prot_Ecto-sp6_S_contig98.18754.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig98.18754.1
Unique Name	prot_Ecto-sp6_S_contig98.18754.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	144

Homology

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BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot
Match: D7G0W6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W6_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 2.280e-77
Identity = 123/132 (93.18%), Postives = 123/132 (93.18%), Query Frame = 0

Query:   12 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQARRFALFFLPAKMAKRMDQQAKKKELEELRAKLKVAREEDAAGDTPASK 143
            MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQ         PAKMAKRMDQQAKKKELEELRAKLKVAREEDAAGDTPASK
Sbjct:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQ---------PAKMAKRMDQQAKKKELEELRAKLKVAREEDAAGDTPASK 123

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BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot
Match: A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK)

HSP 1 Score: 178 bits (452), Expect = 2.130e-55
Identity = 92/134 (68.66%), Postives = 110/134 (82.09%), Query Frame = 0

Query:    1 MDGQRDKDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQARRFALFFLPAKMAKRMDQQAKKKELEELRAKLKVAREED 134
            MD Q+++ R   RLPPEVNR +YVRNLPFKI+A+EMYDIFGKYGAIRQIR+GD+ DT+GTAFVVY+DIYDAK AVDHLSGFNVCGRYLIVLYYQ         P +MAK+MDQ+ +++ELEEL+AK    R+ D
Sbjct:    1 MDPQQNR-RANARLPPEVNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQ---------PTRMAKKMDQERERRELEELKAKYLAERQND 124

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BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot
Match: A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA)

HSP 1 Score: 175 bits (443), Expect = 5.000e-54
Identity = 90/124 (72.58%), Postives = 102/124 (82.26%), Query Frame = 0

Query:    9 RRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQARRFALFFLPAKMAKRMDQQAKKKELEELRAKLKVARE 132
            RR  RLPPEVNR +YVRNLPFKI+ADEMYDIFGKYGAIRQIRLGD+ DTRGTAFVVY+DIYDAKAAVDHLSGFNVCGRYLIVLYYQ+          K  KR+D+  K++E+EE++AK  V  E
Sbjct:    7 RRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQS---------TKALKRVDEMKKRREIEEIKAKFGVGGE 121

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BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot
Match: A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA)

HSP 1 Score: 175 bits (443), Expect = 5.330e-54
Identity = 88/121 (72.73%), Postives = 102/121 (84.30%), Query Frame = 0

Query:   13 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQARRFALFFLPAKMAKRMDQQAKKKELEELRAKLKVAREE 133
            RLPPEVNR +Y+RNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYLIVLYYQA         A+M KR+D   K++ELEEL+AK  V+ EE
Sbjct:   12 RLPPEVNRVLYIRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQA---------ARMEKRIDNDKKRRELEELKAKFNVSGEE 123

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BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot
Match: A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA)

HSP 1 Score: 174 bits (442), Expect = 7.810e-54
Identity = 89/123 (72.36%), Postives = 101/123 (82.11%), Query Frame = 0

Query:   13 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQARRFALFFLPAKMAKRMDQQAKKKELEELRAKLKVAREEDA 135
            RLPPEVNR +YVRNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+VLYYQA R         M KRMD   K+KELEEL+ K  V+ +E A
Sbjct:   14 RLPPEVNRVLYVRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASR---------MQKRMDNDKKRKELEELKQKYNVSADEVA 127

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BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot
Match: A0A7S2S8J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J7_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.370e-52
Identity = 88/132 (66.67%), Postives = 103/132 (78.03%), Query Frame = 0

Query:    1 MDGQRDKDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQARRFALFFLPAKMAKRMDQQAKKKELEELRAKLKVARE 132
            MD      R   RLPPEVNR VYVRNLPFKISA+E+YDIFGKYGA+RQ+RLGD+ DTRGTAFVVY+DIYDAK AVDHL+GFNVCGRYL+VLYYQA         +KM +R+D Q K++ELEEL+ K  +  E
Sbjct:    4 MDSGAGSRRGNARLPPEVNRVVYVRNLPFKISAEEIYDIFGKYGALRQVRLGDKPDTRGTAFVVYEDIYDAKNAVDHLNGFNVCGRYLVVLYYQA---------SKMQERIDNQRKRQELEELKKKYNIQTE 126

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BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot
Match: R1DMS8_EMIHU (RRM domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DMS8_EMIHU)

HSP 1 Score: 170 bits (431), Expect = 3.930e-52
Identity = 86/118 (72.88%), Postives = 99/118 (83.90%), Query Frame = 0

