prot_Ecto-sp6_S_contig9.18016.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig9.18016.1
Unique Nameprot_Ecto-sp6_S_contig9.18016.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length184
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18016.1 vs. uniprot
Match: D7G8H4_ECTSI (WD repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H4_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 8.450e-61
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0 
Query:    1 MMSSSAESNKRERGQSIVVREIRSPSAGGGRAGGDISEIAFSADGAHLLTGAKNLAVRIWGTRSGEVELLAPPLAGSNEDGGYHAGHLSCDIVLHHPSRGMLM 103
            MMSSSAESNKRERGQSIVVREIRSPSAGGGRAGGDISEIAFSADGAHLLTGAKN AVRIWGTRSGEVELLAPPLAGSNEDGGYHAGHLSCDIVLHHPSRGMLM
Sbjct:    5 MMSSSAESNKRERGQSIVVREIRSPSAGGGRAGGDISEIAFSADGAHLLTGAKNFAVRIWGTRSGEVELLAPPLAGSNEDGGYHAGHLSCDIVLHHPSRGMLM 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18016.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H4_ECTSI8.450e-6199.03WD repeat-containing protein n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 31..182
e-value: 4.4E-9
score: 37.9
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 29..70
score: 8.518
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 36..70
score: 9.472
IPR011044Quinoprotein amine dehydrogenase, beta chain-likeSUPERFAMILY50969YVTN repeat-like/Quinoprotein amine dehydrogenasecoord: 19..178

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:294700..295946 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18016.1mRNA_Ecto-sp6_S_contig9.18016.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig9 294700..295946 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18016.1 ID=prot_Ecto-sp6_S_contig9.18016.1|Name=mRNA_Ecto-sp6_S_contig9.18016.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=184bp
MMSSSAESNKRERGQSIVVREIRSPSAGGGRAGGDISEIAFSADGAHLLT
GAKNLAVRIWGTRSGEVELLAPPLAGSNEDGGYHAGHLSCDIVLHHPSRG
MLMAAGGATGGVLVWDCCGPSTGSDGSSSGGSSSSSSSSKEGLGTRPTSD
LRNNGHEYGVPVCHLAAYPDGSFFVSADTTTLKA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR011044Quino_amine_DH_bsu