prot_Ecto-sp6_S_contig99.18843.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig99.18843.1
Unique Nameprot_Ecto-sp6_S_contig99.18843.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length220
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18843.1 vs. uniprot
Match: D8LSZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ0_ECTSI)

HSP 1 Score: 405 bits (1040), Expect = 2.810e-142
Identity = 215/219 (98.17%), Postives = 217/219 (99.09%), Query Frame = 0 
Query:    1 MAATATRTLEEMRDIVNNDMPQIYDRTAGVDDVREVLELEAAMEMECERREMGARAMIRDTIDLLEQRHRAIVEPSEQAFVARVREVEHERAQAASHIQEQAEEAAARERDIERMQGEVEDTQTEIENTVDAHTMEMPRVQNAIGLYTNITRIKWNYETEGEIMAGWLVPPEAGVGMKGANGTAVVEGFQFDAAGKDDFEVANKLWDVIDGKARAMVEA 219
            MAATATRTLEEMRDIVNNDMPQIYDRTAGVDDVREVLELEAAMEMECERREM ARAMIRDTID+LEQRHRAIVEPSEQAFVAR+R VEHERAQAASHIQEQAEEAAARERDIERMQGEVEDTQTEIENTVDAHTMEMPRVQNAIGLYTNITRIKWNYETEGEIMAGWLVPPEAGVGMKGANGTAVVEGFQFDAAGKDDFEVANKLWDVIDGKARAMVEA
Sbjct:    1 MAATATRTLEEMRDIVNNDMPQIYDRTAGVDDVREVLELEAAMEMECERREMDARAMIRDTIDVLEQRHRAIVEPSEQAFVARIRVVEHERAQAASHIQEQAEEAAARERDIERMQGEVEDTQTEIENTVDAHTMEMPRVQNAIGLYTNITRIKWNYETEGEIMAGWLVPPEAGVGMKGANGTAVVEGFQFDAAGKDDFEVANKLWDVIDGKARAMVEA 219
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18843.1 vs. uniprot
Match: C1N8R2_MICPC (Kinetochore protein Spc24 n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N8R2_MICPC)

HSP 1 Score: 54.7 bits (130), Expect = 1.260e-5
Identity = 52/203 (25.62%), Postives = 90/203 (44.33%), Query Frame = 0 
Query:    9 LEEMRDIVNNDMPQIYDRTAGVDDVREVLELEAAMEMECERREMGARAMIRDTIDLLEQRHRAIVEP-SEQAFVARVREVEHERAQAASHIQEQAEEAAARERDIERMQGEVEDTQTEIENTVDAHTMEMPRVQNAIGLYTNITRIKWNYETEGEIMAGWLVPPEAGVGMKGANGTAVVEGFQFDAAGKDDFEVANKLWDVID 210
            +EEMR I   D   +  R    +   EV EL       CERRE+  + +I++ +  +++  +A     SE+    R+ + E E+  A  ++     EA A E     ++ E    + + +   D     +PR+++ + LY +I++I W Y+    I                 NG   V+ F F      +FE+ NK+WD+ID
Sbjct:   21 IEEMRRIYATDEDTMKARQLN-EQFAEVREL-------CERREVHMQDVIKEMVQKVKEAEKAATPTESEEEHKKRLAQAESEKRAAEEYLTHMEHEAMALENSQAELKAEAAKLKMKKQELTDMEDEGVPRLKHELSLYAHISKISWAYDRPDRIKGR-------------VNGAGEVKPFDFAPDEMTEFELVNKMWDLID 202
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18843.1 vs. uniprot
Match: A0A7S1YQV0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YQV0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.980e-5
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0 
Query:  132 AHTMEMPRVQNAIGLYTNITRIKWNYETEGEIMAGWLVPPEAGVGMKGANGTAVVEGFQFDAAGKDDFEVANKLWDVIDGKARAMV 217
            A   E+PR++  + LY  +T IKW+YE E  +MAG +     G+  +          F+ D     +F+VAN +W ++DGK+ A+V
Sbjct:  188 AKIKEVPRMKKQLSLYAAMTNIKWHYEKEN-VMAGEVAVLSQGICRR----------FEIDPMEHSEFDVANAVWSLMDGKSSAVV 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18843.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSZ0_ECTSI2.810e-14298.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
C1N8R2_MICPC1.260e-525.62Kinetochore protein Spc24 n=1 Tax=Micromonas pusil... [more]
A0A7S1YQV0_9STRA3.980e-533.72Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 212..219
NoneNo IPR availableCOILSCoilCoilcoord: 84..132
NoneNo IPR availableGENE3D3.30.160.570coord: 137..212
e-value: 1.8E-6
score: 29.6
IPR013252Kinetochore-Ndc80 subunit Spc24PANTHERPTHR22142UNCHARACTERIZEDcoord: 1..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:283609..286580 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18843.1mRNA_Ecto-sp6_S_contig99.18843.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig99 283609..287455 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig99.18843.1 ID=prot_Ecto-sp6_S_contig99.18843.1|Name=mRNA_Ecto-sp6_S_contig99.18843.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=220bp
MAATATRTLEEMRDIVNNDMPQIYDRTAGVDDVREVLELEAAMEMECERR
EMGARAMIRDTIDLLEQRHRAIVEPSEQAFVARVREVEHERAQAASHIQE
QAEEAAARERDIERMQGEVEDTQTEIENTVDAHTMEMPRVQNAIGLYTNI
TRIKWNYETEGEIMAGWLVPPEAGVGMKGANGTAVVEGFQFDAAGKDDFE
VANKLWDVIDGKARAMVEA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013252Ndc80_Spc24