Query:   12 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQARRFALFFLPAKMAKRMDQQAKKKELEELRAKLKV 129
            MRLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+  DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+VLYYQ           KM KR+D + ++KEL E+RAKL +
Sbjct:   10 MRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQ---------TKMQKRLDTEREQKELAEMRAKLGI 118

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BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot
Match: A0A067D1A1_SAPPC (Pre-mRNA branch site p14-like protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D1A1_SAPPC)

HSP 1 Score: 169 bits (429), Expect = 5.960e-52
Identity = 87/117 (74.36%), Postives = 98/117 (83.76%), Query Frame = 0

Query:   13 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQARRFALFFLPAKMAKRMDQQAKKKELEELRAKLKV 129
            RLPPEVNR +YVRNLPFKIS+DEMYDIFGKYGAIRQIRLG   DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+VLYYQA R         ++K+MD QAK++EL EL+A+  V
Sbjct:   14 RLPPEVNRVLYVRNLPFKISSDEMYDIFGKYGAIRQIRLGVNADTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQANR---------VSKKMDVQAKQQELAELKARYGV 121

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BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot
Match: A0A0M0JX52_9EUKA (Pre-mRNA branch site p14-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX52_9EUKA)

HSP 1 Score: 168 bits (425), Expect = 3.120e-51
Identity = 85/123 (69.11%), Postives = 100/123 (81.30%), Query Frame = 0

Query:    7 KDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQARRFALFFLPAKMAKRMDQQAKKKELEELRAKLKV 129
            + R+ +RLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+  DTRGTAFVVY+DI+DAK AVDHLSGFNVCGRYL+VLYYQ           KM KR D + + KEL E+RAKL +
Sbjct:    4 RQRQQLRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNAADTRGTAFVVYEDIFDAKTAVDHLSGFNVCGRYLVVLYYQQ---------TKMQKRQDTEREMKELAEMRAKLGI 117

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BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot
Match: A0A7S3SDL9_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SDL9_9SPIT)

HSP 1 Score: 167 bits (424), Expect = 4.560e-51
Identity = 84/121 (69.42%), Postives = 99/121 (81.82%), Query Frame = 0

Query:    7 KDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQARRFALFFLPAKMAKRMDQQAKKKELEELRAKL 127
            + R  +RLPPEVNRA+YVRNLPFKISA+EMYDIFGK+GA+RQ+RLG   DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+VLYYQ           KM KR+D + +++EL E+RAKL
Sbjct:   11 RQRATLRLPPEVNRALYVRNLPFKISAEEMYDIFGKFGALRQVRLGSAPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQ---------TKMQKRLDTEREQRELAEMRAKL 122

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig98.18754.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G0W6_ECTSI	2.280e-77	93.18	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6S9GFW4_HETAK	2.130e-55	68.66	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A835YN30_9STRA	5.000e-54	72.58	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S2C985_9STRA	5.330e-54	72.73	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S2DAY0_9STRA	7.810e-54	72.36	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2S8J7_9STRA	1.370e-52	66.67	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
R1DMS8_EMIHU	3.930e-52	72.88	RRM domain-containing protein n=1 Tax=Emiliania hu...	[more]
A0A067D1A1_SAPPC	5.960e-52	74.36	Pre-mRNA branch site p14-like protein n=4 Tax=Sapr...	[more]
A0A0M0JX52_9EUKA	3.120e-51	69.11	Pre-mRNA branch site p14-like protein n=1 Tax=Chry...	[more]
A0A7S3SDL9_9SPIT	4.560e-51	69.42	Hypothetical protein n=1 Tax=Strombidinopsis acumi...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..133
None	No IPR available	PANTHER	PTHR12785	splicing factor 3B	coord: 10..136
None	No IPR available	PANTHER	PTHR12785:SF7	SPLICING FACTOR 3B SUBUNIT 6-LIKE PROTEIN	coord: 10..136
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 21..91 e-value: 2.0E-15 score: 67.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 22..88 e-value: 2.7E-15 score: 55.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 20..95 score: 15.75
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 16..135 e-value: 1.2E-20 score: 75.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 19..100

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig98	contig	Ecto-sp6_S_contig98:175411..179770 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig98.18754.1	mRNA_Ecto-sp6_S_contig98.18754.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig98 175232..180126 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig98.18754.1 ID=prot_Ecto-sp6_S_contig98.18754.1|Name=mRNA_Ecto-sp6_S_contig98.18754.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=144bp
MDGQRDKDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIR
LGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQARRFAL
FFLPAKMAKRMDQQAKKKELEELRAKLKVAREEDAAGDTPASK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf