prot_Ecto-sp6_S_contig92.18406.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig92.18406.1
Unique Nameprot_Ecto-sp6_S_contig92.18406.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length301
Homology
BLAST of mRNA_Ecto-sp6_S_contig92.18406.1 vs. uniprot
Match: A0A6H5L7K0_9PHAE (Ribosomal_L12 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K0_9PHAE)

HSP 1 Score: 485 bits (1249), Expect = 1.910e-171
Identity = 280/300 (93.33%), Postives = 284/300 (94.67%), Query Frame = 0
Query:    1 MTLATSMCRGLASGGRRCRTPAPAATWPLVQRGLDDSSKHTAVGPSSTRGCATVVAATPPAVAAAAARGRVLPAALPPVYRPDAGNGNGGRVRFSTTAGADAATEDTSGPPAAEAGXXXXXXXXXXAQSGDGEAASTVEENPLEGMVEDDGDPGPPPPLDPSIVAEPSPKVLEVMASIESLNFVEMAMLIDVFKNKLGLDELPTLSFGGADGGGESGGXDGDAPAAAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVELE 300
            MTLATSMCRGLASGGRRCRTPAPAA WPLVQRGLD SSKHTAVGPSSTRGCATVVAATPPAVAAAAARGRVL A LPPVYRPDAGNGNGGRVRFSTTAGADAATEDTSGPPAA+A XXXXXXXXXX  SGDGEAASTV+ENPL GMV+DDGDPGPPPPLDPSIV EPSPKVLEVMASIESLNFVEMAMLID+FKNKLGLDELPTLSFGGADGG     X  DAPAAAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVELE
Sbjct:    1 MTLATSMCRGLASGGRRCRTPAPAAAWPLVQRGLDVSSKHTAVGPSSTRGCATVVAATPPAVAAAAARGRVLQAGLPPVYRPDAGNGNGGRVRFSTTAGADAATEDTSGPPAAKADXXXXXXXXXXXXSGDGEAASTVDENPLGGMVDDDGDPGPPPPLDPSIVTEPSPKVLEVMASIESLNFVEMAMLIDLFKNKLGLDELPTLSFGGADGGXXXXXXXEDAPAAAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVELE 300          
BLAST of mRNA_Ecto-sp6_S_contig92.18406.1 vs. uniprot
Match: A0A7S2SJD4_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SJD4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.810e-24
Identity = 63/135 (46.67%), Postives = 88/135 (65.19%), Query Frame = 0
Query:  166 EPSPKVLEVMASIESLNFVEMAMLIDVFKNKLGLDELPTLSFGGADGGGESGGXDGDAPAAAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVELE 300
            E SP+V E+   +  L+FVE+ +L ++  +K+G+     +      GGG + G           KT F +K+TG+  K+KIKVIKEVR ITGLGLR+AK MVE  P VVK+D+K +EAE +K KLE++GATVE+E
Sbjct:   91 EMSPRVKEIFQKVLQLDFVEIHLLGELVYDKMGMSISDAMRQASV-GGGSAAGASAKEETKEEVKTAFDLKLTGWDAKSKIKVIKEVRSITGLGLRDAKAMVEGFPNVVKKDIKMEEAEELKKKLESIGATVEIE 224          
BLAST of mRNA_Ecto-sp6_S_contig92.18406.1 vs. uniprot
Match: A0A7S1EUI7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUI7_9RHOD)

HSP 1 Score: 105 bits (261), Expect = 2.420e-23
Identity = 66/138 (47.83%), Postives = 90/138 (65.22%), Query Frame = 0
Query:  166 EPSPKVLEVMASIESLNFVEMAMLIDVFKNKLGLDELPTLSFGGADGGGESGGXDGDAPAAAA---EKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVELE 300
            E SPKV +++  I  LN +E+  L    K++LGL +LP++  GG      +     DAPAAA    EKT F V++TGF    KI +IKE+R +TGLGL+EAK +V+S P VVKE+L +D+A A++ KL A GAT ELE
Sbjct:   91 ELSPKVSKLLDEIVQLNMLEVKELSSGLKDRLGLADLPSMPMGGMMAMPAAPAQAADAPAAAPKVEEKTSFTVRLTGFDAAKKIGIIKEIRTLTGLGLKEAKALVDSAPVVVKENLTKDDAAALQEKLTAAGATSELE 228          
BLAST of mRNA_Ecto-sp6_S_contig92.18406.1 vs. uniprot
Match: A0A7S0Q449_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q449_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 3.030e-23
Identity = 69/145 (47.59%), Postives = 89/145 (61.38%), Query Frame = 0
Query:  162 SIVAEPSPKVLEVMASIESLNFVEMAMLIDVFKNKLGLDE---LPTLSFGGADGGGESGGXDGDAPA---AAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVELE 300
            S  AEPSPKV E++  I +L  +E A L D  K +LG+     +P      A G G   G    APA      EKT F V++  F   +KIKVIKEVR ITGLGL+EAKE+VE+ P+ +K D+K++EAE +KAKLE VG  V +E
Sbjct:   67 SPAAEPSPKVQELVDQISALTLLEAAQLTDALKERLGISSAMMMPAAPMAAAAGPGP--GLASAAPAEEEVVPEKTAFSVRLEKFDAASKIKVIKEVRSITGLGLKEAKELVENAPKELKGDIKKEEAEVIKAKLEEVGGVVVIE 209          
BLAST of mRNA_Ecto-sp6_S_contig92.18406.1 vs. uniprot
Match: A0A1E7FPD8_9STRA (Ribosomal_L12-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FPD8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.290e-23
Identity = 63/134 (47.01%), Postives = 86/134 (64.18%), Query Frame = 0
Query:  170 KVLEVMASIESLNFVEMAMLIDVFKNKLGLD--ELPTLSFGGADGGGESGGXDGDAPA--AAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVEL 299
            KV  +   +  L+ +E+ +L  V   ++G+   E      G   GG    G  GDA A     EKTIF +K+ GF  K+KIKVIKEVR I GLGL+EAKEMVE  P+V++++LK+++AE +K +LEAVGATVEL
Sbjct:    1 KVQAIFGKVLFLDMIEVHLLTSVVNEQMGISWKETEQRMSGRGGGGSTKAGAGGDAAADEPVEEKTIFDLKLLGFDAKSKIKVIKEVRNIAGLGLKEAKEMVEGAPKVIQKELKKEKAEELKLQLEAVGATVEL 134          
BLAST of mRNA_Ecto-sp6_S_contig92.18406.1 vs. uniprot
Match: A0A7S4B316_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B316_CHRCT)

HSP 1 Score: 103 bits (257), Expect = 6.490e-23
Identity = 64/133 (48.12%), Postives = 79/133 (59.40%), Query Frame = 0
Query:  165 AEPSPKVLEVMASIESLNFVEMAMLIDVFKNKLGLDELPTLSFGGADGGGESGGXDGDAPAAAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATV 297
            A  SPK+ E++  I SL  +E A L D  K KLG+     +  GGA        X        AEKT F VK+  F   AKIK+IKEVR +TGLGL+EAKEMVE  P  VK+D+K++EAE +K KLEA G  V
Sbjct:   78 APASPKIQELVDQISSLTLLEAAELTDALKEKLGISSAMMMPMGGAPMAXXXXXXXXXXXXXVAEKTAFTVKLESFDASAKIKLIKEVRALTGLGLKEAKEMVEKTPVEVKKDIKKEEAETIKGKLEAAGGVV 210          
BLAST of mRNA_Ecto-sp6_S_contig92.18406.1 vs. uniprot
Match: A0A2S6TCW4_9PROT (50S ribosomal protein L7/L12 n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6TCW4_9PROT)

HSP 1 Score: 99.4 bits (246), Expect = 2.710e-22
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  173 EVMASIESLNFVEMAMLIDVFKNKLGLDELPTLSFGGADGGGESGGXDGDAPAAAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVEL 299
            ++   + +L  +E A L  + + K G+     ++   A  G E GG       AAAEK  F V++T FGDK KI VIKEVRVITGLGL+EAK++VE  P  +KEDL +DEAE +K KLE  GATVEL
Sbjct:    6 KIAEDLSNLTVIEAAELSTMLEEKWGVSAAAPVAVAAAAPGVEGGGD------AAAEKDSFNVELTSFGDK-KINVIKEVRVITGLGLKEAKDLVEGAPNTIKEDLTKDEAEKIKTKLEEAGATVEL 125          
BLAST of mRNA_Ecto-sp6_S_contig92.18406.1 vs. uniprot
Match: A0A6P4A6S4_ZIZJJ (uncharacterized protein LOC107424560 n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4A6S4_ZIZJJ)

HSP 1 Score: 101 bits (252), Expect = 3.060e-22
Identity = 61/141 (43.26%), Postives = 86/141 (60.99%), Query Frame = 0
Query:  167 PSPKVLEVMASIESLNFVEMAMLIDVFKNKLGLDELPTL-------SFGGADGGGESGGXDGDAPAAAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVELE 300
            P  KV+ ++  I  L  +E+A L +V + KLG+ E+P++        FGG  G  + G   G      AEKT F VK+ GF   +KIKVIKEVR  T LGL+EAK++VE  P ++K+   +DEAEA+ AK++ VGA V +E
Sbjct:   68 PPEKVVSIVDDISDLTLLEVADLTEVLREKLGVKEMPSMMVMMPGMGFGGLKGASKGGAAAGKGEEKKAEKTAFDVKLEGFDAASKIKVIKEVRTFTDLGLKEAKDLVEKAPTLLKKGATKDEAEAIIAKMKEVGAKVTME 208          
BLAST of mRNA_Ecto-sp6_S_contig92.18406.1 vs. uniprot
Match: V4SP36_CITCL (Uncharacterized protein n=3 Tax=Citrus TaxID=2706 RepID=V4SP36_CITCL)

HSP 1 Score: 100 bits (250), Expect = 3.410e-22
Identity = 62/141 (43.97%), Postives = 90/141 (63.83%), Query Frame = 0
Query:  166 EPSPKVLEVMASIESLNFVEMAMLIDVFKNKLGLDELPTL-----SFGGADGGGESGGXDGDAPAAA-AEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVELE 300
            EPS KV  ++  I  L+ VE+  L DV +NKLG+ E+P +       G +  G  + G  G   A    EKT+F +K+ G+G +AK+KVIKEVR  TGLGL+E+KE+VE +P ++K  + +DEA+ + AKL+ VGA V +E
Sbjct:   45 EPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 185          
BLAST of mRNA_Ecto-sp6_S_contig92.18406.1 vs. uniprot
Match: A0A1Z5JIM6_FISSO (Ribosomal_L12 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIM6_FISSO)

HSP 1 Score: 102 bits (253), Expect = 3.470e-22
Identity = 71/148 (47.97%), Postives = 94/148 (63.51%), Query Frame = 0
Query:  155 PPPPLDPSIVAEPSPKVLEVMAS-IESLNFVEMAMLIDVFKNKLGLDE--LPTLSFGGADGGGESGGXDGDAPAAAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVEL 299
            P PPL+ S  A P+P+ L  +A  I +L  +EM  L++      G +E  L        D G   G  + +AP A   KT+F VK+TGF   +KIKVIKEVR I GLGL+EAKE VE +P V+ +DLK+D+A+ +KAKLEAVGATVE+
Sbjct:   85 PAPPLEDSSGAPPTPEYLNALADEIVNLTVLEMNELVNKMAEHYGFNEGMLSPDDVAAEDMG--DGEEETEAPVA---KTVFDVKLTGFDASSKIKVIKEVRAIAGLGLKEAKEFVEGVPGVLMKDLKQDKADEIKAKLEAVGATVEI 227          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18406.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7K0_9PHAE1.910e-17193.33Ribosomal_L12 domain-containing protein n=2 Tax=Ec... [more]
A0A7S2SJD4_9STRA5.810e-2446.67Hypothetical protein n=2 Tax=Eucampia antarctica T... [more]
A0A7S1EUI7_9RHOD2.420e-2347.83Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S0Q449_9EUKA3.030e-2347.59Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A1E7FPD8_9STRA6.290e-2347.01Ribosomal_L12-domain-containing protein (Fragment)... [more]
A0A7S4B316_CHRCT6.490e-2348.12Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A2S6TCW4_9PROT2.710e-2248.8250S ribosomal protein L7/L12 n=4 Tax=Alphaproteoba... [more]
A0A6P4A6S4_ZIZJJ3.060e-2243.26uncharacterized protein LOC107424560 n=1 Tax=Zizip... [more]
V4SP36_CITCL3.410e-2243.97Uncharacterized protein n=3 Tax=Citrus TaxID=2706 ... [more]
A0A1Z5JIM6_FISSO3.470e-2247.97Ribosomal_L12 domain-containing protein n=2 Tax=Fi... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 226..300
e-value: 3.6E-26
score: 92.9
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 229..300
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 233..300
e-value: 3.6E-25
score: 88.1
IPR000206Ribosomal protein L7/L12TIGRFAMTIGR00855TIGR00855coord: 173..299
e-value: 5.5E-28
score: 95.9
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 168..300
score: 18.361
NoneNo IPR availablePANTHERPTHR45987FAMILY NOT NAMEDcoord: 167..300
NoneNo IPR availablePRODOMPD001326coord: 245..299
e-value: 2.0E-12
score: 176.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:244551..248859 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18406.1mRNA_Ecto-sp6_S_contig92.18406.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig92 244380..249640 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig92.18406.1 ID=prot_Ecto-sp6_S_contig92.18406.1|Name=mRNA_Ecto-sp6_S_contig92.18406.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=301bp
MTLATSMCRGLASGGRRCRTPAPAATWPLVQRGLDDSSKHTAVGPSSTRG
CATVVAATPPAVAAAAARGRVLPAALPPVYRPDAGNGNGGRVRFSTTAGA
DAATEDTSGPPAAEAGKGGGGGGGSGAQSGDGEAASTVEENPLEGMVEDD
GDPGPPPPLDPSIVAEPSPKVLEVMASIESLNFVEMAMLIDVFKNKLGLD
ELPTLSFGGADGGGESGGGDGDAPAAAAEKTIFKVKVTGFGDKAKIKVIK
EVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVELE
*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR013823Ribosomal_L7/L12_C
IPR000206Ribosomal_L7/12