prot_Ecto-sp6_S_contig98.18770.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig98.18770.1
Unique Nameprot_Ecto-sp6_S_contig98.18770.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length613
Homology
BLAST of mRNA_Ecto-sp6_S_contig98.18770.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 951 bits (2457), Expect = 0.000e+0
Identity = 560/607 (92.26%), Postives = 568/607 (93.57%), Query Frame = 0
Query:    1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPTGTISTAVAGAGTXXXXXXXREPADRDNEKLWRGEGAESSPTGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGLTATAGGAXXXXXXXXXXVVGGAADSRSGVDYFGAGPRGGGVGVLPPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALARDAEADPADSAEEQFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPSPKPAEE-DPIDRDAAPASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXXXXXLGKVXXXXXXXXAADDEKFVGVSPADGSEPRAATAWSVTGSGGFKGGRMRGGGAGDGGGRSERIDPRDRRMPVAAXXXXXXXXTEEACSDETREGGARTATRTRLLPQEWGVTPEREEKDPTRRTPDAEGQRPRPPLPPAGRQGGDVNRGEGRGGGATGEIPAAEAR 606
            MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRR+SPLSPTG +STA AGAG XXXXX  REP  RDNEKL RGEGA SSP GDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTG TATAGG XXXXXXXXXX    AADSRSGVDYFGAGPR GG GV+PPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALA DAEADPAD AEE+FNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPK PSPKPAEE DPIDRDAA ASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXXXXXLGKV  XXXXXXAADDEKFVG+SPADGSE RAATAWSVTG+GGFKGGR+RG  AGD GGRSERIDPRDRRMPVAA        TEEACSDETREGGARTATRT+LLPQEWGVTPEREEKDPTRRTPDAE QRPRPPLPPAGRQGGDVNRGEGRGGGATGEIPAAE R
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREPTARDNEKLGRGEGAGSSPKGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKQPSPKPAEEEDPIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXXXXXLGKVTGXXXXXXAADDEKFVGISPADGSEQRAATAWSVTGTGGFKGGRIRGEVAGDAGGRSERIDPRDRRMPVAAVAAASGAATEEACSDETREGGARTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGGDVNRGEGRGGGATGEIPAAEVR 607          
BLAST of mRNA_Ecto-sp6_S_contig98.18770.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 853 bits (2203), Expect = 9.560e-306
Identity = 504/606 (83.17%), Postives = 521/606 (85.97%), Query Frame = 0
Query:    1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPTGTISTAVAGAGTXXXXXXXREPADRDNEKLWRGEGAESSPTGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGLTATAGGAXXXXXXXXXXVVGGAADSRSGVDYFGAGPRGGGVGVLPPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALARDAEADPADSAEEQFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPSPKPAEEDPIDRDAAPASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXXXXXLGKVXXXXXXXXAADDEKFVGVSPADGSEPRAATAWSVTGSGGFKGGRMRGGGAGDGGGRSERIDPRDRRMPVAAXXXXXXXXTEEACSDETREGGARTATRTRLLPQEWGVTPEREEKDPTRRTPDAEGQRPRPPLPPAGRQGGDVNRGEGRGGGATGEIPAAEAR 606
            MGEPRTSLWSRLVVFYSVNKRDQLN KVMAEIVAKYGSKEKELSARLLKKY RPLP SVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSP GT+ST VAGAG+       RE A R+N++L RGEGA SSPTGDELNFRSKFFDPLQALLHKTLRPPFP+EPALDNLAKFYRMLPKP  STG  ATAG  XXXXXXXXXX     ADSRSGV YFG+G RGGG GV+PPP AAGSPRGSHQAR+TWP SGGGR R+  LVRSAADMERADKDMA RRRLAEGALA DAE DPADSA  +FNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLP PKPAEEDPIDRDAA ASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXX    LGKV     X  AADD+K VGVSPADGSEP  ATAW+VTG+GGFKGGR+ G   GDGGG SERI PRD RM VAA        TEEACSDETREGGARTATR +LLPQEWGV  EREE DPT RTPDAE +RPRPPL  AGR GGDVNRG G  GGATGEIPAAE R
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAARENKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAG-RFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPPPKPAEEDPIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXGPEGLGKVTAGAGXAGAADDDKSVGVSPADGSEPTGATAWTVTGTGGFKGGRISGEDGGDGGGSSERIYPRDPRMDVAAAAAASGAATEEACSDETREGGARTATRMKLLPQEWGVPREREENDPTGRTPDAEEKRPRPPLSTAGRHGGDVNRGGGGEGGATGEIPAAEVR 605          
BLAST of mRNA_Ecto-sp6_S_contig98.18770.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.250e-10
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 0
Query:  303 EQFNPVKRIVQEYAG---SGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYT 371
            +Q +P+  ++Q   G   +GP S L R+  ENRR  VMIR VNS+RG C GL++AFD+H N+++VDV E YT
Sbjct:  201 QQADPLALVMQVALGPQGTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERYT 272          
BLAST of mRNA_Ecto-sp6_S_contig98.18770.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.720e-9
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0
Query:  309 KRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENY 370
            +R+   Y   GP+++L R   E RR  V++RRVNSIRGTC G ++AFD+HMNL+L+DV E Y
Sbjct:  183 ERLADTYM-DGPFTVLRRCFLERRRVVVVVRRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY 243          
BLAST of mRNA_Ecto-sp6_S_contig98.18770.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.890e-9
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0
Query:  312 VQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFV 374
            +Q+    GP+ +L R   E  R  V++RRVNS+RGTCTG ++AFD+HMNL+L+DV + Y    
Sbjct:   77 IQKCRHLGPFMVLRRCFLERTRVLVVVRRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEYVPLT 139          
BLAST of mRNA_Ecto-sp6_S_contig98.18770.1 vs. uniprot
Match: A0A8K1FHD1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHD1_PYTOL)

HSP 1 Score: 67.8 bits (164), Expect = 1.360e-8
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0
Query:  319 GPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAF 373
            GP+++L R   E +R  V+IRRVNSIRGTC+G ++AFD+HMNL+L+DV E    F
Sbjct:  183 GPFTVLRRCFLERKRVQVVIRRVNSIRGTCSGFLKAFDKHMNLVLLDVTEVVIPF 237          
BLAST of mRNA_Ecto-sp6_S_contig98.18770.1 vs. uniprot
Match: A0A1V9YMI3_9STRA (Sm domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-8
Identity = 31/82 (37.80%), Postives = 47/82 (57.32%), Query Frame = 0
Query:  304 QFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKL 385
            Q  P+   + +    GP ++L  + +   +  V+IRRVNSIRGTCTG ++ FD+H N++L+DV E Y   V    P   P +
Sbjct:  152 QRPPLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTERYVPLVSGEQPADAPSI 233          
BLAST of mRNA_Ecto-sp6_S_contig98.18770.1 vs. uniprot
Match: W4FR27_9STRA (Sm domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR27_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.470e-8
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 0
Query:  307 PVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENY 370
            PV   + +   +GP SLL+R      R  V++RR++SIRGTCTG ++ FD+HMNL+L+DV + +
Sbjct:  156 PVLHAIADLHSTGPLSLLHRCLVAKARVVVVLRRISSIRGTCTGYLKGFDKHMNLVLMDVMDKF 219          
BLAST of mRNA_Ecto-sp6_S_contig98.18770.1 vs. uniprot
Match: A0A3F2RTL9_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTL9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.250e-8
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 0
Query:  319 GPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENY 370
            GP+ +L R   E  R  V++RRVNS+RGTC+G ++AFD+HMNL+L+DV + Y
Sbjct:  185 GPFRVLRRCFLERMRVLVVVRRVNSVRGTCSGFLKAFDKHMNLVLMDVSQEY 236          
BLAST of mRNA_Ecto-sp6_S_contig98.18770.1 vs. uniprot
Match: A0A2P4XRX7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRX7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.850e-8
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 0
Query:  319 GPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAF 373
            GP+ +L R   E  R  V++RRVNS+RGTC+G ++AFD+HMNL+L+DV  ++  F
Sbjct:  187 GPFRVLRRCFLERTRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTHDFIPF 241          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18770.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0V3_ECTSI0.000e+092.26Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
A0A6H5LBR8_9PHAE9.560e-30683.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CP56_9STRA1.250e-1050.00Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A5D6YBS7_9STRA3.720e-953.23Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A662WXN3_9STRA3.890e-947.62Sm domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A8K1FHD1_PYTOL1.360e-856.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YMI3_9STRA2.000e-837.80Sm domain-containing protein n=1 Tax=Achlya hypogy... [more]
W4FR27_9STRA4.470e-845.31Sm domain-containing protein n=2 Tax=Aphanomyces a... [more]
A0A3F2RTL9_9STRA5.250e-853.85Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A2P4XRX7_9STRA7.850e-850.91Sm domain-containing protein n=1 Tax=Phytophthora ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 297..398
e-value: 1.9E-11
score: 45.7
IPR039267U7 snRNA-associated Sm-like protein Lsm11PANTHERPTHR21415U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11coord: 129..191
coord: 273..372
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 319..372

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:303204..307421 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18770.1mRNA_Ecto-sp6_S_contig98.18770.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig98 303204..307421 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig98.18770.1 ID=prot_Ecto-sp6_S_contig98.18770.1|Name=mRNA_Ecto-sp6_S_contig98.18770.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=613bp
MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKK
YSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPTGTIS
TAVAGAGTAGTGVAGREPADRDNEKLWRGEGAESSPTGDELNFRSKFFDP
LQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGLTATAGGATATET
GTTAAVVGGAADSRSGVDYFGAGPRGGGVGVLPPPNAAGSPRGSHQARET
WPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALARDAEADPADS
AEEQFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTG
LIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPSPKPAEEDPIDRDA
APASKVTGFEGLGGGGSGDGGYAGAGGVAGSRDARGPEGLGKVTGGAGGA
GAADDEKFVGVSPADGSEPRAATAWSVTGSGGFKGGRMRGGGAGDGGGRS
ERIDPRDRRMPVAAAAAASGAATEEACSDETREGGARTATRTRLLPQEWG
VTPEREEKDPTRRTPDAEGQRPRPPLPPAGRQGGDVNRGEGRGGGATGEI
PAAEARAHPTYA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039267Lsm11
IPR010920LSM_dom_sf