mRNA_Ecto-sp6_S_contig10.514.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.514.1
Unique NamemRNA_Ecto-sp6_S_contig10.514.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.514.1 vs. uniprot
Match: D8LSQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ7_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.540e-58
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 1 
Query:   70 MSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWTKDSGPQARRRARVCRASRVPALHAREVLWILPASMLNATSDSLQLSNLQLLSFVGANFNDSLSDVALPRGLKGIII 408
            MSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLW KDSGPQARR ARVCRASRVPALHAREVLWILPASMLNATSDSL+LSNLQLLSFVGANFNDSLS VALPRGLKGIII
Sbjct:    1 MSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSARVCRASRVPALHAREVLWILPASMLNATSDSLKLSNLQLLSFVGANFNDSLSGVALPRGLKGIII 113
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BLAST of mRNA_Ecto-sp6_S_contig10.514.1 vs. uniprot
Match: A0A6H5KRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT6_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 4.570e-39
Identity = 80/97 (82.47%), Postives = 85/97 (87.63%), Query Frame = 1 
Query:    1 GSSRCLDAFVVALNETCHEGKCIMSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWTKDSGPQARRRARVCRASRVPALHARE-VLWILPASML 288
            GSSRCLDAF+VALNETCHEGKCI STTALQLASLQFCVACRSAS VRLRIDTDTPR+LW KDSGPQARR A + RASRVPALH  E V W  P+S+L
Sbjct:    3 GSSRCLDAFIVALNETCHEGKCITSTTALQLASLQFCVACRSASPVRLRIDTDTPRYLWAKDSGPQARRSAMIRRASRVPALHTSENVAW--PSSLL 97
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BLAST of mRNA_Ecto-sp6_S_contig10.514.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.060e-15
Identity = 58/136 (42.65%), Postives = 72/136 (52.94%), Query Frame = 1 
Query:   28 VVALNETCHEGKCIMSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWTKDSGPQARRRARVCRAS--------RVPALHAREVLWILPASMLNATSDSLQLSNLQLLSFVGA--NFNDSLSDVALPRGLKGII 405
            +VALNET    +  +ST  LQLAS++FCVACRS ST+ L ++  TPRHLW      Q+                  RVP    REV W LP SML+  S      NL+ +SF  A     DS   VALPRGLK ++
Sbjct:    1 MVALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDA-FKNLECMSFSDAVERSGDSFDGVALPRGLKSVV 135
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BLAST of mRNA_Ecto-sp6_S_contig10.514.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.820e-13
Identity = 56/132 (42.42%), Postives = 75/132 (56.82%), Query Frame = 1 
Query:   13 CLDAFVVALNETCHEGKCIMSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWTKDSGPQARRRARVCRASRVPALHAREVLWILP--ASMLNATSDSLQLSNLQLLSFVGANFNDSLSDVALPRGLKGI 402
            CL+A +VALNET        ST   QLASL+FC+ACR+  T+ L++D+ TPR L      P    + R+C  +RVP L AR V W +P  A + N+    +   +L+   FV A F DSL  VA PR LK +
Sbjct:   12 CLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPK-RLC-GTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLE---FVRA-FEDSLEAVAWPRRLKTV 137
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BLAST of mRNA_Ecto-sp6_S_contig10.514.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.670e-13
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 1 
