prot_Ecto-sp6_S_contig9.18096.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig9.18096.1
Unique Nameprot_Ecto-sp6_S_contig9.18096.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length293
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18096.1 vs. uniprot
Match: A0A6H5JEA9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA9_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 8.020e-90
Identity = 189/230 (82.17%), Postives = 190/230 (82.61%), Query Frame = 0 
Query:    1 MISPSVLQRACLASLFVTLTPSSLQTSLARAAASSPPQHGSSTATAFLAMPPGRHGDGLGDAAGGAASGVVDVSRLQHFDDAFLNKNRPPHPXXXXXXXXXXXXXXXXXHSGDNNSFGRQQQHEPLSSRLSWAKVHWAPRKRTSRLITTAAGGMSQQQTTQLSSXXXXXXXXXXXPSRQQXXXXXXXXXXLSPTSTSPPGRTSRLTTAATFDSGDAAGVAQRPRLNSWAK 230
            MISPSVLQRACLASLFVTLTPSSLQTSLARAAAS    H SSTATAFLAMPPGRHGDGLGD AGGAASG VDVSRLQH DDAF N NRP HP     XXXXXXXXXXXX   DN+SFGRQQQHEP SSRLSWAKVHWAPRKRTSRLITTAA G SQQQTTQLS XXXXXXXXXXX  RQ           L PTSTSPPGRTSR T AATFDSGD AGVAQRPRLNSWAK
Sbjct:    1 MISPSVLQRACLASLFVTLTPSSLQTSLARAAASXXXXHDSSTATAFLAMPPGRHGDGLGDTAGGAASGGVDVSRLQHLDDAFFNNNRPSHPLQRREXXXXXXXXXXXXXXXDNSSFGRQQQHEPPSSRLSWAKVHWAPRKRTSRLITTAASGRSQQQTTQLSXXXXXXXXXXXXXXRQHQQQG------LPPTSTSPPGRTSRFTMAATFDSGDPAGVAQRPRLNSWAK 224
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BLAST of mRNA_Ecto-sp6_S_contig9.18096.1 vs. uniprot
Match: D8LLZ5_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.840e-16
Identity = 57/77 (74.03%), Postives = 57/77 (74.03%), Query Frame = 0 
Query:  154 MSQQQTTQLSSXXXXXXXXXXXPSRQQXXXXXXXXXXLSPTSTSPPGRTSRLTTAATFDSGDAAGVAQRPRLNSWAK 230
            MSQQQTTQLSS           PSR  XXXX      LSPTSTSPPGRTSRLTTAATFDSGDAAGV QRPRLNSWAK
Sbjct:    1 MSQQQTTQLSSWAKVHWTPRRRPSRXXXXXXR-----LSPTSTSPPGRTSRLTTAATFDSGDAAGVVQRPRLNSWAK 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18096.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEA9_9PHAE8.020e-9082.17Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
D8LLZ5_ECTSI1.840e-1674.03Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..292
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.471

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:955669..957039 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18096.1mRNA_Ecto-sp6_S_contig9.18096.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig9 955669..960033 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18096.1 ID=prot_Ecto-sp6_S_contig9.18096.1|Name=mRNA_Ecto-sp6_S_contig9.18096.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=293bp
MISPSVLQRACLASLFVTLTPSSLQTSLARAAASSPPQHGSSTATAFLAM
PPGRHGDGLGDAAGGAASGVVDVSRLQHFDDAFLNKNRPPHPPQRREARA
AAAAAVAAVHSGDNNSFGRQQQHEPLSSRLSWAKVHWAPRKRTSRLITTA
AGGMSQQQTTQLSSWAKVHWTPRRRPSRQQQQQQQQQQQRLSPTSTSPPG
RTSRLTTAATFDSGDAAGVAQRPRLNSWAKRGSPLGPSASGPRTNPADQQ
SSRRARRGDMPPRHRQPYGESRGRGRGRGRERAAAGRWRGSP*
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