVAEGWVRTVGDEGETVIAGGVEEVTAISAAQSLSPSRRARAKLLKVPG-----------ITWETQFKDAERRAWHERKMRSKLSRAQAQLSVLKLPTAYVEHI 320          
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A1Z5K272_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K272_FISSO)

HSP 1 Score: 141 bits (355), Expect = 6.000e-36
Identity = 93/202 (46.04%), Postives = 125/202 (61.88%), Query Frame = 1
Query:  454 VNVFEVTPWGKFTPALNALLGFA-SRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPG---VPA-GVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQT-AWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041
            ++V  VTPWG+F  ALNAL+ +A  R  A+ ++F S ET V +D +  + A++ P  LVVGA L GH  RG     L+G T+PWNTLA+WD+ KL+  GF  V++GLL      P+ GVEEV AIA LQ LLG E+A+AKLV L           + V WQ  +++D  RR+W E KM SK  RA +Q+  +G+  G V HL
Sbjct:   98 IHVLPVTPWGEFVSALNALVIYARKRLQADRILFLSAETVVDRDGIQELLAHLTPDTLVVGARLPGHVVRGECVTLLSGTTSPWNTLAVWDLHKLSLTGFQLVSDGLLTDDKEEPSFGVEEVVAIALLQKLLGTENAKAKLVTL-----------KHVDWQVDSFDDPERRKWQEEKMKSKEIRAQRQLDLIGLA-GKVHHL 287          
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A432R2Q5_9PROT (Uncharacterized protein n=1 Tax=Hydrogenimonas sp. TaxID=2231112 RepID=A0A432R2Q5_9PROT)

HSP 1 Score: 138 bits (347), Expect = 3.240e-35
Identity = 89/195 (45.64%), Postives = 115/195 (58.97%), Query Frame = 1
Query:  454 VNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGG--ETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTV 1032
            V +F + PW  +T  LN ++  A   GAE ++FQS+E TV  + V  +E ++    LVVGA L  H   G   E V LTG TTPWNTLALW++ KL   GFL V+ G LPG+P GVEEV  I+ LQ L   E   AK+V L           + V WQT W  + R  +H +KM+SK ERA+KQ+ ALGI+ G V
Sbjct:   59 VKLFHIHPWIGYTQPLNMIIEKALSVGAEKILFQSIEVTVSPEDVKRLEEHLDSKTLVVGAKL--HEMHGHVHEKVALTGWTTPWNTLALWNLQKLGLTGFLTVSSGNLPGIPGGVEEVVTISLLQTL-HPEVMDAKMVEL-----------KSVTWQTQWSCKEREAYHAAKMASKNERAEKQLKALGIEPGIV 239          
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: F0XX88_AURAN (TLC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XX88_AURAN)

HSP 1 Score: 140 bits (354), Expect = 3.550e-33
Identity = 121/303 (39.93%), Postives = 147/303 (48.51%), Query Frame = 1
Query:  145 TRVHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQSITLAAREAEREAPPDRGVESVGEGGGGEGWAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPAD-LVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKG---TVEHL 1041
            TR+H  +A RP DL KVR F++      D +AIAVG                            P ++  TL A   E  A    GV +   G      AA  V+V  V PWG F PALNAL   A+R G   ++F S+E          + A +  AD LV GAAL GH F  GE   LTGVTTPWNTLALW V  LA LGF  V EGL  G   GVEEV+AI AL  +  A+ ARA LV +P            V W T ++DE R  WH  KM+SK  R    ++ L  + G   TV H+
Sbjct:   16 TRLHVGDASRPPDLSKVRAFVDRVAPAVDRVAIAVG---------------------------VPGVEERTLEAL-GELAA----GVRAACAG------AAAPVDVVPVEPWGNFLPALNALTAHAARRGYGFILFASVEAAADPATARRLRAELDGADALVAGAALPGHDFSPGER-PLTGVTTPWNTLALWRVPSLALLGFPLVGEGLHAGAAGGVEEVSAIHALAKVHPAK-ARALLVAVPG-----------VAWATDFDDEKRAAWHAKKMASKESRPAAHLALLAAEAGPPTTVLHV 267          
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A2R5GIM4_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIM4_9STRA)

HSP 1 Score: 135 bits (341), Expect = 8.450e-33
Identity = 117/308 (37.99%), Postives = 155/308 (50.32%), Query Frame = 1
Query:  133 LCVCTRVHQNNADRP-VDLVKVREFLNTALLYADSIAIAVGPXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQSITLAAREAEREAPPDRGVESVGEGGGGEGWAAGVVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGMEAYMGPAD-LVVGAALTG-HAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLL-PGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQTAWE-DEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041
            L V TR+H   A +  VD+  +  FL  AL  AD++ IAVG                              ++++  AA+ + R+             GG +      V+V  V+PWGKF PALNAL  FA+  G + + FQSLE  V  D +  + A +   D LV GAA    H F  G  V L G T+PWNTLA+W V KLA  GF  VAEGL   G+ AGVEEV+ I+ LQ ++  + A+AKL       L  R   R   W+T ++ DE RR WH  KM SK +R   Q+ ALGI  G V+H+
Sbjct:  149 LVVATRLHFAEATKEDVDVKVLGGFLRCALAIADTVVIAVGASPGTVDK----------------------IRALVNAAQTSARQQHQ----------GGKQ------VHVLPVSPWGKFVPALNALTSFAANHGFKYICFQSLEVDVPPDVIRALVAQLQLGDTLVAGAAFPNDHLFSSGWHV-LNGRTSPWNTLAVWAVGKLALTGFSLVAEGLPHEGISAGVEEVSTISILQRIMPRQ-AKAKL-------LLHRALLRADTWRTDFQGDEARRDWHRKKMQSKIDRPAAQLDALGIDPGIVQHI 409          
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Match: A0A1Z5KL79_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL79_FISSO)

HSP 1 Score: 130 bits (328), Expect = 5.520e-32
Identity = 89/202 (44.06%), Postives = 121/202 (59.90%), Query Frame = 1
Query:  454 VNVFEVTPWGKFTPALNALLGFA-SRDGAELVMFQSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPG---VPA-GVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRFPRQVRWQT-AWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHL 1041
            ++V  VTPWG+F  ALNAL+ +A  R  A+ ++F S ET    + +  + +++ P  LVVG  L GHA RG     L+G T+PWNTLA+W++ KL+  GF  V++GLL      P+ GVEEV AIA LQ LLG E+A+AKLV L           + V WQ  ++ D  RR+W E KM SK  RA +Q+   G+  G V HL
Sbjct:  101 IHVLPVTPWGEFVSALNALVIYARKRLQADRILFLSAETVADHNDIQELLSHLTPDTLVVGGRLPGHAVRGECVTLLSGTTSPWNTLAVWNLHKLSLTGFQLVSDGLLTDDKEEPSFGVEEVVAIALLQKLLGTENAKAKLVSL-----------KHVDWQVDSFNDPERRKWQEEKMKSKEIRAQRQLDLTGLA-GEVHHL 290          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN87_ECTSI2.910e-17093.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J5G9_9PHAE4.100e-13285.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z311_9STRA2.700e-5944.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V0C8_9STRA3.790e-5052.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YER5_9STRA1.100e-4044.76Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1Z5K272_FISSO6.000e-3646.04Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A432R2Q5_9PROT3.240e-3545.64Uncharacterized protein n=1 Tax=Hydrogenimonas sp.... [more]
F0XX88_AURAN3.550e-3339.93TLC domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A2R5GIM4_9STRA8.450e-3337.99Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A1Z5KL79_FISSO5.520e-3244.06Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1479235..1482952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score491.1
Seed ortholog evalue4.2e-136
Seed eggNOG ortholog2880.D7FN87
Model size1047
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs28KV4@1,2QTBH@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_003370.1
Cds size1047
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348708.60423-CDS-Ecto-sp6_S_contig10:1479234..14793751682348708.60423-CDS-Ecto-sp6_S_contig10:1479234..1479375Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1479235..1479375 -
1682348708.6147885-CDS-Ecto-sp6_S_contig10:1480255..14804151682348708.6147885-CDS-Ecto-sp6_S_contig10:1480255..1480415Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1480256..1480415 -
1682348708.6246133-CDS-Ecto-sp6_S_contig10:1480809..14810001682348708.6246133-CDS-Ecto-sp6_S_contig10:1480809..1481000Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1480810..1481000 -
1682348708.6339192-CDS-Ecto-sp6_S_contig10:1481616..14819791682348708.6339192-CDS-Ecto-sp6_S_contig10:1481616..1481979Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1481617..1481979 -
1682348708.6435337-CDS-Ecto-sp6_S_contig10:1482760..14829521682348708.6435337-CDS-Ecto-sp6_S_contig10:1482760..1482952Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1482761..1482952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.561.1prot_Ecto-sp6_S_contig10.561.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1479235..1482952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.561.1

>prot_Ecto-sp6_S_contig10.561.1 ID=prot_Ecto-sp6_S_contig10.561.1|Name=mRNA_Ecto-sp6_S_contig10.561.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=349bp
MASLAATADKPGGGKGGQDGEQQTRQQQQQQQQQQQQQQRRRRRLCVCTR
VHQNNADRPVDLVKVREFLNTALLYADSIAIAVGPPPPPPTPSTDQHGTT
TTSTAAAAGSSPPLLQSITLAAREAEREAPPDRGVESVGEGGGGEGWAAG
VVNVFEVTPWGKFTPALNALLGFASRDGAELVMFQSLETTVGKDAVSGME
AYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGF
LGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQASLRRRRF
PRQVRWQTAWEDEGRRRWHESKMSSKRERADKQMSALGIKKGTVEHLG*
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mRNA from alignment at Ecto-sp6_S_contig10:1479235..1482952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.561.1 ID=mRNA_Ecto-sp6_S_contig10.561.1|Name=mRNA_Ecto-sp6_S_contig10.561.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3718bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1479235..1482952- (Ectocarpus species6 EcLAC_371)
ATGGCATCCCTGGCGGCTACCGCCGATAAACCGGGCGGCGGAAAGGGCGG ACAGGACGGAGAGCAGCAAACCAGACAACAGCAACAACAACAACAACAAC AACAACAACAACAACAACGGCGACGGCGGCGGTTGTGCGTGTGTACTAGA GTGCACCAGAACAATGCGGACCGTCCCGTGGACTTGGTCAAGGTGAGGAC TATCGGTAGAAGCCAGAATGAAACCATTGGAGGACTAGTCAGCGCGGAAT CATTATAGACTAATAGCTGACACATATTCGAATGGTTTGATTTCGGCTTC GAAACAAATTTGTCTTGGGGTTCGAGTGCCCCGACACTGCTGTCTTGTCA CTTCCCAGGAGGGCAGCTCCCCTCGCAGCGCTGTCGTCCATCCAATCGTT TATTTCGCTTCATCTCCCACTGTTCCAGGGTCTCAGACGAGTCATTACGT TACCCACACACGTGCCTCTGTCACAAGGCACGTACCTATAATGAATCTAC CAACAATGAGGGCGAAAGGTGCGTCAGTTGCATGTCCCGTTTGCAGTTTT CGGTAGCTTTTACCCGGCCCCGGCCCTCGCCCGAACCAAACACGCCCTCG AGGGCGGCTAGTCGAAAAGCTGGGAGCACGCAGTACGCTTGTCACCTCCT CCCCGTCTTGGACCATCCCGTCTCCCTCACCACGTGCACACGTACGTGCA CGAAGGTCTCTAGCCCAAAAGCATCGTCAACAGTCCACGCCCCTGTCCAT GCTCCCTTTCTCATGCACCCGCGCCTTTTTTCGGACCGCCTACGCAGGAT TATAAGAGTATCTAAAGAAAGAAAAGGAGGGGGCACGCAGACCTTATCCC TATCCCTAACCCTAACCCTAAAGCACGGATTGAATACTTTATCCCCATGT GTTTGCTTAACCAGTTTTGCTGCGTAGATTACTGATTTTTCATTCTGACA CGCCCAATGCAACCGACACTCAGGTGCGGGAGTTCCTCAACACGGCCTTG CTCTACGCAGACAGCATCGCCATCGCCGTAGGACCGCCGCCTCCCCCGCC GACGCCGTCAACGGATCAACACGGCACCACCACCACCAGCACCGCCGCCG CCGCCGGCTCCTCCCCACCGCTCTTGCAGTCCATAACTCTGGCCGCTAGG GAAGCAGAGAGAGAGGCGCCGCCCGACCGCGGCGTGGAGTCGGTCGGGGA GGGAGGAGGGGGCGAGGGGTGGGCGGCGGGCGTGGTGAACGTGTTCGAGG TGACGCCGTGGGGAAAGTTCACGCCGGCGCTGAACGCCCTGTTGGGGTTC GCCTCTCGCGACGGGGCTGAGCTTGTCATGTTCCAGGTGCGCTTAAACAC CAACACCCTACCGTACCACTGCTCTCTATTTTTTTCCAATCTTTGGAAAA AGTATTGTGCATGGTTCATGTAGTTTTGGATGAAAGCCCTACCCAACCAA CTGCCGCTGTCTGTATTTGGTGTTCTCTTTTGAAAAAATGTGGAGTATAG GTTGGGATTCCCTCCGCGCTATTGTACGTTTTGAGCTAACGACGCGCTTT GCGGAGCAGCAAACGAAACCGCTGAGGTATGGTGTTTATCTTCTCTTTGG TTTGCGTCAACCTAGCAAGTATCGCCTTGTGAACACCAAACGAGACGAGC AAGTCTCGCCCCGACACCCCCCCCTACACCACCCCCAAGCTCGCCGATAG AAAAGACGCGAGAAATGAGCAAGCGGTCCTGCAGACGCAGCGGCTCAACC CCAGGAAGGAAAACATCGCATGTCTGTCATCTTCCATACCAGCATGTATT TCCACACCTCTTATACCTGACGCACCCTCGGTATTTTCGACTCCTAGTAC GCGGGGGTGGCCTCGCTCCCCCCCCCATACTCCCTGACCCGGTTCGCCAC GCAATTTGGTCGTGCCGTGTGTGTACGTGTTTGTGCCTCGATCGGCGACC AGTCTCTAGAGACCACCGTAGGGAAGGACGCCGTATCGGGCATGGAGGCC TACATGGGGCCCGCAGATCTGGTCGTCGGCGCGGCCCTCACGGGACACGC CTTCCGGGGCGGGGAAACCGTGGAGCTGACGGGGGTCACGACGCCGTGGA ACACGCTGGCGCTCTGGGACGTGGCCAAGCTCGCCAAGCTAGGGTGCGCC GCCGGTTCATCGGTTGAGGATGGTCATTGTTTTTTCCGATTTGTGCGCGT GGGAGGTGCCCCCCATTTGTGTGTCTTTGTTGGCCCCCTCGCCCGTTTCC TTTTTACCGGTACTGACTGTCTGTTTGTCTCAGTCTCTCGTTCTTTCACC CTACCGTCTTCATCTGTGTGCTTGCCTGCCTTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCCTCCCTTCCTCCCTTCCCCTCCCTGCCTATCTCCA TATCCCTCACCTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGC CTTCGTTTTTATCGCTCTCCCATATCCCATGGTCCGCCACCCATCCCCCC CCTGCAACCACGATTTCTTTCTGTCCCCTCTCAACAGGTTCTTGGGCGTC GCCGAGGGGCTACTTCCCGGCGTTCCGGCGGGGGTAGAGGAGGTAACGGC CATTGCAGCGCTGCAGGCGTTGCTGGGGGCCGAGCACGCCCGCGCCAAGC TTGTGCGACTACCGCAGGCGAGTCTTCGTCGTCGTCGTTTTCCCAGAGTA CTCTTGAGGGTGGTTGATCGTGGCGGATCATTAAGTGGAAGCAGTATTCT AGCGCCCCCCTTTTTCGTTATTGTGTGGTCTCCACGAAAACGTGAGTTTT TGGGCGTGATGAAGCGATCATGACCAAAAGTAACGCGTGCGTGAAACATC TGTATACCTCCTTTTGTATGGTTTCCTTTCGCTCTCTGTCTGCTTGAACG GTAGACATATTTCGTGACGTTTGTTTCTGTCCCGAGCACACGTGTGGGGG CGTACTAGAGGGTGTGGGGGCGGGAGCGCCGTTCGATAGGGCACCTACAT AGGCCAGAGACCGCAGAGTATCACCCAACCAGTTGCAGACAGGTTCGCTT TCGTTGTCAATAGTCGGTGCTAATTATGTAGCACGTGTGATTGTGGAAAG AAAAGCAGATGTCGCTAGGGCCGTGTGCCAGGTGGTGGGGTTGTTGGTGC GCTGGGAACAGAGCATGGTATGGGCGGATGAGCTATGCCGCGTGAACCCA ACAAACCCCACGGCTTTGTTGCTCGGTGAAAGAGGAGATACAGACACAGG ACCGCTTTGCTTACCAGGGGAACCGCGTCGTGTCGAAGGTGTATGTACAC AGCCCCCGAGACCAATATAACCGCACAACGTCGCTCTGCCGCCTTGCTCT GTAGCTAGGTTATCGATGTTCGACGGCCACTGTTCACTGTTGTTGACCTT CTTGATCCGATGTTCGGCCGCGCACGTTTTTCCTTGGGTCTATGCTCGCA GGCTTAGGTTTACGGACGCGTGAACATGACTCAAATGTTCCGGACACACG CCGTCCGATAACGACATCGTGAGCATACGCCGCAATCTGATACTGTGCGC ACACATCTACAACGAACGTCTTGCGAGCAGGTGCGGTGGCAGACGGCATG GGAGGACGAGGGCAGAAGGCGGTGGCACGAGTCGAAGATGTCCAGCAAGC GCGAGAGGGCCGACAAGCAGATGTCGGCGCTGGGCATCAAGAAGGGTACT GTGGAACATCTCGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1479235..1482952-

>mRNA_Ecto-sp6_S_contig10.561.1 ID=mRNA_Ecto-sp6_S_contig10.561.1|Name=mRNA_Ecto-sp6_S_contig10.561.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1047bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1479235..1482952- (Ectocarpus species6 EcLAC_371)
ATGGCATCCCTGGCGGCTACCGCCGATAAACCGGGCGGCGGAAAGGGCGG
ACAGGACGGAGAGCAGCAAACCAGACAACAGCAACAACAACAACAACAAC
AACAACAACAACAACAACGGCGACGGCGGCGGTTGTGCGTGTGTACTAGA
GTGCACCAGAACAATGCGGACCGTCCCGTGGACTTGGTCAAGGTGCGGGA
GTTCCTCAACACGGCCTTGCTCTACGCAGACAGCATCGCCATCGCCGTAG
GACCGCCGCCTCCCCCGCCGACGCCGTCAACGGATCAACACGGCACCACC
ACCACCAGCACCGCCGCCGCCGCCGGCTCCTCCCCACCGCTCTTGCAGTC
CATAACTCTGGCCGCTAGGGAAGCAGAGAGAGAGGCGCCGCCCGACCGCG
GCGTGGAGTCGGTCGGGGAGGGAGGAGGGGGCGAGGGGTGGGCGGCGGGC
GTGGTGAACGTGTTCGAGGTGACGCCGTGGGGAAAGTTCACGCCGGCGCT
GAACGCCCTGTTGGGGTTCGCCTCTCGCGACGGGGCTGAGCTTGTCATGT
TCCAGTCTCTAGAGACCACCGTAGGGAAGGACGCCGTATCGGGCATGGAG
GCCTACATGGGGCCCGCAGATCTGGTCGTCGGCGCGGCCCTCACGGGACA
CGCCTTCCGGGGCGGGGAAACCGTGGAGCTGACGGGGGTCACGACGCCGT
GGAACACGCTGGCGCTCTGGGACGTGGCCAAGCTCGCCAAGCTAGGGTTC
TTGGGCGTCGCCGAGGGGCTACTTCCCGGCGTTCCGGCGGGGGTAGAGGA
GGTAACGGCCATTGCAGCGCTGCAGGCGTTGCTGGGGGCCGAGCACGCCC
GCGCCAAGCTTGTGCGACTACCGCAGGCGAGTCTTCGTCGTCGTCGTTTT
CCCAGACAGGTGCGGTGGCAGACGGCATGGGAGGACGAGGGCAGAAGGCG
GTGGCACGAGTCGAAGATGTCCAGCAAGCGCGAGAGGGCCGACAAGCAGA
TGTCGGCGCTGGGCATCAAGAAGGGTACTGTGGAACATCTCGGGTGA
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