mRNA_Ecto-sp6_S_contig10.489.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.489.1
Unique NamemRNA_Ecto-sp6_S_contig10.489.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.489.1 vs. uniprot
Match: A0A6H5L128_9PHAE (COX assembly mitochondrial protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L128_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.430e-36
Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:  319 QEVKVLMACHEENPYGKFFGACNDLKLALDSCFVQEKEEKRRKNMAKARSFDAGFQKELELRRKELDEEQQQAGR 543
            +EVK+LMACHEENPYGKFFGACNDLKLALDSCFV EKEEKRRKN+AKAR FDAGFQKELELRRKEL++EQQQAGR
Sbjct:   14 EEVKMLMACHEENPYGKFFGACNDLKLALDSCFVLEKEEKRRKNLAKARRFDAGFQKELELRRKELEQEQQQAGR 88
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BLAST of mRNA_Ecto-sp6_S_contig10.489.1 vs. uniprot
Match: F0Y773_AURAN (COX assembly mitochondrial protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y773_AURAN)

HSP 1 Score: 77.4 bits (189), Expect = 4.630e-14
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:  325 VKVLMACHEENPYGKFFGACNDLKLALDSCFVQEKEEKRRKNMAKARSFDAGFQKELELR 504
            V +L+ CH+ENPYGKF+GACND K A+D CF +EKEEKRR N  K RSF+  ++K+ + R
Sbjct:   16 VDLLVKCHDENPYGKFWGACNDEKAAMDWCFKEEKEEKRRANFEKTRSFNEEWRKKQDAR 75
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BLAST of mRNA_Ecto-sp6_S_contig10.489.1 vs. uniprot
Match: A0A8J2WQW2_9STRA (COX assembly mitochondrial protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WQW2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.150e-12
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:  325 VKVLMACHEENPYGKFFGACNDLKLALDSCFVQEKEEKRRKNMAKARSFDA 477
            V  L+ CH+ N YGKF+GACND K A+D+CF  EK+EKRR+N+ KAR+FDA
Sbjct:   16 VDALVECHDANVYGKFWGACNDQKAAMDACFKAEKDEKRRENLRKARAFDA 66
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BLAST of mRNA_Ecto-sp6_S_contig10.489.1 vs. uniprot
Match: A0A6A3SY18_9STRA (COX assembly mitochondrial protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SY18_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.170e-12
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:  322 EVKVLMACHEENPYGKFFGACNDLKLALDSCFVQEKEEKRRKNMAKARSFDAGFQKELELRRKELDEEQ 528
            E+K L+ CH+ENPY KFFGAC ++K ALD CF QEK   R +N   A++ DA  +++++ RR  + EEQ
Sbjct:   15 EIKALLECHDENPYAKFFGACGEVKTALDWCFRQEKTRIRSENFKHAKASDAFVRQKMQERRDRMAEEQ 83
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BLAST of mRNA_Ecto-sp6_S_contig10.489.1 vs. uniprot
Match: G4ZUD5_PHYSP (COX assembly mitochondrial protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZUD5_PHYSP)

HSP 1 Score: 72.0 bits (175), Expect = 6.180e-12
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:  322 EVKVLMACHEENPYGKFFGACNDLKLALDSCFVQEKEEKRRKNMAKARSFDAGFQKELELRRKELDEEQ 528
            E+K L+ CHEENPY KFFGAC D+K ALD CF +EK   R +N  +A++ DA  +++++ RR  +  EQ
Sbjct:   15 EIKALLECHEENPYAKFFGACGDVKTALDWCFREEKVRIRSENFQRAKASDAYVRQKMQERRDRVAAEQ 83
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BLAST of mRNA_Ecto-sp6_S_contig10.489.1 vs. uniprot
Match: A0A3M6VJT8_9STRA (COX assembly mitochondrial protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJT8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.140e-12
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:  322 EVKVLMACHEENPYGKFFGACNDLKLALDSCFVQEKEEKRRKNMAKARSFDAGFQKELELRR 507
            E+K L+ CH+ NPY KFFGAC+D+K ALD CF  EKE  R +N+ +A++ DA  +++++ RR
Sbjct:   15 EIKALLQCHDNNPYAKFFGACSDVKTALDWCFKHEKERIRAENLKRAKASDAFVKQKMQERR 76
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BLAST of mRNA_Ecto-sp6_S_contig10.489.1 vs. uniprot
Match: A0A0P1AB85_PLAHL (COX assembly mitochondrial protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB85_PLAHL)

HSP 1 Score: 70.1 bits (170), Expect = 2.130e-11
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:  322 EVKVLMACHEENPYGKFFGACNDLKLALDSCFVQEKEEKRRKNMAKARSFDAGFQKELELRR 507
            E+K L+ CH +NPY KFFGACND+K ALD CF +EK   R +N+  A++ DA  +++++ RR
Sbjct:   15 EIKALLDCHNDNPYAKFFGACNDVKSALDQCFKKEKIRIRSENLRHAKASDAYVRRKMQERR 76
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BLAST of mRNA_Ecto-sp6_S_contig10.489.1 vs. uniprot
Match: A0A225VCF9_9STRA (COX assembly mitochondrial protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VCF9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.080e-11
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:  322 EVKVLMACHEENPYGKFFGACNDLKLALDSCFVQEKEEKRRKNMAKARSFDAGFQKELELRRKELDEEQQQA 537
            E+K L+ CH+ENPY KFFGAC ++K ALD CF +EK   R +N   A++ DA  +++++ RR  +  E+ +A
Sbjct:   15 EIKALLECHDENPYAKFFGACGEIKTALDICFREEKNRIRSENFKHAKASDAYVKQKMQERRDRVANEKAKA 86
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BLAST of mRNA_Ecto-sp6_S_contig10.489.1 vs. uniprot
Match: K3WST6_GLOUD (COX assembly mitochondrial protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WST6_GLOUD)

HSP 1 Score: 69.3 bits (168), Expect = 4.090e-11
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:  325 VKVLMACHEENPYGKFFGACNDLKLALDSCFVQEKEEKRRKNMAKARSFDAGFQKELELRR 507
            +  L  CHEENP  KFFGACN+ K+ALD CF +EKE KR +N+ +AR+ DA  +++++ RR
Sbjct:   16 IMALNLCHEENPRMKFFGACNEAKVALDKCFKKEKERKRDENLRRARASDAYVRQKMKERR 76
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BLAST of mRNA_Ecto-sp6_S_contig10.489.1 vs. uniprot
Match: A0A2P4XXV8_9STRA (COX assembly mitochondrial protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XXV8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.740e-11
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  322 EVKVLMACHEENPYGKFFGACNDLKLALDSCFVQEKEEKRRKNMAKARSFDAGFQKELELRR 507
            E+K L+ CHE NPY KFFGAC D+K ALD CF +EK   R +N   A++ DA  +++++ RR
Sbjct:   15 EIKALLECHESNPYAKFFGACGDVKTALDICFREEKNRIRSENFKHAKASDAYVKQKMQERR 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5L128_9PHAE1.430e-3690.67COX assembly mitochondrial protein n=1 Tax=Ectocar... [more]
F0Y773_AURAN4.630e-1458.33COX assembly mitochondrial protein n=1 Tax=Aureoco... [more]
A0A8J2WQW2_9STRA1.150e-1262.75COX assembly mitochondrial protein n=1 Tax=Pelagom... [more]
A0A6A3SY18_9STRA4.170e-1249.28COX assembly mitochondrial protein n=2 Tax=Phytoph... [more]
G4ZUD5_PHYSP6.180e-1249.28COX assembly mitochondrial protein n=1 Tax=Phytoph... [more]
A0A3M6VJT8_9STRA8.140e-1250.00COX assembly mitochondrial protein n=1 Tax=Peronos... [more]
A0A0P1AB85_PLAHL2.130e-1150.00COX assembly mitochondrial protein n=1 Tax=Plasmop... [more]
A0A225VCF9_9STRA3.080e-1144.44COX assembly mitochondrial protein n=1 Tax=Phytoph... [more]
K3WST6_GLOUD4.090e-1152.46COX assembly mitochondrial protein n=1 Tax=Globisp... [more]
A0A2P4XXV8_9STRA6.740e-1150.00COX assembly mitochondrial protein n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:722313..724537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score72.0
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog36331.EPrPI00000014749
Model size1439
KEGG koko:K18172
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.CNPV141 HAL3-like domain protein (ISS). Source PGD
EggNOG OGs1MI5Q@121069,2CZWX@1,2SBZE@2759
Ec32 ortholog descriptionCytochrome c oxidase biogenesis protein Cmc1-like
Ec32 orthologEc-15_002730.1
Cds size282
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348702.353711-UTR-Ecto-sp6_S_contig10:722312..7231521682348702.353711-UTR-Ecto-sp6_S_contig10:722312..723152Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 722313..723152 -
1682348702.3681867-UTR-Ecto-sp6_S_contig10:723168..7232211682348702.3681867-UTR-Ecto-sp6_S_contig10:723168..723221Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 723169..723221 -
1682348702.3981094-UTR-Ecto-sp6_S_contig10:724273..7245371682348702.3981094-UTR-Ecto-sp6_S_contig10:724273..724537Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 724274..724537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348702.3768952-CDS-Ecto-sp6_S_contig10:723221..7233471682348702.3768952-CDS-Ecto-sp6_S_contig10:723221..723347Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 723222..723347 -
1682348702.3901315-CDS-Ecto-sp6_S_contig10:724117..7242731682348702.3901315-CDS-Ecto-sp6_S_contig10:724117..724273Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 724118..724273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.489.1prot_Ecto-sp6_S_contig10.489.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 723222..724273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.489.1

>prot_Ecto-sp6_S_contig10.489.1 ID=prot_Ecto-sp6_S_contig10.489.1|Name=mRNA_Ecto-sp6_S_contig10.489.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=94bp
MYLLTAWFPRCPANAGMTQEVKVLMACHEENPYGKFFGACNDLKLALDSC
FVQEKEEKRRKNMAKARSFDAGFQKELELRRKELDEEQQQAGR*
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mRNA from alignment at Ecto-sp6_S_contig10:722313..724537-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.489.1 ID=mRNA_Ecto-sp6_S_contig10.489.1|Name=mRNA_Ecto-sp6_S_contig10.489.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2225bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:722313..724537- (Ectocarpus species6 EcLAC_371)
