prot_Ecto-sp6_S_contig96.18651.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig96.18651.1
Unique Nameprot_Ecto-sp6_S_contig96.18651.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length391
Homology
BLAST of mRNA_Ecto-sp6_S_contig96.18651.1 vs. uniprot
Match: D7FJQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ8_ECTSI)

HSP 1 Score: 668 bits (1723), Expect = 1.190e-240
Identity = 371/390 (95.13%), Postives = 374/390 (95.90%), Query Frame = 0
Query:    1 MTTAGRWAATTAAAAVTIALLRCGGAPPCHAFLASGGMAFAPQHSCRGSRHCRATSMSAADGLDLSNTAVAEVDDDGSGATSRSNVAAATAGSTPGNTDGATEKKQRNSGGAAAKAGRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSGEGEKFVNLSNKTKAGDLITVRIEDVETSKRRGAKDDKATIDFVAWGGLGAAKDENHQXXXXXXXXXXXATGVGQELDIAAEIDALPAQQQTDAESAGPEADVTM 390
            MTTAGRWAATTAAAAVTIALLRCGGAPPCHAFLASGGMAFAPQHSCRGSRHCRATSMSAADGLDLSNTAVAEVDDDGSGATSRSNVAA  AGSTPGNT    EK        AAKAGRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNS EG+KFVNLSNKTK GDLITVRIED+ETSKRRGAKDDKATIDFVAWGGLGAAKDENHQXXXXXXXXXXXATGVGQELDIAAEIDALPAQQ+TDAESAGPEADVTM
Sbjct:    1 MTTAGRWAATTAAAAVTIALLRCGGAPPCHAFLASGGMAFAPQHSCRGSRHCRATSMSAADGLDLSNTAVAEVDDDGSGATSRSNVAATAAGSTPGNTGXXXEKXXXXXXXXAAKAGRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSEEGQKFVNLSNKTKPGDLITVRIEDIETSKRRGAKDDKATIDFVAWGGLGAAKDENHQXXXXXXXXXXXATGVGQELDIAAEIDALPAQQRTDAESAGPEADVTM 390          
BLAST of mRNA_Ecto-sp6_S_contig96.18651.1 vs. uniprot
Match: A0A835YYC3_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.030e-16
Identity = 81/268 (30.22%), Postives = 114/268 (42.54%), Query Frame = 0
Query:  121 IKELKTGDKVIGYVADTTNFAAFVDCSVVR-----------------------QGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCE-----------VEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINK---------------------DKVLKLRDSKRQRS---RNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSGEGEKFVNLSNKTKAGDLITVRIEDVETSKRRG-AKDDKATIDFV 329
            + ELKTG ++IG V D + +AAF+DC V R                       +G+  K+ P  GFLH +DI R                           +KKG H++ YVKDVFPN+GR T++LDP I +                     +KV  +R  KR+ +   R SRR+           GD V G + +V E  LLVDV    L  +    IR +  GE   NL +  + G  +  R+  V  + + G AK     +DFV
Sbjct:   94 LSELKTGQRLIGSVVDVSPYAAFLDCGVSRSXXXXXXXXXXXXXXXXXXXXXXRGAGGKLCPCHGFLHRSDINRAAXXXXXXXXXXXXXXXXXXXDTGAAALKKGSHVSVYVKDVFPNSGRFTVTLDPAITRKKAPPRSFMNGIVALDSAFTREKVSFMRQKKREATTIARRSRRDATSTDPSEFKDGDEVVGVINKVTEKGLLVDVKTVSLLKMPIGAIRQARGGEFIENLRDLAQPGQSVRGRV--VSAADKDGQAKLRLEFVDFV 359          
BLAST of mRNA_Ecto-sp6_S_contig96.18651.1 vs. uniprot
Match: W7TQN5_9STRA (Nucleic acid-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQN5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.690e-15
Identity = 52/141 (36.88%), Postives = 80/141 (56.74%), Query Frame = 0
Query:  102 TEKKQRNSGGAAAKAGRR--WIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDI-----------KRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKR 229
            T+K + +S G+ +K  +    ++ L+ G ++ G V   T FAAF+D  VVR+G   K+V     LH  D+            +P  LE  P V      +++GIH++ YVKDVFPN+GR +++LDP+I+K KV+  R  KR
Sbjct:   84 TDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNV------IRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKR 218          
BLAST of mRNA_Ecto-sp6_S_contig96.18651.1 vs. uniprot
Match: K8Z3D9_NANGC (UV excision repair protein RAD23 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3D9_NANGC)

HSP 1 Score: 85.1 bits (209), Expect = 3.060e-14
Identity = 52/141 (36.88%), Postives = 80/141 (56.74%), Query Frame = 0
Query:  102 TEKKQRNSGGAAAKAGRR--WIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDI-----------KRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKR 229
            T+K + +S G+ +K  +    ++ L+ G ++ G V   T FAAF+D  VVR+G   K+V     LH  D+            +P  LE  P V      +++GIH++ YVKDVFPN+GR +++LDP+I+K KV+  R  KR
Sbjct:   84 TDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNV------IRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKR 218          
BLAST of mRNA_Ecto-sp6_S_contig96.18651.1 vs. uniprot
Match: A0A7S2UWN5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.420e-13
Identity = 57/173 (32.95%), Postives = 90/173 (52.02%), Query Frame = 0
Query:  117 GRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKRQ--RSRNSRRERLHKKGRRHAV-----GDIVEGYVREVHESMLLVDVMFAQLSVLRASNI 282
            G  W+K LKTG    G V   TNF  F++C +VR G K  +  V G LH TD+     +      K  +V ++KG+ +  YVK VFP +GR +L++DP I + K+ + R  ++Q  + R S  E    +     V     GD+VEG  + V    +  D+   + ++L+AS++
Sbjct:  137 GMVWLKTLKTGMPFYGGVKSVTNFGVFLECGIVRPGRKGTVTRVQGMLHKTDLAPSMKVPFQYRPKATKV-LEKGMTVKCYVKAVFPQSGRFSLTMDPTITRAKLREQRQRRKQGLKVRYSASEMKAWEPEVEEVKEANPGDVVEGTCKCVKNFGMYFDIGAEKSALLKASDL 308          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18651.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJQ8_ECTSI1.190e-24095.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYC3_9STRA7.030e-1630.22S1 motif domain-containing protein n=1 Tax=Tribone... [more]
W7TQN5_9STRA7.690e-1536.88Nucleic acid-binding protein n=2 Tax=Monodopsidace... [more]
K8Z3D9_NANGC3.060e-1436.88UV excision repair protein RAD23 (Fragment) n=1 Ta... [more]
A0A7S2UWN5_9STRA2.420e-1332.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 125..213
e-value: 6.9E-6
score: 35.6
coord: 248..329
e-value: 0.14
score: 21.2
NoneNo IPR availableGENE3D2.40.50.140coord: 247..319
e-value: 1.1E-7
score: 33.8
NoneNo IPR availableGENE3D2.40.50.140coord: 118..218
e-value: 4.4E-8
score: 35.0
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..390
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..39
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..31
score: 0.511
IPR003029S1 domainPROSITEPS50126S1coord: 250..323
score: 10.369
IPR003029S1 domainPROSITEPS50126S1coord: 127..213
score: 8.862
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 247..317
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 121..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:502403..505957 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18651.1mRNA_Ecto-sp6_S_contig96.18651.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig96 501769..506110 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig96.18651.1 ID=prot_Ecto-sp6_S_contig96.18651.1|Name=mRNA_Ecto-sp6_S_contig96.18651.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=391bp
MTTAGRWAATTAAAAVTIALLRCGGAPPCHAFLASGGMAFAPQHSCRGSR
HCRATSMSAADGLDLSNTAVAEVDDDGSGATSRSNVAAATAGSTPGNTDG
ATEKKQRNSGGAAAKAGRRWIKELKTGDKVIGYVADTTNFAAFVDCSVVR
QGSKNKIVPVTGFLHLTDIKRPYALEGTPGVKDCEVEVKKGIHLTAYVKD
VFPNAGRMTLSLDPNINKDKVLKLRDSKRQRSRNSRRERLHKKGRRHAVG
DIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSGEGEKFVNLSNKTKA
GDLITVRIEDVETSKRRGAKDDKATIDFVAWGGLGAAKDENHQEDDASSA
AAAAATGVGQELDIAAEIDALPAQQQTDAESAGPEADVTM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR003029S1_domain
IPR012340NA-bd_OB-fold