prot_Ecto-sp6_S_contig87.17823.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig87.17823.1
Unique Nameprot_Ecto-sp6_S_contig87.17823.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length910
Homology
BLAST of mRNA_Ecto-sp6_S_contig87.17823.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 659 bits (1699), Expect = 3.540e-221
Identity = 882/909 (97.03%), Postives = 887/909 (97.58%), Query Frame = 0
Query:    1 MSMLTEPGAANISSSXXXXXXXXXXXXXXXXLGAKASTQPAAARTKREKASSGFSQRGAAAGGPRTGRALSRNGRASFRTKLALDKIDAVRKDDWRRVLVELDKAELAEGRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYXXXXXXXXXXXXXXXXXXMIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAAGLLREMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSGAANGXXXXXXXXXXXXDPVEVADACSYNTALSACEVGEQWERALSLLRDMPKRGVKPVVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQVQRDMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLEMAREKGGERGSLEGAGAAVPNPSTAASEEAAR 909
            MSMLTEPGAAN++SS XXXXXXXXXXXXXXX         AAARTKREK SS FSQRG+AAGGPRTGRALSR+GRASFRTKLALDKIDAVRKDDWRR+LVELDKAELAEGRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVS XXXXXXXXXXXXXXXXXX IREMEAEYGIKPNHITYQAAIKVCGRCGKADEAA LL EMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSGAANGXXXXXXXX    DPVEVADACSYNTALSACEVGEQW RALSLLRDMPKRGVKPVVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQVQRDMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLEMAREKGGER SLEGAGAAVPNPSTAASEEAAR
Sbjct:    1 MSMLTEPGAANVASSSXXXXXXXXXXXXXXXX--XXXXXXAAARTKREKGSSSFSQRGSAAGGPRTGRALSRDGRASFRTKLALDKIDAVRKDDWRRILVELDKAELAEGRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSXXXXXXXXXXXXXXXXXXXXIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSGAANGXXXXXXXX----DPVEVADACSYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQVQRDMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLEMAREKGGERDSLEGAGAAVPNPSTAASEEAAR 903          
BLAST of mRNA_Ecto-sp6_S_contig87.17823.1 vs. uniprot
Match: D7G1L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.440e-9
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 0
Query:   72 RNGRASF-RTKLALDKIDAVRKDDWRRVLVELDKAELAE---GRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDAC 171
            + GRA+F R++  + KI  + + +WR V+ EL++AE AE   G A           VS+  Y+ C+  +AKC RW EAL +  RM   G  PNS+C+NA L+AC
Sbjct:  102 KKGRAAFARSRDFVVKIRGMSRWNWRGVMRELEEAETAEAKFGEAEKGTTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEAC 205          
BLAST of mRNA_Ecto-sp6_S_contig87.17823.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 8.960e-8
Identity = 62/241 (25.73%), Postives = 89/241 (36.93%), Query Frame = 0
Query:  127 FVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYXXXXXXXXXXXXXXXXXXMIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAAGLLREMKDGGVPLKTSVYSAVFNA----------------------------------FRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGG 333
            ++Y+ CI+ +A+C RW +AL IL  M         +  NAA +A            L  D  A+GI+                              A   ++P+  +Y AAI  CG CG+   A  LLR M++ GVP     Y+A  +A                                      + W      + E+    V P+VF +  AI  C   G+WE ALDLL    E+GG
Sbjct:   15 YMYNACITALARCGRWRQALAILDHMR--------FTANAA-EAXXXXXXXXXXXALKADP-AAGID----------------------GGAAMSPPAPAAVRPDVFSYSAAITACGNCGEWRRALALLRVMREQGVPPNVVSYNAAAHACVGDQRKLGETRINGNNGVAEPRGHAAEEEKXXXXXXXEGWALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLE---EMGG 220          
BLAST of mRNA_Ecto-sp6_S_contig87.17823.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.200e-7
Identity = 59/229 (25.76%), Postives = 87/229 (37.99%), Query Frame = 0
Query:  127 FVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYXXXXXXXXXXXXXXXXXXMIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAAGLLREMKDGGVPLKTSVYSAVFNAFRRV---------------------------DHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFM 328
            ++Y+ CI+ +A+C RW +AL IL  M         +  NAA  A   A  V  AL   +   A+G++                              A   ++P+  +Y AAI  CG CG+   A  LLR M++ GV    +   A     R++                           + W      + E+    V P+VF +  AI  C   G+WE ALDLL  M
Sbjct:  275 YMYNACITALARCGRWRQALAILDHMR--------FSANAAEAAA--AATVDTAL---KADPAAGVD----------------------GGAAMSPPAPAAVRPDVFSYSAAITACGNCGEWRRALALLRVMREQGVVSYNAAAHACVGDQRKIGETRINGNNGVAEQRGRAAEEXXXXXEEGWAIVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLEEM 468          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17823.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0M5_ECTSI3.540e-22197.03PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
D7G1L0_ECTSI3.440e-940.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMP8_ECTSI8.960e-825.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUL4_9PHAE2.200e-725.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 88..225
e-value: 1.0E-22
score: 83.1
coord: 332..447
e-value: 1.9E-35
score: 124.9
coord: 226..331
e-value: 5.4E-23
score: 84.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 620..779
e-value: 9.4E-45
score: 155.3
coord: 458..596
e-value: 2.3E-44
score: 154.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 780..884
e-value: 5.9E-24
score: 86.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 465..494
e-value: 0.0057
score: 16.8
coord: 782..810
e-value: 0.19
score: 12.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 183..243
e-value: 3.8E-10
score: 39.7
coord: 696..756
e-value: 2.2E-9
score: 37.3
coord: 589..650
e-value: 1.3E-10
score: 41.2
coord: 360..418
e-value: 2.3E-13
score: 50.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 640..673
e-value: 3.1E-5
score: 21.9
coord: 233..263
e-value: 8.1E-4
score: 17.4
coord: 339..373
e-value: 1.3E-10
score: 38.8
coord: 569..603
e-value: 2.8E-7
score: 28.3
coord: 499..533
e-value: 2.1E-8
score: 31.9
coord: 374..408
e-value: 2.4E-7
score: 28.5
coord: 674..708
e-value: 1.3E-5
score: 23.0
coord: 163..196
e-value: 1.0E-4
score: 20.2
coord: 604..637
e-value: 9.3E-7
score: 26.6
coord: 711..744
e-value: 2.6E-5
score: 22.1
coord: 305..338
e-value: 6.1E-4
score: 17.8
coord: 816..848
e-value: 4.0E-7
score: 27.8
coord: 465..496
e-value: 7.4E-4
score: 17.5
coord: 534..567
e-value: 1.5E-5
score: 22.8
coord: 197..231
e-value: 1.3E-5
score: 23.0
coord: 409..433
e-value: 3.9E-4
score: 18.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 812..859
e-value: 1.9E-7
score: 31.2
coord: 300..349
e-value: 1.9E-9
score: 37.6
coord: 496..544
e-value: 1.0E-11
score: 44.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 301..335
score: 9.032
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 407..441
score: 8.966
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 602..636
score: 11.192
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 637..671
score: 11.477
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 160..194
score: 9.482
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 672..706
score: 10.578
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 231..265
score: 10.633
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 743..777
score: 8.528
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 125..159
score: 8.462
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 813..847
score: 11.203
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 778..812
score: 8.912
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 195..230
score: 8.923
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 707..742
score: 8.934
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 462..496
score: 10.896
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 848..882
score: 7.432
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 567..601
score: 12.529
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 532..566
score: 11.696
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 497..531
score: 12.047
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 372..406
score: 12.408
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 337..371
score: 13.614
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 266..300
score: 7.125
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 556..711
coord: 692..878
coord: 267..435
coord: 132..261
coord: 461..583

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:433197..444314 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17823.1mRNA_Ecto-sp6_S_contig87.17823.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig87 433197..444314 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig87.17823.1 ID=prot_Ecto-sp6_S_contig87.17823.1|Name=mRNA_Ecto-sp6_S_contig87.17823.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=910bp
MSMLTEPGAANISSSSSTSSSDRNPSPGAGGLGAKASTQPAAARTKREKA
SSGFSQRGAAAGGPRTGRALSRNGRASFRTKLALDKIDAVRKDDWRRVLV
ELDKAELAEGRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILA
RMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYN
CAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCGKADE
AAGLLREMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKP
NVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGK
AGQGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIFREME
RAGVRPNIITHNAVMSACIAAGQWEEALDFFTEVVDGSGAANGGGGGGGG
GGPPPDPVEVADACSYNTALSACEVGEQWERALSLLRDMPKRGVKPVVIS
YNTVISACGKCGEGDQALALLREMPERGLMPDVITFNSAIAALSNSGRPD
DAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGAGVS
PTVICYTAAIRACGEAGKGDEALSLLREMPTAGVTPNLFSYSATISACGK
DGRWEQGLALLNEMPALGLTPNEFCYTAAITGCGIGGQWERAVATFRSMI
ASGIQPTVVGYTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAV
ILACGNGGQGHLVAQVQRDMASAGITPRLTGYLSAIRASGECGNWSEATS
LLGEMEAAGVPPTVSCYNAAITACGKSGKWQEALDLLDEMPGKGLVRDSG
TLSAAISACQKAGRGVKAAGLVEEMLEMAREKGGERGSLEGAGAAVPNPS
TAASEEAAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat