prot_Ecto-sp6_S_contig96.18613.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig96.18613.1
Unique Nameprot_Ecto-sp6_S_contig96.18613.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length344
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18613.1 vs. uniprot
Match: D8LH26_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH26_ECTSI)

HSP 1 Score: 592 bits (1527), Expect = 2.310e-212
Identity = 341/343 (99.42%), Postives = 342/343 (99.71%), Query Frame = 0 
Query:    1 MRSLEDSCFVKIAQSPEVSLNPQRVEKALFSKNATELVRRSTEIGAAGGNGKGAMDTVRLRQKIITKLVEEGRGMAGSFPAPPAFLDKSFTSVSLVNSKIGDSFIRDTLSMRCPMLRSVDLTACFYIRDSAIESLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNITAPGVDALCGLHPNAPRFAELDISGLNVTTHTLEVICHRCRHLEVLRIGFIEYMEDTLKDTLPPLLPNLRSLHVHWNTCITDEFLLWASQAIPRLQDLNLCGCSKVSVDGVSDMIHERQEALEKDGNAGLISAIEKVNVRYTSLSKHDIEALQAAYQGTEIVYT 343
            MRSLEDSCFVKIAQSPEVSLNPQRVE+ALFSKNATELVRRSTEIGAAGGNGKGAMDTVRLRQKIITKLVEEGRGMAGSFPAPPAFLDKSFTSVSLVNSKIGDSFIRDTLSMRCPMLRSVDLTACFYIRDSAIESLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNITAPGVDALCGLHPNAPRFAELDISGLNVTTHTLEVICHRCRHLEVLRIGFIEYMEDTLKDTLPPLLPNLRSLHVHWNTCITDEFL WASQAIPRLQDLNLCGCSKVSVDGVSDMIHERQEALEKDGNAGLISAIEKVNVRYTSLSKHDIEALQAAYQGTEIVYT
Sbjct:    1 MRSLEDSCFVKIAQSPEVSLNPQRVERALFSKNATELVRRSTEIGAAGGNGKGAMDTVRLRQKIITKLVEEGRGMAGSFPAPPAFLDKSFTSVSLVNSKIGDSFIRDTLSMRCPMLRSVDLTACFYIRDSAIESLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNITAPGVDALCGLHPNAPRFAELDISGLNVTTHTLEVICHRCRHLEVLRIGFIEYMEDTLKDTLPPLLPNLRSLHVHWNTCITDEFLSWASQAIPRLQDLNLCGCSKVSVDGVSDMIHERQEALEKDGNAGLISAIEKVNVRYTSLSKHDIEALQAAYQGTEIVYT 343
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18613.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH26_ECTSI2.310e-21299.42Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 139..164
e-value: 0.16
score: 21.1
coord: 271..296
e-value: 64.0
score: 8.3
coord: 113..138
e-value: 0.06
score: 22.5
coord: 165..190
e-value: 25.0
score: 11.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 85..184
e-value: 2.7E-13
score: 51.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 190..334
e-value: 1.6E-15
score: 58.9
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 108..227
coord: 245..296
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 109..287

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:163023..170365 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18613.1mRNA_Ecto-sp6_S_contig96.18613.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig96 163023..171038 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig96.18613.1 ID=prot_Ecto-sp6_S_contig96.18613.1|Name=mRNA_Ecto-sp6_S_contig96.18613.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=344bp
MRSLEDSCFVKIAQSPEVSLNPQRVEKALFSKNATELVRRSTEIGAAGGN
GKGAMDTVRLRQKIITKLVEEGRGMAGSFPAPPAFLDKSFTSVSLVNSKI
GDSFIRDTLSMRCPMLRSVDLTACFYIRDSAIESLLSRCSLVERLSLRNC
RKLTDMSLEHLVRHGKNIAALDIGGCFNITAPGVDALCGLHPNAPRFAEL
DISGLNVTTHTLEVICHRCRHLEVLRIGFIEYMEDTLKDTLPPLLPNLRS
LHVHWNTCITDEFLLWASQAIPRLQDLNLCGCSKVSVDGVSDMIHERQEA
LEKDGNAGLISAIEKVNVRYTSLSKHDIEALQAAYQGTEIVYT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf