mRNA_Ecto-sp6_S_contig10.553.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.553.1
Unique NamemRNA_Ecto-sp6_S_contig10.553.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: D7FN79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN79_ECTSI)

HSP 1 Score: 761 bits (1964), Expect = 9.460e-273
Identity = 418/433 (96.54%), Postives = 422/433 (97.46%), Query Frame = 2
Query:  293 IAPHWDARTXXXXXXXXXXXXXXXXXXRAACGARTAXXXXXXXXXXXXXXRPGANQPRSPLAMPMFIPIRTAPAPQTTGTSGGVGENRAAGTFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPRQGIKYACVDGRDPRCNYWLCKSCFKEWTEASGVDGFLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCKVGERFALDLRWLNVGMVEVLL 1591
            IAPHWDARTXXXXXXXXXXXXXXXXX R ACGARTAXXXXXXXXXXXXXXRPGANQPRSPLAMPMFIPIRT+PAPQTTGTSGGV ENR AGTFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKP QGIKYACVDGR+PR NYWLCKSCFKEWTEASGVDGFLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRI STSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRK+CR VKNPQ SAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFS EEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGL+NNRKVVGGWAHVKYDDRDGSK FQCKVGERFALDLRWLNVGMVEVLL
Sbjct:   95 IAPHWDARTXXXXXXXXXXXXXXXXXSRVACGARTAXXXXXXXXXXXXXXRPGANQPRSPLAMPMFIPIRTSPAPQTTGTSGGVRENRGAGTFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPGQGIKYACVDGRNPRWNYWLCKSCFKEWTEASGVDGFLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRIGSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKDCRRVKNPQTSAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSAEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLQNNRKVVGGWAHVKYDDRDGSKIFQCKVGERFALDLRWLNVGMVEVLL 527          
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KAW8_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW8_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 3.000e-108
Identity = 183/283 (64.66%), Postives = 209/283 (73.85%), Query Frame = 2
Query:  641 MSSSVSTGGRRKGQLREQAKSCHGCRTNKPRQGIKYACVDGRDPRCNYWLCKSCFKEWTEASGVDGFLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVK 1489
            MSSSVSTGGRRKGQL E+A++CH CRT  PRQGIK AC D     C YWLC+ C + WTE SG DGF CCLH G  WCPC +R RVR GPV  L+RS  AK+R V TS+FEFPA + P +T A TT SATPT G G TYSVCTSV L RVAVIK G++++CSR +C          +ATG TD  LPA C HAEVVL+AE SS PMP ADP+FS EEFR ALTT VP G F+E TTRAMH RADQAA++GVPVLVGLGST+YFGI DG EN+R V+GG   +K
Sbjct:    1 MSSSVSTGGRRKGQLTEEARTCHECRTKDPRQGIKNACGDSA---CCYWLCQKCLERWTEQSGRDGFQCCLHYGSLWCPCKNRTRVRTGPVAVLDRSTQAKTRHVRTSVFEFPAPSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDC----------SATGVTDPPLPARCPHAEVVLEAEGSSTPMPKADPVFSAEEFRQALTT-VPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGSTRYFGIKDGHENDRTVIGGLYTIK 269          
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5L8M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 5.510e-104
Identity = 191/368 (51.90%), Postives = 242/368 (65.76%), Query Frame = 2
Query:  446 PGANQPRSPLAMPMFIPIRTAPAPQTTGTSGGVGENRAAG-TFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPRQGIKYACV---DGRDPR-CNYWLCKSCFKEWTEASGVD-GFLCCLHRGKQWCPCNSRKRVRRGP-VPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCK 1528
            P   QPR  LAMP  +P+     PQTT +SGGVG  RAA  T  H +L  + + +S+ Q      G S+S STGGRRKGQL +QA +CHGCR NKP   +++AC    +G + R CNYW+C+ C   W +ASG   GF CCLH G++WCPC  R   +R   V  ++RS LA++R  ST ++EFP  T  + T A T  S TP  G G TYSVCTS    RVAVIK GD F+CSR +CR ++    S+AATG T SALP+ C HAEVV++AER+SMPMP AD L S  +F+ AL   VPAG F+  T  +M ARADQAA++G+P+LV +G+TKYF + DG + NR V+G W HVKYD R GSK FQCK
Sbjct:  176 PRRAQPRPALAMPQLLPV-----PQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGDEGGEARGCNYWVCQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERVSTKRSKTVSVVDRSRLAQNRQESTDVYEFPTTTS-SPTAATTAASPTPPSGPGTTYSVCTSNSQNRVAVIKAGDRFLCSRPDCRRIEG--LSSAATGDTASALPSRCAHAEVVIEAERTSMPMPKADALLSAGDFKSALDK-VPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQR-GSKVFQCK 533          
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 1.760e-100
Identity = 189/371 (50.94%), Postives = 242/371 (65.23%), Query Frame = 2
Query:  446 PGANQPRSPLAMPMFIPIRTAPAPQTTGTSGGVGENRAAG-TFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPRQGIKYACV---DGRDPR-CNYWLCKSCFKEWTEASGVD-GFLCCLHRGKQWCPCNSRKRVRRGP-VPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCKVGE 1537
            P   QPR  LAMP  +P+     PQTT +SGGVG  RAA  T  H +L  + + +S+ Q      G S+S STGGRRKGQL +QA +CHGCR NKP   +++AC    +G + R CNYW+ + C   W +ASG   GF CCLH G++WCPC  R   +R   V  ++RS LA++R  ST ++EFP  T  + T A T  S TP  G G TYSVCTS G  RVAVIK G  F+CSR +CR ++    S+AATG T SALP+ C HAEVV++AE++SMPMP AD L S  +F  AL   VPAG F++ T  +M ARADQAA++G+P+LV +G+TKYF + DG + NR V+G W HVKYD R GSK FQCK  +
Sbjct:   92 PRRAQPRPALAMPQLLPV-----PQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGDEGGEARGCNYWVRQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERISTKRSKAVSVVDRSRLAQNRQESTDVYEFPTTTS-SPTAATTAASPTPPSGPGTTYSVCTSNGQNRVAVIKAGARFLCSRPDCRRIEG--LSSAATGDTASALPSRCAHAEVVIEAEKTSMPMPKADALLSAGDFESALDK-VPAGTFNQRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQR-GSKVFQCKASD 452          
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5JH13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 3.760e-77
Identity = 144/209 (68.90%), Postives = 161/209 (77.03%), Query Frame = 2
Query:  905 GPVPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCKV 1531
            GPVP L+RS  AK+R V  S+FEFPAR+ P +T A TT SATPT G G T+SVCTSV L RVAVIK G++++CSR  CR V N Q SAAA G T S LPA C HAEVVL+AERSS PMP ADPLFS  EFR ALTT VP G F++ TTRAMH RADQAA+ GVPVLVGLGST+ F I DG ENNR V+G WAHVKYDD+ GSK FQCKV
Sbjct:  575 GPVPVLDRSTQAKTRHVRASVFEFPARSPPVVTAATTTLSATPTSGTGATHSVCTSVSLNRVAVIKAGNKYMCSRDECRRVGNVQTSAAAAGVTGSPLPARCPHAEVVLEAERSSTPMPKADPLFSAGEFREALTT-VPPGTFNKSTTRAMHTRADQAAQAGVPVLVGLGSTRCFEIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 782          
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KVV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 7.870e-59
Identity = 117/257 (45.53%), Postives = 162/257 (63.04%), Query Frame = 2
Query:  806 KEWTEASG-VDGFLCCLHRGKQWCPCNSRKR-VRRGPVPALERSALAKSRIVSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQASAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLF-SPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCKVGERFALDLRWLN 1567
            ++W  +S  +  F+CC+H  K+ CPC  RK+  R+GP   L+RS  A++R V TS+FE P+ T+   T A +TP+  PT   G TYS CTSVG  RV+V+++   ++CSR  C+ ++   A AAA G T+  L   C HA+VV+QA+ SS+PM  A  L  S EEF  AL  AVP G F++ T +A+ AR  +A E G+PVLV LG TK+F + DG   NR +VGGWAHVK ++  G    +CKVG+R +L L   N
Sbjct:    2 EKWLRSSAQLSHFMCCVHFEKEPCPCGKRKKNARKGPTSLLDRSTQARTRNVGTSVFELPS-TQTTPTTADSTPTPAPTPREGTTYSTCTSVGQNRVSVVESNGRYMCSRPECKTIETLSAKAAAGGDTECVLRRHCAHADVVVQAKASSVPMAGATALLPSAEEFLRALD-AVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEESGGKTTLRCKVGQRLSLILGLCN 256          
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KLI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI9_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.730e-46
Identity = 89/121 (73.55%), Postives = 96/121 (79.34%), Query Frame = 2
Query: 1169 AATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCKV 1531
            AATG T S LPA C   EVVL+ ERSS PMP ADPLFS  EFR ALTT VP G F+E TTRAMH RADQAA++GVPVLVGLGST+ FGI DG ENNR V+G WAHVKYDD+ GSK FQCKV
Sbjct:   10 AATGVTGSPLPARCPPVEVVLEVERSSTPMPKADPLFSAGEFREALTT-VPPGTFNESTTRAMHTRADQAAKEGVPVLVGLGSTRCFGIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 129          
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 5.610e-21
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 2
Query: 1250 MPMPTADPLFSPEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKVVGGWAHVKYDDRDGSKFFQCK 1528
            MPMP AD L S  +F+ AL   VPAG F+  T  +M ARADQAA++G+P+LV +G+TKYF + DG + NR V+G W HVKYD R GSK FQCK
Sbjct:    1 MPMPKADALLSAGDFKSALDK-VPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQR-GSKVFQCK 91          
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KNC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.330e-9
Identity = 63/128 (49.22%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  110 DSMQWWSQLVWGFNGNGAAATGAGGLSAGLFGSSSVGLGTGVGXXXXXXXXXXXXXXXAASIAPHWDARTXXXXXXXXXXXXXXXXXXRAACGARTAXXXXXXXXXXXXXXRPGANQPRSPLAMPMFI 493
            DSMQW S   WG   +GAAA   GGL  G+FGS+ +GL TG G               AASIAP      XXXXXXXXXXXXXXXX  R  CG   A              R GANQPRSPLAMP   
Sbjct:   29 DSMQWQSPTDWGPKRDGAAAASTGGLGTGVFGSNGMGLRTGTGRSVMGGAPASPANVSAASIAPRQGXXXXXXXXXXXXXXXXXXXLSRGTCGTTIALVSPTTVTAAGMATRTGANQPRSPLAMPKLF 156          
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Match: A0A6H5KC70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC70_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.970e-7
Identity = 83/154 (53.90%), Postives = 89/154 (57.79%), Query Frame = 2
Query:   92 KGGGGRDSMQWWSQLVWGFNGNGAAATGAGGLSAGLFGSSSVGLGTG------------VGXXXXXXXXXXXXXXXAASIAPHWDARTXXXXXXXXXXXXXXXXXXRAACGARTAXXXXXXXXXXXXXXRPGANQPRSPLAMPMFIPIRTAPAP 517
            +G GGRDSMQW S   WG N +GAAA G GGLS G+FGS+                    G               AASIAP        XXXXXXXXXXXXXXXX  +CG   AXXXXXXXXXXXXXX    NQPRSPLA+P FIPI TA AP
Sbjct:   54 EGRGGRDSMQWQSPTDWGPNRDGAAAAGTGGLSTGVFGSNGTXXXXXXXXXXXXXXXXXTGRSVMGGAPVSRANVSAASIAPR-----QGXXXXXXXXXXXXXXXXTTSCGTMIAXXXXXXXXXXXXXXXXXXNQPRSPLALPKFIPIGTASAP 202          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FN79_ECTSI9.460e-27396.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAW8_9PHAE3.000e-10864.66CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L8M0_9PHAE5.510e-10451.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Z2_9PHAE1.760e-10050.94CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JH13_9PHAE3.760e-7768.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVV8_9PHAE7.870e-5945.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLI9_9PHAE1.730e-4673.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ13_9PHAE5.610e-2158.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNC9_9PHAE2.330e-949.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC70_9PHAE2.970e-753.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1392737..1396416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1594
Hectar predicted targeting categoryother localisation
Exons4
Cds size1479
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348707.5817556-UTR-Ecto-sp6_S_contig10:1392736..13928281682348707.5817556-UTR-Ecto-sp6_S_contig10:1392736..1392828Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1392737..1392828 +
1682348707.5917196-UTR-Ecto-sp6_S_contig10:1394018..13940411682348707.5917196-UTR-Ecto-sp6_S_contig10:1394018..1394041Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 1394019..1394041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348707.6008024-CDS-Ecto-sp6_S_contig10:1394041..13948111682348707.6008024-CDS-Ecto-sp6_S_contig10:1394041..1394811Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1394042..1394811 +
1682348707.6096292-CDS-Ecto-sp6_S_contig10:1395473..13957311682348707.6096292-CDS-Ecto-sp6_S_contig10:1395473..1395731Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1395474..1395731 +
1682348707.6192944-CDS-Ecto-sp6_S_contig10:1395965..13964161682348707.6192944-CDS-Ecto-sp6_S_contig10:1395965..1396416Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1395966..1396416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.553.1prot_Ecto-sp6_S_contig10.553.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1394042..1396416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.553.1

>prot_Ecto-sp6_S_contig10.553.1 ID=prot_Ecto-sp6_S_contig10.553.1|Name=mRNA_Ecto-sp6_S_contig10.553.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=493bp
MQWWSQLVWGFNGNGAAATGAGGLSAGLFGSSSVGLGTGVGGSTMGGAPV
SPASMSAASIAPHWDARTGVGRLTLERAPESPTSLSRAACGARTAPVSPA
TVSVADIAPRPGANQPRSPLAMPMFIPIRTAPAPQTTGTSGGVGENRAAG
TFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGC
RTNKPRQGIKYACVDGRDPRCNYWLCKSCFKEWTEASGVDGFLCCLHRGK
QWCPCNSRKRVRRGPVPALERSALAKSRIVSTSIFEFPARTRPALTVART
TPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKNCRGVKNPQAS
AAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSPEEFRHALTTA
VPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLENNRKV
VGGWAHVKYDDRDGSKFFQCKVGERFALDLRWLNVGMVEVLL*
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mRNA from alignment at Ecto-sp6_S_contig10:1392737..1396416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.553.1 ID=mRNA_Ecto-sp6_S_contig10.553.1|Name=mRNA_Ecto-sp6_S_contig10.553.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3680bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1392737..1396416+ (Ectocarpus species6 EcLAC_371)
ATGCAGAGGGCGGTCGACCACGACGGGGCTGCGGCTCTGCTGGAGCAAGC CGCGCAACAATTCCGAGACCATGTGTGTATGGTAACAGTCAAGTCCAGGG TTCTTGTTTCAGTAGTCCTAGCGTTGGGACGTTTTGAACGTTCGAAATAG GCTACAAAATGGTTTTCTTGCTATTGCTTGGCTATAAAATGGCTTCCTTT AGGTTTCAGTGTAGGCCGCACAAGTGGTGCGCAACCTATGCTTCGACATG TATTGCTTGTCCTTGCATGCAGTTCTAAACTGCCACGTTTTGAATTGAGG GCGCCAAGTTTCAAACTGCCAAGTTCGTTGTGTCTGCACAGTCTGGTGCA GTCGTGCTGCAGCTCTCATCTTTGACCTCATGCTGGCAAGCTTCACCAGC AACTTGATCGAAAGGTGCTTGCTCGCTGCCATAGCAGCGAGCAGGAAACC TCGACACTGTTTTATATTGAAGCAGCTCTCCTCTGCTACGAAACCTCGCC CCTGTGCTGCTGGTACAGTGCATACATGTAGACTGTAAGCAAAGATATTC TGCCTGTATAGATCATTTTTGGTCTCCATCAGTCTACGTATAACGCGTGA GGAGCGCATGTGTAGGCAAGGGTCCCTCTCGTTGCCCCCCCCTTCTCCGT CGACTCTCTGAAAGTACCTGATATATGCATCCGTGGGTGAACATCTCGAC GGTAAACAAGTCCGTCCCTCCCCAGGGAGAAGCGCTAATGCAAGCAATTC GACACAACAGGAGGATATTAACGTGTGCGACGGAGCGTACAAGAGTGTCG TATTCCAAAACGACTTAGTCAGCGAGCTGCGTAGCGACTTGTACCTACAG CGGGTTAGTCGTTACAGGTTAGTCAGTACAGTGTACGGCAAATGTTTCAA TCCCCCACCACCTTACGGAGGTGTTCAAAAAGGCACAAGATAAGCCCCAT TTTTTCGTCGCGCTGTGGCCTCTCTCCGTCACCACGCTCTCAAATGAGTG CATCCACCTGATGGGACGCACTGCTGTACTTGAGCTTTCCATCTCCCCCC TGTCCTCCTGCATTGTGGCCCCAGGATCAATCTCTGGCATCATTGGGAAC CGTGAGCGGCATGGTCGAGCATGTGGGCTTACAACGTTCGGAGCAAGATG ACCAGGGCGGAGTGGAGCATAGAACAAACAGAATACGGCTAGGGGAGAAA CTTCGGTTCGGTGATCATGTTTTCTCGTCCCCACGGAGGTGTACTGGCTT CGCGTCTAACAGCTGTTCAGGTCGTCTGGAAGAGGGCGGGGGGGGCAGGG ACTCAATGCAATGGTGGTCCCAGCTGGTCTGGGGGTTCAACGGAAATGGA GCTGCGGCAACTGGTGCCGGCGGCCTTAGTGCGGGGTTGTTCGGCTCGAG CAGCGTGGGATTGGGCACGGGCGTTGGCGGATCAACCATGGGAGGCGCGC CTGTATCCCCGGCGTCTATGTCGGCCGCCAGTATCGCCCCTCACTGGGAC GCGCGCACGGGCGTTGGCAGATTAACCCTGGAACGTGCGCCAGAGTCCCC GACTTCATTGTCTCGGGCGGCGTGTGGTGCAAGGACGGCGCCTGTGTCTC CGGCCACCGTGTCGGTAGCCGATATCGCCCCTCGCCCGGGCGCGAACCAA CCGCGTTCGCCGCTTGCCATGCCAATGTTTATTCCGATACGCACGGCCCC AGCACCGCAGACCACAGGTACTAGTGGAGGTGTGGGGGAAAATAGAGCGG CGGGAACGTTTGTCCATGAAAACCTCAATTCATCCGTGGAGCCTGAGAGC AACAGACAGCTGGCGGCTGCCGTTCTCGGCATGTCGTCGAGCGTATCGAC AGGGGGGAGGCGAAAAGGCCAGCTACGTGAACAAGCCAAGAGCTGCCACG GGTGCAGGACGAATAAACCCAGGCAAGGCATCAAGTATGCTTGCGTGGAT GGCCGGGATCCGAGATGCAACTATTGGCTGTGCAAGAGTTGCTTCAAGGA ATGGACGGAAGCGTCTGGAGTTGATGGATTTTTGTGTTGCCTACACCGGG GAAAGCAGTGGTGCCCGTGCAACAGGTGAGGGATGCTTTCGTGTCAGGAT AGATCCTGTAACATCGCTCATACAGCATCTCGGTGATTCCAGTATTTCAG ACAGATACTCATAAGGACAGACATCCTTGAGCTCTTTCAAGAAATATGAA AAGATCCAGACAGAACCACAGAAAAAAAAATGGTTTGGCTTGGACACCGC CAATAGCCATTCCTCAAACACGACCTCCGCACTCACGTCCCGGGTCGCGT TGGCATCGATCGAATATCTCCTAGTCAAGCGAGAGACCCTTGGGTAGAAT GGATGGGGTGGGGTGAGTACTTCGGGAGTATGTGGAATATGGATTGTTGG ATGTAAATACCACCCGTGCACCTGAAGAACCATTCAGTTTGCTACATGCA TTATTTGCCAGTGCCGGAAGAACCAAAGGAACAAGGAACACACCTGGTAG TGGTATCTGCGCGGTTTAGAAATTCCCGAAAGAGGCAAGGGTATGACGCG TGGAACGGGAAATTTGTTCTTGTCCTTATACCGTCCTACAACGGCGAAGC CCGTTTTCACCCACCCTCTGTCTCTCGTACGTCGATCGACGGTACCCTGT CGAGCTTGATCTGTGCGTGGTGCCCACATTTGGTGCCCATCCACCCCGTA TCCCCCTTTCTGTCACGTTTCCTTCACCGCCTCAAAGCCGGAAAAGGGTG AGGAGAGGCCCCGTCCCGGCATTGGAGCGATCTGCGCTAGCAAAGTCGCG CATTGTGAGCACGAGCATTTTCGAGTTCCCGGCGCGGACACGTCCAGCCC TCACTGTCGCAAGGACAACTCCCAGTGCCACACCAACTGGGGGGGCGGGC AAAACATACTCGGTGTGCACATCGGTCGGCCTTCAGCGTGTGGCGGTGAT CAAAACTGGTGACGAATTCATTTGCTCACGGAAGAACTGCAGGGGGTGAG TGGGTGTACACGGAATTCGTGGCTGCAAGTTTGGCTAAAATGCCCTTTAA TATGCAGAGAGACGAGCCTGCTCGTTTGGGTTGACTTCGCTACCTGTGCG CTTTCGTTGAATACGTCACCAGATCGTGCGCGAAAGTACTTTTGCCGAAC TCTCCCACTTTCGTTTTTGGACATACCAACTTCTCACACTCGGCCCGATT ACGCTAATTGTGCCGCGTGTTTTTTGCAGCGTCAAGAATCCTCAAGCCTC AGCTGCAGCCACTGGTGGCACGGACTCTGCACTTCCGGCTCCTTGCTGCC ATGCAGAGGTCGTGCTCCAGGCAGAGAGATCATCTATGCCAATGCCGACA GCAGATCCCCTGTTTTCACCAGAGGAATTTCGACACGCATTGACCACGGC AGTGCCAGCAGGAGCGTTCAGCGAGGGCACCACCCGAGCTATGCACGCAC GCGCGGATCAGGCGGCGGAAGATGGCGTCCCGGTGCTTGTCGGCCTCGGG AGCACGAAGTACTTCGGGATAACGGACGGTCTTGAAAACAACCGCAAAGT GGTTGGAGGGTGGGCGCACGTGAAGTATGACGACAGGGACGGGAGCAAAT TTTTCCAGTGCAAGGTGGGCGAAAGGTTTGCACTCGACTTGCGGTGGTTG AATGTCGGCATGGTTGAGGTGCTTCTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1392737..1396416+

>mRNA_Ecto-sp6_S_contig10.553.1 ID=mRNA_Ecto-sp6_S_contig10.553.1|Name=mRNA_Ecto-sp6_S_contig10.553.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1479bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1392737..1396416+ (Ectocarpus species6 EcLAC_371)
ATGCAATGGTGGTCCCAGCTGGTCTGGGGGTTCAACGGAAATGGAGCTGC
GGCAACTGGTGCCGGCGGCCTTAGTGCGGGGTTGTTCGGCTCGAGCAGCG
TGGGATTGGGCACGGGCGTTGGCGGATCAACCATGGGAGGCGCGCCTGTA
TCCCCGGCGTCTATGTCGGCCGCCAGTATCGCCCCTCACTGGGACGCGCG
CACGGGCGTTGGCAGATTAACCCTGGAACGTGCGCCAGAGTCCCCGACTT
CATTGTCTCGGGCGGCGTGTGGTGCAAGGACGGCGCCTGTGTCTCCGGCC
ACCGTGTCGGTAGCCGATATCGCCCCTCGCCCGGGCGCGAACCAACCGCG
TTCGCCGCTTGCCATGCCAATGTTTATTCCGATACGCACGGCCCCAGCAC
CGCAGACCACAGGTACTAGTGGAGGTGTGGGGGAAAATAGAGCGGCGGGA
ACGTTTGTCCATGAAAACCTCAATTCATCCGTGGAGCCTGAGAGCAACAG
ACAGCTGGCGGCTGCCGTTCTCGGCATGTCGTCGAGCGTATCGACAGGGG
GGAGGCGAAAAGGCCAGCTACGTGAACAAGCCAAGAGCTGCCACGGGTGC
AGGACGAATAAACCCAGGCAAGGCATCAAGTATGCTTGCGTGGATGGCCG
GGATCCGAGATGCAACTATTGGCTGTGCAAGAGTTGCTTCAAGGAATGGA
CGGAAGCGTCTGGAGTTGATGGATTTTTGTGTTGCCTACACCGGGGAAAG
CAGTGGTGCCCGTGCAACAGCCGGAAAAGGGTGAGGAGAGGCCCCGTCCC
GGCATTGGAGCGATCTGCGCTAGCAAAGTCGCGCATTGTGAGCACGAGCA
TTTTCGAGTTCCCGGCGCGGACACGTCCAGCCCTCACTGTCGCAAGGACA
ACTCCCAGTGCCACACCAACTGGGGGGGCGGGCAAAACATACTCGGTGTG
CACATCGGTCGGCCTTCAGCGTGTGGCGGTGATCAAAACTGGTGACGAAT
TCATTTGCTCACGGAAGAACTGCAGGGGCGTCAAGAATCCTCAAGCCTCA
GCTGCAGCCACTGGTGGCACGGACTCTGCACTTCCGGCTCCTTGCTGCCA
TGCAGAGGTCGTGCTCCAGGCAGAGAGATCATCTATGCCAATGCCGACAG
CAGATCCCCTGTTTTCACCAGAGGAATTTCGACACGCATTGACCACGGCA
GTGCCAGCAGGAGCGTTCAGCGAGGGCACCACCCGAGCTATGCACGCACG
CGCGGATCAGGCGGCGGAAGATGGCGTCCCGGTGCTTGTCGGCCTCGGGA
GCACGAAGTACTTCGGGATAACGGACGGTCTTGAAAACAACCGCAAAGTG
GTTGGAGGGTGGGCGCACGTGAAGTATGACGACAGGGACGGGAGCAAATT
TTTCCAGTGCAAGGTGGGCGAAAGGTTTGCACTCGACTTGCGGTGGTTGA
ATGTCGGCATGGTTGAGGTGCTTCTTTAG
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