prot_Ecto-sp6_S_contig94.18513.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig94.18513.1
Unique Name	prot_Ecto-sp6_S_contig94.18513.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	190

Homology

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BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 4.060e-117
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0

Query:    1 MGQAPPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQPSNPRRIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNTDSGVAGGIEGMGLPAAMQLPGMAAFMAQHSTSAAGGAQGSGVAAEQLKAAMGMTTAPAQTKIYVGN 190
            MGQAPPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQPSNPRRIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNTDSGVAGGIEGMGLPAAMQLPGMAAFMAQHSTSAAGGAQGSGVAAEQLKAAMGMTTAPAQTKIYVGN
Sbjct:  243 MGQAPPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQPSNPRRIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNTDSGVAGGIEGMGLPAAMQLPGMAAFMAQHSTSAAGGAQGSGVAAEQLKAAMGMTTAPAQTKIYVGN 432

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BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot
Match: A0A836CC18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC18_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.840e-27
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 0

Query:   46 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNTDSGVAGGIEGMGLPAAMQLPGM 146
            RIY+GSL+YEL+ESDI +IF  FG ++ VDMS D +TG+HKGFCFIEY++  SA+AAL +MNGFELAGR IKVGRP NT S    G       A M +PGM
Sbjct:  120 RIYIGSLYYELQESDILAIFGAFGQIRAVDMSKDPATGKHKGFCFIEYMEPASAEAALNSMNGFELAGRPIKVGRP-NTGSTATPG-------AGMAMPGM 212

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BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot
Match: A0A7S2WU02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU02_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.440e-23
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 0

Query:   46 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNT 124
            RIYVGSL+Y+L E DI ++F +FG +  V MS + +TG+HKGFCFIEY +  +AD AL+AMNGFELAGR IKVGRP  T
Sbjct:  139 RIYVGSLNYDLTEVDIRNVFGSFGNIIDVTMSFEPATGKHKGFCFIEYDNTPAADQALQAMNGFELAGRPIKVGRPDGT 217

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BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot
Match: W7U4B1_9STRA (PolyU-binding-splicing factor PUF60 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4B1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.020e-22
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 0

Query:   27 APGAGTRTQTAPAQPSNPRRIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNTDSG 127
            A GAG R    P+  ++  RIYVGSLHY+LKE DI  +FA FGA++ ++MS +  TGR KGF F+++   +SA  AL+ MNGF+LAGR +KVGRP    SG
Sbjct:  200 ASGAGAR----PSASNDACRIYVGSLHYDLKEDDIRKVFAPFGAIRSINMSFEPGTGRSKGFAFVDFEQAESATMALQTMNGFQLAGRTLKVGRPTPGGSG 296

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BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot
Match: A0A0U9HK97_KLENI (Putative RNA recognition motif containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HK97_KLENI)

HSP 1 Score: 100 bits (250), Expect = 1.690e-21
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 0

Query:   30 AGTRTQTAPAQPSNPRRIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNTDSGVAGGI 132
            A  +   A A P +  RIYVGS++YEL ESDI   F+ FG++  +DM  D++T +HKGFCFIE+   ++A+ AL  MN F LAGR +KVGRP N  +G+ GGI
Sbjct:   73 AAAKATAAQAPPKDACRIYVGSIYYELNESDIILAFSAFGSIHKIDMPRDAATAKHKGFCFIEFHSSEAAENALNTMNEFVLAGRKLKVGRPHNI-AGMPGGI 174

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BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot
Match: L1JR44_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JR44_GUITC)

HSP 1 Score: 100 bits (248), Expect = 2.670e-21
Identity = 46/87 (52.87%), Postives = 66/87 (75.86%), Query Frame = 0

Query:   40 QPSNPRRIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNTDS 126
            +P    R+YVGSLH++LKE+D+ +IF  FG +K ++MS++ +TG+ KG+ FIEY++   ADA  +AM+GF +AGR IKVGRP NT S
Sbjct:   93 KPPQRNRLYVGSLHFDLKEADVRAIFQPFGPIKTIEMSYEPTTGKSKGYAFIEYMNDAQADACEKAMDGFMIAGRPIKVGRPHNTVS 179

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BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot
Match: A0A7S4PQL3_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PQL3_GUITH)

HSP 1 Score: 100 bits (248), Expect = 3.190e-21
Identity = 46/87 (52.87%), Postives = 66/87 (75.86%), Query Frame = 0

Query:   40 QPSNPRRIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNTDS 126
            +P    R+YVGSLH++LKE+D+ +IF  FG +K ++MS++ +TG+ KG+ FIEY++   ADA  +AM+GF +AGR IKVGRP NT S
Sbjct:   81 KPPQRNRLYVGSLHFDLKEADVRAIFQPFGPIKTIEMSYEPTTGKSKGYAFIEYMNDAQADACEKAMDGFMIAGRPIKVGRPHNTVS 167

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BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot
Match: A0A7S2AH99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AH99_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.810e-21
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 0

Query:   46 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRP 121
            RIYVGSLHY+L E DI  +F  FG +  V MS++ +TG+ KG+CFIEY +  SA+ AL+AMNGFELAGR IKVG+P
Sbjct:  112 RIYVGSLHYDLAEHDIRGVFEAFGKITEVTMSYEPATGKSKGYCFIEYENPNSANQALQAMNGFELAGRQIKVGKP 187

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BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot
Match: A0A7S3H5S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5S2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.020e-20
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 0

Query:   46 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNTDSGV--AGGIEGMGLPAAMQLPGMAA 148
            R+YVGS+HY+LKESDI ++F+ FG +   +MS D  TGR KGFCFIE+ +   A+AA+  M+GFELAGR IKVG P         A  +   G PAA+ +P +AA
Sbjct:   87 RVYVGSIHYDLKESDIIALFSAFGKINKSEMSIDPLTGRTKGFCFIEFDEPAYAEAAM-VMDGFELAGRKIKVGWPAKAPGAAVAAPALSVSGYPAALAVPSIAA 190

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BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot
Match: A0A7S1H1Q7_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H1Q7_HEMAN)

HSP 1 Score: 95.5 bits (236), Expect = 1.290e-20
Identity = 43/79 (54.43%), Postives = 61/79 (77.22%), Query Frame = 0

Query:   46 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNT 124
            R+YVGSL+Y++K++D+  IFA FG +K +DMS++ +TG+ KGF F+E+ D   A+A   AMNGF L GRAIK+GRP +T
Sbjct:   76 RLYVGSLNYDIKDTDLRPIFAPFGPIKCIDMSYEPATGKSKGFGFVEFYDGLHAEACQMAMNGFNLGGRAIKIGRPHHT 154

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig94.18513.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWX1_ECTSI	4.060e-117	100.00	RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI...	[more]
A0A836CC18_9STRA	1.840e-27	61.39	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2WU02_9STRA	8.440e-23	63.29	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
W7U4B1_9STRA	3.020e-22	52.48	PolyU-binding-splicing factor PUF60 n=2 Tax=Monodo...	[more]
A0A0U9HK97_KLENI	1.690e-21	50.49	Putative RNA recognition motif containing protein ...	[more]
L1JR44_GUITC	2.670e-21	52.87	Uncharacterized protein n=1 Tax=Guillardia theta (...	[more]
A0A7S4PQL3_GUITH	3.190e-21	52.87	Hypothetical protein n=2 Tax=Guillardia theta TaxI...	[more]
A0A7S2AH99_9STRA	6.810e-21	61.84	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S3H5S2_9STRA	1.020e-20	50.48	Hypothetical protein (Fragment) n=1 Tax=Spumella e...	[more]
A0A7S1H1Q7_HEMAN	1.290e-20	54.43	Hypothetical protein (Fragment) n=2 Tax=Hemiselmis...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 46..119 e-value: 9.7E-23 score: 91.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 47..117 e-value: 7.5E-20 score: 70.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 45..123 score: 17.541
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 23..133 e-value: 4.7E-25 score: 90.1
None	No IPR available	PANTHER	PTHR47330	FAMILY NOT NAMED	coord: 45..124
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..36
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 37..190
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..36
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 35..122

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig94	contig	Ecto-sp6_S_contig94:163091..166586 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig94.18513.1	mRNA_Ecto-sp6_S_contig94.18513.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig94 163091..167600 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig94.18513.1 ID=prot_Ecto-sp6_S_contig94.18513.1|Name=mRNA_Ecto-sp6_S_contig94.18513.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=190bp
MGQAPPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQPSNPRRIYVG
SLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSAD
AALRAMNGFELAGRAIKVGRPLNTDSGVAGGIEGMGLPAAMQLPGMAAFM
AQHSTSAAGGAQGSGVAAEQLKAAMGMTTAPAQTKIYVGN

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf