mRNA_Ecto-sp6_S_contig10.517.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.517.1
Unique NamemRNA_Ecto-sp6_S_contig10.517.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.517.1 vs. uniprot
Match: D8LSQ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSQ4_ECTSI)

HSP 1 Score: 369 bits (946), Expect = 6.680e-123
Identity = 248/361 (68.70%), Postives = 251/361 (69.53%), Query Frame = 1 
Query:  262 MSLAQSAVQGTXXXXXXXXXXXXXXXXVPPTMLTKSAIAYNDDDGDALGNDDDEPEPFPEPLPVRRSTAVNSAXXXXXXXXXXXXXXXXETFLFSNSTATSYSDTSTYDYCDSGDALCGTDDLCQECQSLTTSGGSLTCREAYPAAAASGDSSACEQLAATFCCYYGDASTAQRCLGNKPTALYWECVLTGAAFGCSLEDMPCYS----AAQTQPIPSPSPTEAATMAPVQFGSGGEMESVFTASPTGAPTTFDRGSSLAGTASPTPAAPIASEDGDGGEAPAATRSPVAGNDDTGSGGIGAGSGFNSAXXXXXXXXXXXXXXXXXXXXXXXXWSTATAVPRAVVTLGVTLFLAARHSAAK 1332
            MSLAQSAVQGT    XXXXXXX     VPPTMLTKSAIAYNDDDGDALGNDDDEPEPFPEP PVRRS     AXXXXXXXXXXXXXXXXE FLFSNST TSYSDTSTYDYCDSGDA CGTDDLCQECQSLTTSGGSLTCREAYPAAAASG+SSACEQLAATFCCYYGDASTAQRCLGN+PTALYWECVLTG AFGCSLEDMPCYS    AAQTQP                                                               GEAPAATRSPVAGNDDTGSGGIGAGSGFNSA                        WSTATAVPRAVVTLGVTLFLAARH+AAK
Sbjct:    1 MSLAQSAVQGTTTEAXXXXXXX-----VPPTMLTKSAIAYNDDDGDALGNDDDEPEPFPEPFPVRRS-----AXXXXXXXXXXXXXXXXEAFLFSNSTDTSYSDTSTYDYCDSGDAWCGTDDLCQECQSLTTSGGSLTCREAYPAAAASGNSSACEQLAATFCCYYGDASTAQRCLGNEPTALYWECVLTGPAFGCSLEDMPCYSGNSSAAQTQPXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------GEAPAATRSPVAGNDDTGSGGIGAGSGFNSAGTSSGGGDFDGAAEEAGDGAARVAWSTATAVPRAVVTLGVTLFLAARHAAAK 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSQ4_ECTSI6.680e-12368.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1016961..1021669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1335
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003010.1
Cds size1335
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348704.651927-CDS-Ecto-sp6_S_contig10:1016960..10170461682348704.651927-CDS-Ecto-sp6_S_contig10:1016960..1017046Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1016961..1017046 +
1682348704.6613762-CDS-Ecto-sp6_S_contig10:1020074..10208071682348704.6613762-CDS-Ecto-sp6_S_contig10:1020074..1020807Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1020075..1020807 +
1682348704.6709144-CDS-Ecto-sp6_S_contig10:1021153..10216691682348704.6709144-CDS-Ecto-sp6_S_contig10:1021153..1021669Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1021154..1021669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.517.1prot_Ecto-sp6_S_contig10.517.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1016961..1021669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.517.1

>prot_Ecto-sp6_S_contig10.517.1 ID=prot_Ecto-sp6_S_contig10.517.1|Name=mRNA_Ecto-sp6_S_contig10.517.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=445bp
SNCCAGSGCFRASQLCIYHFFCGWRETVRSREIEAERPAMGSGAERSTAT
TAPHRQRSWGPAAAATSMWRGADSLLLLTLLLTTRPTMSLAQSAVQGTTT
EAYSSSSSSSSSSDVPPTMLTKSAIAYNDDDGDALGNDDDEPEPFPEPLP
VRRSTAVNSAAAAYNDDDGEALGHDDETFLFSNSTATSYSDTSTYDYCDS
GDALCGTDDLCQECQSLTTSGGSLTCREAYPAAAASGDSSACEQLAATFC
CYYGDASTAQRCLGNKPTALYWECVLTGAAFGCSLEDMPCYSAAQTQPIP
SPSPTEAATMAPVQFGSGGEMESVFTASPTGAPTTFDRGSSLAGTASPTP
AAPIASEDGDGGEAPAATRSPVAGNDDTGSGGIGAGSGFNSAGTSSGGGD
FDGAAEGAGDGAARVAWSTATAVPRAVVTLGVTLFLAARHSAAK*
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mRNA from alignment at Ecto-sp6_S_contig10:1016961..1021669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.517.1 ID=mRNA_Ecto-sp6_S_contig10.517.1|Name=mRNA_Ecto-sp6_S_contig10.517.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4709bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1016961..1021669+ (Ectocarpus species6 EcLAC_371)
AGTAACTGCTGCGCGGGATCGGGTTGCTTTCGGGCCTCTCAGCTGTGTAT
ATATCATTTCTTCTGTGGCTGGAGAGAGACTGTAAGGTGAGAACACCGCT
CAGCGTTTGCGGCCAACTGCCGTCGATGTCGCTTCAGCTACCGCTTGGTG
CAACACCGAACGAATAGCCGTTGGCGGTCATTGGTCGTGCCTCTGACTAT
TGTGTATTTTAGTCGTATCTTCGCTGCTGGGCACATGGATGTGCAGGAGA
GCTCGTACGGAAGGTTGCTAACTCCAGCGGCTCATGTGGCATCATCGCCA
CTGAATTTCGTTTGCACACGAAGCGCGCTGTCCATGCTCTGCCGCAGGCC
ACGCTACTACTGTTGTTGGAAAAAAGGAAAGGTGCATCATCATGTGTTGT
GTTTGTTCGAATTTTCGTGGGAAAAGCCGGCCTCGTTGTGTCTGTGATCG
GTAGCACCGGCCGTGAGTGAACTTCACCTCTTTAGCGCTTCAATCCGCCG
TGCTAACGTGATGTTGTAAGAGAGTCAACAACGGTGGGGTCAAGCATTTT
CCAGAAGCTTTGCCGCTTTGTGCCACAACAGCTGAATATCGTCCAGCGTC
ATCTACTACTGCTGTATGCAAAAAGTCGCCGTTGGTCTTATTTTTCGGTG
TGCTGGTCGTGCGTGTGGTCGTGCGTGTCCATTTACAGCCCTGCAGCTAC
AGCAGTAGCTGGCAGGGGCAATTTACGCGCTAGATGTTTCGCCCCCCGCA
CAACATTATGAGCCGTGTGCGGCTCACCATCCTGCATCTCTGTCCACACA
AACCGTCTCCGAGTGGCTCCTCGAGATGTTTTTTCAACAAAAGTGTGGCC
TGCTTTGTGTGGTCGTGTCGGATCGTTCACGTATGTAGTAAAATACCGAA
CAGAGGTGATAGCCACCAACAACATATGCCGACGACTCACAGACGACGCG
TTACTGCTGTATCGAAATTGGTTGCCAAACACGTTGCTCCACAGACGCGA
AACTATTCTTCGTTGTAACATACATAGACCTACAGTAGATGACTGCTGCA
CACAGCAATATGTTCTCTCTCACTCTTAGAGTAGCCCACGTGCTGCTCGG
CTTTTTGGTGTTCTTGTGGTTGGAGCGAGATGCACAATCTCATTCATACG
TCTTGCCCATACCAATGTACTGTGTAGACGAAACGGTAAACTGAATTACA
AGCCAGGAGAAAGAAGGCTGTACAACTGCTGGATGTACTGCTTTTACCAA
ACGGTAACCATGTACCCATCATATGAGCAACAGGAAGAGCTTGACACACC
TACCTGCAGACTCCTATTATTCCGTCTTTATGTTTGTTGAAGCAAAGTCC
GAGGGATGGATGATGGATGATGCAGCATCGTAATTCCAAGCGTGACAGCG
CTCTTTGGCGCCTTGAAACGTCTGGCTACAGCTGGTTTAAGGCCGTCTTC
TTGTCATCCTGGCACCGACCGCCTTTAACACTGGGGATTCTATATTGGAA
GAGTGGCATGACAGACGACCCTTGAAATAATTTTCTTCCGAGTTTGGAGC
GGTGTTGTCGTGCAGGGCGCCTCTCTCTCTCGACGAACGATTACACACAG
CAGATAGATGGCAAACGTACCTAAAGAAGGTCGGGGGGTGATTTTTTTTT
TTTTATGTATTGCCAAACGAAACGGAACATCAGGCAAACAATATATATCT
ATGCATACACACACAGAAAGACTTTTGTTGTTGTTGTTGGCTTCACATTA
AATTCTTAAGGAATAATAAAAACACACACAGAAAGACTACCCATTCGAGA
TATACCCACAGTCGAACGGGATGTGGTGGAGTCTTTTCAGTGAGTGGAGG
GAAACCGGCTGGGTACTGGACTTATTTCGAGTCTTTTTAAGTCTATACAC
TGATGATTTATACCAGTGATGCCAGCTGGTGCTAAGTACAAAAACATCTG
TATAGGTAACTTACATTTTACAATACATCCCCTGTAGTTCTCTACTGGGT
CAACGACAAAATATCGGGGAGAAGCCCTCCGTTGTGCCGTGTATTGTAAG
TTGTAACCTTCACAGGGGACACGGCGCAGTGTCTATTGACAGCTTGCTGG
TTTATTAGACATATTAGGAATAACATTGTAAAATTCATGGAAGGTGGAAC
AAAATCTACAGCAGTACATCATCAGCTCTACATCACTCGTTTTTCAAATC
TACAGATTTTTGAATTTCACGGACAGCAGCAGGTGTTTCCCGCCGTTTTT
TTTAAAAATTCTTGTACAGAAGCGATATCAACCTCTACTCTACTACTGCT
GTAGTTTTTCTTTCCCAATCCTCGCAAATCCTCGCACAACCCGTAGTGAT
GACTCCGATGTGCCGAATCAGACCGTATACCCTCTGGCAGGCTCACCAGA
ATCCATGTCGGATGGTACCGTGTTTTGTGATGGACCGCCTACGCAGGATT
TCAAGAGTATCAAGAAAAAAAAAGGCGAGGGGGCACGCAGACCCCAACCC
TAACCTAACCCTTAAGCACGGATTGAATACTTTATCCCATGTGTTTGCTT
AATCAATTTTGCTCTGAGTAGACTCGTTTTCATTACTATTACGGTTGCCC
CCCTTTCCATGAAGCAGTAGTGTTTGTGATTGACAGAAACGAAATATTCA
GGATAGGGCAGAAGTGACGAACTATTTTATTTTTCGAGTGCATGCACTCT
TTGGGTAGTTGGCTTGCGAGCACGGAAGGCATTCACGTCAGTTAGACCAT
CACGGACACCATAAGGTACTGAGGGGAGACCGGTTAAAATGTGGAGACGA
CAAGGACAACAACGCACGCATATACCACACTGCCGAAGTTTCGAGCTGCA
ATAATCGTAACACAACAACATGAGGTGCCCTGTGGGTGACGGGCGGGAGA
AGACAACCTGGTTGGGTCGATCTTCAAAATCCGACTATGTATCCCGGGAG
GTGCAGGAACCGATGTTTGTACTTGCAACGTAGTTTCTTGTGTCGGAAAC
TCCGAAATTCCAACAACGGTGAATCTTGTGTGCACGATTCAAATATTCGG
CGAAGATTTCAACGTATTGCATTGCGGGTGCTGCATATGCGAACGATACT
TTTTTTCTTCGCAGGTCTCGGGAGATTGAAGCAGAGCGACCAGCAATGGG
GTCGGGAGCGGAGCGGAGCACAGCAACAACCGCGCCCCACCGGCAGCGTT
CGTGGGGGCCAGCAGCAGCAGCAACAAGCATGTGGCGAGGGGCGGATTCC
CTCCTCCTCCTGACGCTGCTGCTTACCACACGCCCCACCATGAGCTTGGC
CCAATCGGCAGTTCAAGGAACCACCACCGAAGCCTATTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCGGATGTTCCGCCAACAATGCTGACGAAGTCCGCC
ATCGCGTACAACGACGACGACGGCGACGCCCTGGGGAACGACGACGACGA
ACCGGAACCGTTCCCCGAACCGCTCCCCGTCAGGCGCAGCACCGCCGTCA
ACAGCGCCGCCGCCGCGTACAACGACGACGATGGCGAGGCGTTGGGCCAC
GACGACGAAACTTTCCTCTTCAGCAACAGCACCGCCACCAGCTACTCCGA
CACGTCCACCTACGACTACTGCGACAGCGGCGACGCCTTGTGCGGAACGG
ACGACCTCTGCCAAGAGTGTCAGTCACTCACCACCTCCGGCGGGAGCTTG
ACGTGCCGGGAGGCCTACCCCGCGGCCGCCGCGAGCGGCGACAGCAGCGC
GTGCGAGCAGCTCGCTGCCACGTTCTGCTGTTACTACGGAGACGCCTCCA
CGGCCCAGCGCTGCCTGGGCAACAAACCCACGGCCCTCTACTGGGAGGTG
GGCGCGCCCATATTTTCGAGCGGGGGGGGGGGGTGATCATGAGCGGAGGG
CGTGGCTCTCGTGAGGCTCTCAGGCTATGCTTGTTACTCGGGCGATCGAG
GTCACCTGCCCGCAAACCTGAGTCGGCTGTCTTTAGAAATTATACGTGCA
ATCAAAGAAAGACTGGTGTGCCCATTCGGGATAATACCACAGTCGAAGGG
CACGTGTTGGAGTGAATGGGATGTTTTTGCTCGGCCGAAAACATTTTGGC
ATTGCATAGCAACGTTCCGCTCGGTATTTCGGAGCTCATCCCCCCTCTCC
CTTCCGcccCCCCCGCCGCCTCCCCCCCCCAACAAAAAAATAGTGCGTCC
TCACCGGCGCCGCTTTCGGCTGCTCTCTGGAAGACATGCCGTGCTACAGC
GCCGCGCAGACCCAACCCATCCCCAGCCCGTCTCCCACAGAGGCGGCGAC
GATGGCGCCCGTGCAGTTCGGTTCCGGAGGTGAGATGGAAAGCGTCTTCA
CCGCCTCCCCAACCGGCGCGCCTACGACATTCGATCGAGGTTCGTCCTTG
GCAGGGACCGCTAGCCCAACGCCCGCTGCTCCGATCGCTTCAGAAGACGG
TGACGGCGGCGAGGCTCCGGCGGCGACTCGATCGCCGGTGGCGGGCAACG
ACGACACTGGAAGCGGCGGCATTGGTGCTGGTAGCGGCTTCAACTCGGCA
GGCACCTCGTCGGGCGGGGGCGACTTCGACGGGGCTGCGGAGGGGGCGGG
GGACGGCGCCGCTCGCGTTGCTTGGTCCACAGCAACGGCCGTGCCCCGCG
CGGTTGTTACCCTTGGCGTCACCCTTTTCCTGGCGGCGAGGCATTCTGCT
GCAAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1016961..1021669+

>mRNA_Ecto-sp6_S_contig10.517.1 ID=mRNA_Ecto-sp6_S_contig10.517.1|Name=mRNA_Ecto-sp6_S_contig10.517.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1335bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1016961..1021669+ (Ectocarpus species6 EcLAC_371)
AGTAACTGCTGCGCGGGATCGGGTTGCTTTCGGGCCTCTCAGCTGTGTAT
ATATCATTTCTTCTGTGGCTGGAGAGAGACTGTAAGGTCTCGGGAGATTG
AAGCAGAGCGACCAGCAATGGGGTCGGGAGCGGAGCGGAGCACAGCAACA
ACCGCGCCCCACCGGCAGCGTTCGTGGGGGCCAGCAGCAGCAGCAACAAG
CATGTGGCGAGGGGCGGATTCCCTCCTCCTCCTGACGCTGCTGCTTACCA
CACGCCCCACCATGAGCTTGGCCCAATCGGCAGTTCAAGGAACCACCACC
GAAGCCTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGGATGTTCCGCC
AACAATGCTGACGAAGTCCGCCATCGCGTACAACGACGACGACGGCGACG
CCCTGGGGAACGACGACGACGAACCGGAACCGTTCCCCGAACCGCTCCCC
GTCAGGCGCAGCACCGCCGTCAACAGCGCCGCCGCCGCGTACAACGACGA
CGATGGCGAGGCGTTGGGCCACGACGACGAAACTTTCCTCTTCAGCAACA
GCACCGCCACCAGCTACTCCGACACGTCCACCTACGACTACTGCGACAGC
GGCGACGCCTTGTGCGGAACGGACGACCTCTGCCAAGAGTGTCAGTCACT
CACCACCTCCGGCGGGAGCTTGACGTGCCGGGAGGCCTACCCCGCGGCCG
CCGCGAGCGGCGACAGCAGCGCGTGCGAGCAGCTCGCTGCCACGTTCTGC
TGTTACTACGGAGACGCCTCCACGGCCCAGCGCTGCCTGGGCAACAAACC
CACGGCCCTCTACTGGGAGTGCGTCCTCACCGGCGCCGCTTTCGGCTGCT
CTCTGGAAGACATGCCGTGCTACAGCGCCGCGCAGACCCAACCCATCCCC
AGCCCGTCTCCCACAGAGGCGGCGACGATGGCGCCCGTGCAGTTCGGTTC
CGGAGGTGAGATGGAAAGCGTCTTCACCGCCTCCCCAACCGGCGCGCCTA
CGACATTCGATCGAGGTTCGTCCTTGGCAGGGACCGCTAGCCCAACGCCC
GCTGCTCCGATCGCTTCAGAAGACGGTGACGGCGGCGAGGCTCCGGCGGC
GACTCGATCGCCGGTGGCGGGCAACGACGACACTGGAAGCGGCGGCATTG
GTGCTGGTAGCGGCTTCAACTCGGCAGGCACCTCGTCGGGCGGGGGCGAC
TTCGACGGGGCTGCGGAGGGGGCGGGGGACGGCGCCGCTCGCGTTGCTTG
GTCCACAGCAACGGCCGTGCCCCGCGCGGTTGTTACCCTTGGCGTCACCC
TTTTCCTGGCGGCGAGGCATTCTGCTGCAAAGTAG
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