Query:   13 CLDAFVVALNETCHEGKCIMSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWTKDSGPQARRRARVCRASRVPALHAREVLWILPASMLNATSDSLQLSNLQLLSFVGANFNDSLSDVALPRGLK 396
            CL+A +VALNETC       ST  LQLASL FC+ACR+  TV L +D   PR L      P    + R+C  +RVP L +R V W +P +     +    +++++ L F G  F DSL  V  P  L+
Sbjct:   51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPK-RLC-WTRVPRLRSRRVTWNMPTAA-KLRTPIFAMTDMEYLEF-GDAFGDSLEAVPWPEHLR 174
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BLAST of mRNA_Ecto-sp6_S_contig10.514.1 vs. uniprot
Match: A0A6H5KSG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.180e-12
Identity = 42/51 (82.35%), Postives = 43/51 (84.31%), Query Frame = 1 
Query: 1342 AFPIPAGDFSXXXXXXXXXFVCYSDDVLPAVPGVEVCRVQPRVGRWPLHGG 1494
            A P P GD SXXXXXXXXX  CYSDD LPAVPGVEVCR QPRVGRWPL+GG
Sbjct:   31 AQPGPTGDLSXXXXXXXXXXXCYSDDQLPAVPGVEVCRAQPRVGRWPLYGG 81
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BLAST of mRNA_Ecto-sp6_S_contig10.514.1 vs. uniprot
Match: A0A6H5JF56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF56_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 9.050e-12
Identity = 52/123 (42.28%), Postives = 68/123 (55.28%), Query Frame = 1 
Query:    1 GSSRCLDAFVVALNETCHEGKCIMSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWTKDSGPQARRRARVCRASRVPALHAREVLWILPASMLNATSDSLQL-SNLQLLSFVGANFNDSL 366
            G +RCLDAFVVALN++C   K   S   LQLASL FCVACR+     L +D  TP  LW    GP       +   +RVPA+  REV+W      L    D + L S+L+ ++F G +FN  +
Sbjct:   32 GLNRCLDAFVVALNQSCDGKKWYTSIAGLQLASLAFCVACRNVLAPCLTVDKGTPLRLWC---GPCTTPLEVLTTVTRVPAIRVREVVW-----KLTERKDGIALPSSLRRITF-GRDFNQRI 145
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BLAST of mRNA_Ecto-sp6_S_contig10.514.1 vs. uniprot
Match: A0A6H5K4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.300e-11
Identity = 55/135 (40.74%), Postives = 73/135 (54.07%), Query Frame = 1 
Query:    4 SSRCLDAFVVALNETCHEGKC-IMSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWTKDSGPQARRRAR---VCRASRVPALHAREVLWILPASMLNATSDSLQLSNLQLLSFVGANFNDSLSDVALPRGLK 396
            SSRCL+AF VAL +TC + +   +STT LQLASL FC+ACR + T+ L +D   PR L     G +A         C  SRVP  HAREV W    S +  ++    L+ +      G  FN ++  VA PR L+
Sbjct:   27 SSRCLEAFRVALQQTCLDRESWYVSTTQLQLASLPFCLACRDSVTLCLTVDDSIPRRLLADVGGNEAVVAPAGPCQCGRSRVPRFHAREVTWH-RQSCVELSASIYALAEVDFFILDGG-FNRAIGAVAWPRKLR 159
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BLAST of mRNA_Ecto-sp6_S_contig10.514.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.550e-11
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:    1 GSSRCLDAFVVALNETC--HEGKCIMSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLW--TKDSGPQARRRARVCRASRVPALHAREVLWILPASMLNATS 300
            G+S+CLDAFVVALN+ C   E +  +ST  LQL SL+ C ACR   T+ +R+   TP  LW  +++      R  +VC +SRVP + A  + W LP  +L   S
Sbjct:    5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRS 108
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BLAST of mRNA_Ecto-sp6_S_contig10.514.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.830e-11
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    7 SRCLDAFVVALNETCHEGKCIMSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWTKDSGPQARRRARVCRASRVPALHAREVLW 267
            S CL+A V+ALNETC+      ST  LQLASL+FCVACR+  T+ L++D   PR L  +   P       +CR +RVP L AR V W
Sbjct:  111 SSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPEL-LCR-TRVPRLRARRVTW 195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LSQ7_ECTSI1.540e-5896.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRT6_9PHAE4.570e-3982.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG83_9PHAE4.060e-1542.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE1.820e-1342.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF9_9PHAE7.670e-1339.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG0_9PHAE1.180e-1282.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF56_9PHAE9.050e-1242.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H1_9PHAE2.300e-1140.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNI6_9PHAE2.550e-1142.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI2.830e-1148.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:976459..977955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1497
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_002970.3
Cds size1497
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348704.6244042-CDS-Ecto-sp6_S_contig10:976458..9779551682348704.6244042-CDS-Ecto-sp6_S_contig10:976458..977955Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 976459..977955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.514.1prot_Ecto-sp6_S_contig10.514.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 976459..977955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.514.1

>prot_Ecto-sp6_S_contig10.514.1 ID=prot_Ecto-sp6_S_contig10.514.1|Name=mRNA_Ecto-sp6_S_contig10.514.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=499bp
GSSRCLDAFVVALNETCHEGKCIMSTTALQLASLQFCVACRSASTVRLRI
DTDTPRHLWTKDSGPQARRRARVCRASRVPALHAREVLWILPASMLNATS
DSLQLSNLQLLSFVGANFNDSLSDVALPRGLKGIIIGGRFNRSVENVAWP
SSLLQLTFGYEFNQPIDNVTWPKSLMQLTFGNRFNRPLFSVNWPASLQQV
ALGDHFDQPLHGVSWPPDLRVLSFGLLFNQRVDAVAWPTSLQELAFGWSF
DHSVDEAKWPASLKKLSFGGGFNKGLDRMVWPASLQQLVTGSSFDQQIDQ
ITWPLSVKVIVLGSKFNKCIDRVSFPTFLEELTFGQHFDEALDRVKWPSS
LQQLTLGWNFNQGLLAVVWPVALKKLVLGGRFNQPIAGVRWPPSLQELVF
SHMFNQPVDVCAAWPASLRKLTFGQDFRKSIHGVAWPKSLQYLRFGQAFP
IPAGDFSWPASLRQLTFVCYSDDVLPAVPGVEVCRVQPRVGRWPLHGG*
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mRNA from alignment at Ecto-sp6_S_contig10:976459..977955-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.514.1 ID=mRNA_Ecto-sp6_S_contig10.514.1|Name=mRNA_Ecto-sp6_S_contig10.514.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1497bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:976459..977955- (Ectocarpus species6 EcLAC_371)
GGCTCTAGCAGGTGCTTGGACGCTTTCGTTGTCGCCCTCAACGAAACCTG
CCACGAGGGAAAATGCATCATGTCGACCACGGCGCTCCAGCTCGCGTCGC
TGCAGTTCTGCGTGGCTTGCCGAAGTGCATCGACCGTTCGCCTAAGGATC
GACACGGATACACCTAGACACTTGTGGACCAAGGATTCTGGACCTCAGGC
TCGACGCCGCGCGAGGGTTTGCCGTGCGTCTCGCGTGCCGGCCCTGCACG
CGCGGGAGGTGCTGTGGATTCTACCAGCTTCGATGCTGAACGCCACGAGT
GATTCTCTGCAACTGTCGAATCTGCAGCTCCTCAGCTTCGTTGGTGCCAA
CTTCAACGATAGCTTGAGCGATGTGGCACTGCCGCGTGGCCTAAAGGGGA
TCATCATCGGTGGAAGGTTTAACCGCTCTGTGGAGAACGTGGCGTGGCCT
TCATCGCTCCTCCAGCTGACCTTTGGCTATGAGTTCAACCAGCCAATTGA
CAACGTCACTTGGCCAAAGTCTCTGATGCAGTTGACCTTCGGCAACAGGT
TTAACCGACCGCTTTTTTCGGTAAATTGGCCGGCATCTCTGCAGCAGGTG
GCACTCGGCGACCACTTCGACCAACCGCTCCATGGCGTTTCGTGGCCGCC
AGATCTGCGCGTCTTGAGCTTCGGCCTCCTGTTTAACCAGAGAGTCGACG
CTGTGGCGTGGCCGACCTCTCTCCAGGAATTAGCCTTCGGGTGGTCATTC
GATCATTCGGTTGACGAGGCAAAGTGGCCAGCTTCATTGAAGAAACTCTC
CTTCGGCGGTGGTTTCAACAAGGGGCTTGACAGAATGGTATGGCCGGCTT
CGCTCCAGCAGCTCGTCACCGGCAGCAGCTTCGACCAGCAAATCGATCAA
ATTACGTGGCCGCTATCGGTGAAAGTGATTGTACTCGGGTCCAAATTCAA
CAAGTGCATCGACCGCGTTAGCTTCCCAACATTCTTGGAGGAACTAACAT
TTGGCCAACACTTCGACGAGGCACTCGACAGGGTAAAATGGCCGTCATCG
CTACAGCAACTCACCCTAGGGTGGAACTTCAACCAAGGTCTCCTCGCGGT
GGTATGGCCCGTGGCCCTGAAGAAGTTGGTTCTAGGCGGTCGCTTCAACC
AACCCATCGCTGGCGTTCGGTGGCCCCCTTCTCTCCAGGAGCTGGTTTTC
AGCCACATGTTCAACCAACCCGTCGACGTCTGTGCAGCTTGGCCTGCATC
GTTGCGCAAGCTGACGTTTGGCCAAGACTTCAGAAAATCCATCCACGGCG
TAGCCTGGCCCAAGTCACTGCAGTATCTGAGGTTCGGCCAAGCTTTCCCG
ATTCCAGCGGGCGACTTTTCGTGGCCTGCCTCTCTACGACAGCTGACGTT
TGTTTGCTACTCTGACGATGTGCTGCCGGCAGTGCCGGGCGTGGAGGTGT
GCAGGGTGCAGCCTCGTGTTGGCCGTTGGCCTCTCCACGGCGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:976459..977955-

>mRNA_Ecto-sp6_S_contig10.514.1 ID=mRNA_Ecto-sp6_S_contig10.514.1|Name=mRNA_Ecto-sp6_S_contig10.514.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1497bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:976459..977955- (Ectocarpus species6 EcLAC_371)
GGCTCTAGCAGGTGCTTGGACGCTTTCGTTGTCGCCCTCAACGAAACCTG
CCACGAGGGAAAATGCATCATGTCGACCACGGCGCTCCAGCTCGCGTCGC
TGCAGTTCTGCGTGGCTTGCCGAAGTGCATCGACCGTTCGCCTAAGGATC
GACACGGATACACCTAGACACTTGTGGACCAAGGATTCTGGACCTCAGGC
TCGACGCCGCGCGAGGGTTTGCCGTGCGTCTCGCGTGCCGGCCCTGCACG
CGCGGGAGGTGCTGTGGATTCTACCAGCTTCGATGCTGAACGCCACGAGT
GATTCTCTGCAACTGTCGAATCTGCAGCTCCTCAGCTTCGTTGGTGCCAA
CTTCAACGATAGCTTGAGCGATGTGGCACTGCCGCGTGGCCTAAAGGGGA
TCATCATCGGTGGAAGGTTTAACCGCTCTGTGGAGAACGTGGCGTGGCCT
TCATCGCTCCTCCAGCTGACCTTTGGCTATGAGTTCAACCAGCCAATTGA
CAACGTCACTTGGCCAAAGTCTCTGATGCAGTTGACCTTCGGCAACAGGT
TTAACCGACCGCTTTTTTCGGTAAATTGGCCGGCATCTCTGCAGCAGGTG
GCACTCGGCGACCACTTCGACCAACCGCTCCATGGCGTTTCGTGGCCGCC
AGATCTGCGCGTCTTGAGCTTCGGCCTCCTGTTTAACCAGAGAGTCGACG
CTGTGGCGTGGCCGACCTCTCTCCAGGAATTAGCCTTCGGGTGGTCATTC
GATCATTCGGTTGACGAGGCAAAGTGGCCAGCTTCATTGAAGAAACTCTC
CTTCGGCGGTGGTTTCAACAAGGGGCTTGACAGAATGGTATGGCCGGCTT
CGCTCCAGCAGCTCGTCACCGGCAGCAGCTTCGACCAGCAAATCGATCAA
ATTACGTGGCCGCTATCGGTGAAAGTGATTGTACTCGGGTCCAAATTCAA
CAAGTGCATCGACCGCGTTAGCTTCCCAACATTCTTGGAGGAACTAACAT
TTGGCCAACACTTCGACGAGGCACTCGACAGGGTAAAATGGCCGTCATCG
CTACAGCAACTCACCCTAGGGTGGAACTTCAACCAAGGTCTCCTCGCGGT
GGTATGGCCCGTGGCCCTGAAGAAGTTGGTTCTAGGCGGTCGCTTCAACC
AACCCATCGCTGGCGTTCGGTGGCCCCCTTCTCTCCAGGAGCTGGTTTTC
AGCCACATGTTCAACCAACCCGTCGACGTCTGTGCAGCTTGGCCTGCATC
GTTGCGCAAGCTGACGTTTGGCCAAGACTTCAGAAAATCCATCCACGGCG
TAGCCTGGCCCAAGTCACTGCAGTATCTGAGGTTCGGCCAAGCTTTCCCG
ATTCCAGCGGGCGACTTTTCGTGGCCTGCCTCTCTACGACAGCTGACGTT
TGTTTGCTACTCTGACGATGTGCTGCCGGCAGTGCCGGGCGTGGAGGTGT
GCAGGGTGCAGCCTCGTGTTGGCCGTTGGCCTCTCCACGGCGGCTGA
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