AATCCTCCCCCCGTCCCATCGTCACAAACACACGTGTCGACGTGTTTGCG
CTGCAGCGTAGGATAACGACGATGCAACGATGAGGAAAACTTCCACGTTC
ACAGAGCAGCAAGAATAAGGGGTACATTGGCAGCTCTGGGCGAAGAAAGG
CCGGCGGTGCTCGCGCCCTCCCCTTTTCCCTCGTCGTCGGGCGCTGACTC
AAAGAGCAACGATTTGTTTACGATTTGTTTGCCTACGCCCCTTCTTCCCT
CTCGTACCCCGACGATGTACTTGCTCACGGCATGGTTCCCTCGGTGCCCT
GCAAATGCCGGCATGACCCAGGAGGTGAAGGTGCTGATGGCGTGCCACGA
GGAAAACCCATACGGAAAATTCTTCGGGGCGTGCAACGACCTCAAGCTCG
CGCTCGATTCGTGCTTTGTGGTGAGCAGCAACAGTTGTAGATAGTCGGAG
ATGATCGAAAAAATGGAGAAAACAGCACTCACCCACACACTCGCGCGCAA
GTTTTTCGAGGGCCCCCGGGGACCTGGAAATTTGACGCTGTTTGTCCCAG
GACGACATATTGATGGTCTCCTTCGTTTGTCGGCCGGGTGGCGACGTCGG
TGCCATGCAGAGAAGCACACACGCACGCAAAGCTTGTTCGCGTTTGTCCT
GCTATGTAAACGGACCATGTTTTGTCATTGGTGAGCTGTTTAGCGCGCTC
GGTACCATTAACAGAAACCCACACACAGACGCACATGCATATGCATATGC
ATGCAAGAGCACATGCGCATGGCCTTGCGAAGTATTTTTCTGTTTCAGCT
GTACTGACGCCTGTTCATTGGTGTTCATCGGTTGTTCATTGGTCAACCGG
TTAGCGCGGTCGATGATAACAAAATAAACACACCCACAAGTCCATGCTTC
GTCCACAAAGCTACCCCCTGCCCCCCCCCGTGCCTTCTACCCATCCGGCC
CCTTCTCTCTGTCCTTCGTGCCGCACATGCAGATCGCACGTGTTTCAGAA
CCTCAAGCGTGCTGTATGGAAAAGGTTTTTGTATCCGGAATGTACCGTAT
CCGGTGTAGGTCAACGCCGGTTTTTTTTTAGTTTCCAGTCGTTGGCTTTC
CCTACAAGGATTAATTCCTCTTTTGTGTTCAAGCATTGGGGCCATCATCC
CCTCTCCGCCTCTACACATGTTTCGTTTCCATGCACGCAGCAAGAAAAAG
AGGAGAAGCGTCGGAAGAACATGGCCAAGGCCCGAAGTTTCGACGCTGGC
TTTCAGAAGGAGCTCGAACTCAGGCGAAAGGAGCTGGATGAGGAACAACA
GCAGGCGGGACGGTAGCGGCGGTGGTTGTGGTGTTGGCAGCAGCAGCAGC
AGTAGTGGCAGCAACAGCAGCAGGAGGAGGAGGAGGAGGAGGGAAGGAGG
AGGAGGAGGACGAAGGAGCTGCATAAATGAGGAACAGCCGCAGGAGGGAC
GGTAGCAGCAGCAGCAGCAACAGCAACATCGTGTTTCGACGTGATCCCTG
CCAAGGCTCTAGAATGAGGCCCAACAACCTGTCAACCTCGGTCGCCGTTT
GCATCCTACGGATGACGCCAGCACATGACGACCTACTAATGTTTTCCCGG
GGCTCGCGTTTCTTTTTTGGGAAACAACATGGACTATGTAGATTTGGTGC
GGGACGGGGTTCAGTTTCTTGTGCTCGAAGAAATTATCGCCTCAAGAAGT
TGAAAAGGGGGGACTTCGGGGACGGTGCAGTGAGCTGTGTAGGCTCAAGC
GCTCTCGTTTGTCAACTAGAAGCTGATCGTTGAGGCTGTGATCCCCCACC
CTCCACGACCCCGGACGTGAGGATAGCAACACGAAGAAAAAGTTTTTTTC
TCTCGGCCTTCGTCGAGCATTGTTTAAGTCGGGGCAGAGTAAATCTAGCC
TAGGGTTCGGCGGCATACGTACGCCGCGAGGCATGGAACAATCGTTGTTC
TTCCGCTGTTGCTGACGGCAGTGGGCGATTACGTCGCTTCCGCTGTGCTT
CTCTGAGTCCAATTCACGTGTTCCGCGGTGGCAACGGATAGCACGTTGAC
GCAAGTTCGTCGGATCCGAAATATTTGTAAAAGGGTGCGGTAACCACACA
ACCAGCTGTTGATGACGCGGTGACCTTTTCCTTTGTTCTTGGTTGCCCTG
CAGATTGAGCATGAACGACCTTCCACCCATCAGTTCACAACTCATCCCCA
GCAGCATTGCCGTCGGTAAGGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:722313..724537-

>mRNA_Ecto-sp6_S_contig10.489.1 ID=mRNA_Ecto-sp6_S_contig10.489.1|Name=mRNA_Ecto-sp6_S_contig10.489.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:722313..724537- (Ectocarpus species6 EcLAC_371)
ATGTACTTGCTCACGGCATGGTTCCCTCGGTGCCCTGCAAATGCCGGCAT
GACCCAGGAGGTGAAGGTGCTGATGGCGTGCCACGAGGAAAACCCATACG
GAAAATTCTTCGGGGCGTGCAACGACCTCAAGCTCGCGCTCGATTCGTGC
TTTGTGCAAGAAAAAGAGGAGAAGCGTCGGAAGAACATGGCCAAGGCCCG
AAGTTTCGACGCTGGCTTTCAGAAGGAGCTCGAACTCAGGCGAAAGGAGC
TGGATGAGGAACAACAGCAGGCGGGACGGTAG
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