prot_Ecto-sp6_S_contig98.18799.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig98.18799.1
Unique Nameprot_Ecto-sp6_S_contig98.18799.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length825
Homology
BLAST of mRNA_Ecto-sp6_S_contig98.18799.1 vs. uniprot
Match: D8LEM0_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM0_ECTSI)

HSP 1 Score: 1129 bits (2920), Expect = 0.000e+0
Identity = 703/826 (85.11%), Postives = 719/826 (87.05%), Query Frame = 0
Query:    1 MSSYDNRTGTASXXXXXXXXXXXXXXXXAPS--SDRVTLEIKGAKLNVAIQNALRRKRSHDRSPVQGPQDRADGGDRNGPACQYSNDDGKGSISKKEGPRSAGGTSVKEVALLKAAAENLRAGIREKEDAVTELERDKETLLEKASQLESTTQENFRLGQKVAELGRQIESLEAELAKAEAGRALTMSLVETLKSAQNDLRASHAQVSQRYAELENMLEDSAEAVRRGNVLLHSQQLKTDAQARQIKRQDEDLATLREERETQLAKADRNATELAQVLRRERAGQSSIADAQVEVGDLXXXXXXXXXXXXKHRGVVRKSQEVIDVHEKALKDARSKLLSLSLEADKQSSRHHQASAEAATETARATADKNAALRESRALRVEKEGLKDKLEEAGRKLDEFQAQQSDSAAAMEAVAARNSAAVQGGHNSNGPLEHTYPKPNSDSSSQVATRGRRQQDFENHAESIFGNGSANAPQVQIDNSPRQQQGRSSPPLSSDPTSLGITTQGDNTSSLRRSYRAAPTEEAAEGQKLSSTNGPSNSTVFVRQVEAGLPREGALKSTNGRTDNNHSLPSSSPLPAAGVGRRSSASPATXXXXXXXXXXXXXXXXRSGEGDAGRIGGTQIVHREVTTVSHSRGHSDVFDGAGRRGQRGGTDIVDGGRRGASGLRSRSKLRSPAGTDYLNDGSEAVRAGGGSVDGSDDAGSKRKRAKRGALGADXXXXXXXXXXXGGLMDSLSPPLLSGAATSSRLSHFDAGNNRPGEKAVQVQGKDGDSTPEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCRSNEG 824
            MSSYDNRTG AS XXXXXXXXXXXXXXX     SDRVTLEIKGAKLNVAIQNALRRKRSHDRSPVQG                                     TSVK+VALLKAAAENLRAGIREKED +TEL                                  IESLEAELAKAEAGRALTMSLVETLKSAQNDLRASHAQVSQRYAELENMLEDSAEAVRRGNVLLHSQQLKTDAQARQIKRQDEDLATLREERETQLAKADRNATELAQVLRRERAGQSSIADAQVEVGDL  XXXXXX    KHRGVVRKSQEVIDVHEKALKDARSKLLSLSLEADKQSSRHHQASAEAATETARATADKNAALRESRALR+EK+GLKDKLEEAGRKLDE QAQQSDSAAAMEAVAARNS AV GGHN+NGP +HTYPKPNSDSSSQVATRGRRQQDFENHAESIF NGSANAPQVQIDNSPRQ QGRSSPPL S PTSLG TTQGDNTSS++RSYRAAP EEAAEGQKLSSTN PS+STVFVRQ EAGLPREGALKSTNGRTDNNH++PSSSPLPAAGVGRRSSASPA XXXXXXXXXXXXXXXXRSGEGDAGRIGGTQIVHREVTTVSHSRG +DVFDGAGRRGQR GTD+VDGGRRGASGLR RS+LRSPAGTDY NDGSEAVRA GGSVDGSDDAGSKRKRAKRGAL ADXXXXXXXXXXXGGL DSL PPLLSGAATSSRLSHFD GN+RPGEK+VQVQGKDGDSTPEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCRSNEG
Sbjct:    1 MSSYDNRTGAASAXXXXXXXXXXXXXXXXXXXXSDRVTLEIKGAKLNVAIQNALRRKRSHDRSPVQG-------------------------------------TSVKDVALLKAAAENLRAGIREKEDVITEL----------------------------------IESLEAELAKAEAGRALTMSLVETLKSAQNDLRASHAQVSQRYAELENMLEDSAEAVRRGNVLLHSQQLKTDAQARQIKRQDEDLATLREERETQLAKADRNATELAQVLRRERAGQSSIADAQVEVGDLKAXXXXXXDAFAKHRGVVRKSQEVIDVHEKALKDARSKLLSLSLEADKQSSRHHQASAEAATETARATADKNAALRESRALRIEKDGLKDKLEEAGRKLDELQAQQSDSAAAMEAVAARNSVAVPGGHNNNGPQQHTYPKPNSDSSSQVATRGRRQQDFENHAESIFDNGSANAPQVQIDNSPRQHQGRSSPPLLSVPTSLGTTTQGDNTSSVQRSYRAAPAEEAAEGQKLSSTNRPSSSTVFVRQAEAGLPREGALKSTNGRTDNNHNIPSSSPLPAAGVGRRSSASPAXXXXXXXXXXXXXXXXXRSGEGDAGRIGGTQIVHREVTTVSHSRGPNDVFDGAGRRGQRDGTDVVDGGRRGASGLRFRSRLRSPAGTDYSNDGSEAVRAAGGSVDGSDDAGSKRKRAKRGALEADXXXXXXXXXXXGGLTDSLPPPLLSGAATSSRLSHFDNGNSRPGEKSVQVQGKDGDSTPEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCRSNEG 755          
BLAST of mRNA_Ecto-sp6_S_contig98.18799.1 vs. uniprot
Match: A0A6H5KZW7_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW7_9PHAE)

HSP 1 Score: 754 bits (1946), Expect = 1.810e-263
Identity = 468/616 (75.97%), Postives = 493/616 (80.03%), Query Frame = 0
Query:  208 RYAELENMLEDSAEAVRRGNVLLHSQQLKTDAQARQIKRQDEDLATLREERETQLAKADRNATELAQVLRRERAGQSSIADAQVEVGDLXXXXXXXXXXXXKHRGVVRKSQEVIDVHEKALKDARSKLLSLSLEADKQSSRHHQASAEAATETARATADKNAALRESRALRVEKEGLKDKLEEAGRKLDEFQAQQSDSAAAMEAVAARNSAAVQGGHNSNGPLEHTYPKPNSDSSSQVATRGRRQQDFENHAESIFGNGSANAPQVQIDNSPRQQQGRSSPPLSSDPTSLGITTQGDNTSSLRRSYRAAPTEEAAEGQKLSSTNGPSNSTVFVRQVEAGLPREGALKSTNGRTDNNHSLPSSSPLPAAGVGRRSSASPATXXXXXXXXXXXXXXXXRSGEGDAGRIGGTQIVHREVTTVSHSRGHSDVFDGAGRRGQRGGTDIVDGGRRGASGLRSRSKLRSPAGTDYLNDGSEAVRAGGGSVDGSDDAGSKRKRAKRGALGADXXXXXXXXXXXGGLMDSLSPPLLSGAATSSRLSHFDAGNNRPGEKAVQVQGKDGDSTPEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCRSNE 823
            RYAELENMLEDSAEA+RRGNVLLHSQQLKTDAQARQIKRQDEDLATLREERETQLAKADRNATELAQVLRRERAGQSSIADAQVEVGDL            K  GVVRKSQEVI+ HEKALK+ARS+LLSLSLEADKQSSRHHQASAEAATETARATADKNAALRESRALR+EKEGLKDKLEEAGR     QAQ+S+  AAMEAVAARNSAAVQGGH+++GP +HTYPKPNSDSSSQVATRGRRQQDFE H E  + NGS+NAPQVQIDN PRQQQGRSSPP  S  TSLG TTQG  +SSLRRSYR A  EEAAEGQKLSST+ PS+ +V  RQ E   PREGALKSTNGRTDNNHSLPSSSP PAAGVGR +SASPAT  XXXXXXXXXX    + GEGDAGRIGGTQ +  +VT VSH+RG ++V DGA                                            RA    VDGSDDAGSKRKRAK G L AD  XXXXXXXXXG L DSLSPPLLSGA TSSRLSHFDAGNNRPGE AVQVQGK GDST EGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKC  N+
Sbjct:   33 RYAELENMLEDSAEALRRGNVLLHSQQLKTDAQARQIKRQDEDLATLREERETQLAKADRNATELAQVLRRERAGQSSIADAQVEVGDLKAELAEMRDAFAK--GVVRKSQEVINAHEKALKNARSELLSLSLEADKQSSRHHQASAEAATETARATADKNAALRESRALRIEKEGLKDKLEEAGRXXXXLQAQRSELGAAMEAVAARNSAAVQGGHSNSGPQQHTYPKPNSDSSSQVATRGRRQQDFEKHPECTYDNGSSNAPQVQIDNFPRQQQGRSSPPSLSVHTSLGTTTQGGASSSLRRSYRVASAEEAAEGQKLSSTHRPSSKSVLSRQAEPESPREGALKSTNGRTDNNHSLPSSSPFPAAGVGRVASASPATSAXXXXXXXXXXTDRRKGGEGDAGRIGGTQNIDPDVTAVSHNRGPNNVLDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAARVDVDGSDDAGSKRKRAKTGPLEADAAXXXXXXXXXG-LTDSLSPPLLSGATTSSRLSHFDAGNNRPGE-AVQVQGKGGDSTLEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCSGND 644          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18799.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEM0_ECTSI0.000e+085.11PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZW7_9PHAE1.810e-26375.97PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 286..306
NoneNo IPR availableCOILSCoilCoilcoord: 367..401
NoneNo IPR availableCOILSCoilCoilcoord: 153..180
NoneNo IPR availableCOILSCoilCoilcoord: 314..341
NoneNo IPR availableCOILSCoilCoilcoord: 108..149
NoneNo IPR availableCOILSCoilCoilcoord: 202..222
NoneNo IPR availableCOILSCoilCoilcoord: 237..264
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 772..820
e-value: 5.6E-6
score: 35.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 736..823
e-value: 4.1E-7
score: 31.9
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 773..819
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 770..822
score: 8.707
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 764..820

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:551089..560434 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18799.1mRNA_Ecto-sp6_S_contig98.18799.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig98 551089..560434 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig98.18799.1 ID=prot_Ecto-sp6_S_contig98.18799.1|Name=mRNA_Ecto-sp6_S_contig98.18799.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=825bp
MSSYDNRTGTASASVTAETPTATAAAASAPSSDRVTLEIKGAKLNVAIQN
ALRRKRSHDRSPVQGPQDRADGGDRNGPACQYSNDDGKGSISKKEGPRSA
GGTSVKEVALLKAAAENLRAGIREKEDAVTELERDKETLLEKASQLESTT
QENFRLGQKVAELGRQIESLEAELAKAEAGRALTMSLVETLKSAQNDLRA
SHAQVSQRYAELENMLEDSAEAVRRGNVLLHSQQLKTDAQARQIKRQDED
LATLREERETQLAKADRNATELAQVLRRERAGQSSIADAQVEVGDLKAEL
AEMREAFAKHRGVVRKSQEVIDVHEKALKDARSKLLSLSLEADKQSSRHH
QASAEAATETARATADKNAALRESRALRVEKEGLKDKLEEAGRKLDEFQA
QQSDSAAAMEAVAARNSAAVQGGHNSNGPLEHTYPKPNSDSSSQVATRGR
RQQDFENHAESIFGNGSANAPQVQIDNSPRQQQGRSSPPLSSDPTSLGIT
TQGDNTSSLRRSYRAAPTEEAAEGQKLSSTNGPSNSTVFVRQVEAGLPRE
GALKSTNGRTDNNHSLPSSSPLPAAGVGRRSSASPATSAADAGGGGGGGS
GRRRSGEGDAGRIGGTQIVHREVTTVSHSRGHSDVFDGAGRRGQRGGTDI
VDGGRRGASGLRSRSKLRSPAGTDYLNDGSEAVRAGGGSVDGSDDAGSKR
KRAKRGALGADAAAAAGAAAGAGGLMDSLSPPLLSGAATSSRLSHFDAGN
NRPGEKAVQVQGKDGDSTPEGVCPSCGDTPYGLMINCSGCARQYHSSCVP
DGQKVGKGLGATVFLCSKCRSNEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD