prot_Ecto-sp6_S_contig87.17814.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig87.17814.1
Unique Nameprot_Ecto-sp6_S_contig87.17814.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length699
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17814.1 vs. uniprot
Match: A0A6H5JAX5_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX5_9PHAE)

HSP 1 Score: 553 bits (1424), Expect = 7.960e-184
Identity = 419/600 (69.83%), Postives = 431/600 (71.83%), Query Frame = 0 
Query:    1 MPSPTVMSFVSPPNTGAQLGAVLHVGAVPPPRGGQVFMCSTTATTATRSNDEAVREAATTGDDAASPGLTPAAAPLAGGRMVGLSRAREAAAAARDVGAMTDGPGNSGSVLEQQVVPAATTR--RVRQRPRSDDQAAPSTAAAREARGSPAEQRFYGSPKEVEASANKEGVSVRALRRSRALVRRIKRIPKTGSSWEAALRELDRAEREEARHRXXXXXXXXXXXDAGQDGEPLDLM--------------------------------WREALGLLHHIRALGITPNVKSVSAALNACGQAGQWQRCLELLGEAREWGTELNEASTALRLLREMEERGIEATASNYKHALYAC--------------------------------------------------CDSKTGENWEAAAALLRRSDTLRNNYFYGRVIMACRQAGRWQKALEVLRDMSRVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLLRAMRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFDEM 516
            M SPT M FVSPPNTGAQLGAVLHVGAVPPPRGGQVFMCSTTATTATRSNDEAVREAATTGDDAA P LTPAAAPLAGGRM GLSRAREAAAAARDVGAMTDGPGN+GS+LE            RVRQRPRSDDQAAPSTAAAR ARGSPAEQ  YGS +EVEASA KEGVS RALRRSRALVRRIKRIPKT SSWEAALRELD+AEREEARHRXXXXXXXXXXXDAGQDGEPLDL+                                WREALGLL+HIRALGITPNVKSVSA LNACGQAGQ                                                                                                    CDSKTGENWEAAAALLRRSDTLRNN+FYGRVIMACR+AG+WQKALEVLR+M RVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSL       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PDS +EPNTYSYGSVITVCATCGEVD+AVGLFDEM
Sbjct:    1 MRSPTGMWFVSPPNTGAQLGAVLHVGAVPPPRGGQVFMCSTTATTATRSNDEAVREAATTGDDAAIPELTPAAAPLAGGRMAGLSRAREAAAAARDVGAMTDGPGNNGSLLEXXXXXXXXXXXXRVRQRPRSDDQAAPSTAAAR-ARGSPAEQLLYGSTEEVEASAKKEGVSARALRRSRALVRRIKRIPKTESSWEAALRELDQAEREEARHRXXXXXXXXXXXDAGQDGEPLDLINSSSSSTGKVVRVGMVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSATLNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDSKTGENWEAAAALLRRSDTLRNNFFYGRVIMACRRAGQWQKALEVLREMPRVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSGVEPNTYSYGSVITVCATCGEVDRAVGLFDEM 599
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17814.1 vs. uniprot
Match: D7G0N2_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N2_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 1.040e-82
Identity = 377/488 (77.25%), Postives = 384/488 (78.69%), Query Frame = 0 
Query:  234 LMWREALGLLHHIRALGITPNVKSVSAALNACGQAGQWQRCLELLGEAREWGTELNEASTALRLLREMEERGIEATASNYKHALYAC--------------------------------------------------CDSKTGENWEAAAALLRRSDTLRNNYFYGRVIMACRQAGRWQKALEVLRDMSRVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLLRAMRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFDEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEKGVKPNEKTFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAAAEGTTPDAKTYE 671
            L WREALGLL+HIRALGITPNVKSVSAALNACGQAGQ                                                                                                    CDSKTGENWEAAAALLRRS+TLRNN+FYGRVIMACR+AG+WQKALEVLR+MSRVGL PDIFCYDTVISVAC+SSVGA XXXXXXXXXXXXXXXXXXXXXXXXXX SACKKAGRPRQAVSLLRAMRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFDEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEKGVKPNEKTFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAAAEGTTPDAKTYE
Sbjct:   17 LRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDSKTGENWEAAAALLRRSETLRNNFFYGRVIMACRRAGQWQKALEVLREMSRVGLAPDIFCYDTVISVACMSSVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSACKKAGRPRQAVSLLRAMRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFDEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEKGVKPNEKTFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAAAEGTTPDAKTYE 504
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17814.1 vs. uniprot
Match: A0A812RT14_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812RT14_9DINO)

HSP 1 Score: 60.8 bits (146), Expect = 4.640e-6
Identity = 42/157 (26.75%), Postives = 65/157 (41.40%), Query Frame = 0 
Query:  236 WREALGLLHHIRALGITPNVKSVSAALNACGQAGQWQRCLELLGEAREWGTELNEASTALRLLREMEERGIEATASNYKHALYACCDSKTGENWEAAAAL----LRRSDTLRNNYFYGRVIMACRQAGRWQKALEVLRDMSRVGLTPDIFCYDTVIS 388
            W+ ALG    +    + PNV + S+AL AC +  QW   +ELLG+ R WG EL+  +                       ++   C +     WE A  L    L  +   RN   Y  ++ +C +   W ++L +LR +      PD     +VIS
Sbjct:   90 WQTALGFTSQLSEQEVLPNVVTSSSALCACREGHQWLLAVELLGDLRLWGIELDVVAHG---------------------SVVGACKAA----WEQAFFLHHEPLGDARLTRNIISYSALLQSCSECSEWSQSLHILRSLKTTASRPDTVALTSVIS 221
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17814.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAX5_9PHAE7.960e-18469.83PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
D7G0N2_ECTSI1.040e-8277.25PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A812RT14_9DINO4.640e-626.75Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 194..221
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 289..391
coord: 405..553
coord: 477..670
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 484..568
e-value: 1.6E-24
score: 88.2
coord: 290..393
e-value: 3.1E-15
score: 57.9
coord: 569..684
e-value: 1.5E-28
score: 101.4
coord: 394..483
e-value: 5.3E-20
score: 73.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 174..289
e-value: 3.5E-9
score: 38.5
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 345..389
e-value: 0.0033
score: 17.5
coord: 405..466
e-value: 4.5E-9
score: 36.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 634..657
e-value: 0.017
score: 15.4
coord: 259..285
e-value: 0.29
score: 11.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 559..606
e-value: 2.8E-8
score: 33.8
coord: 488..535
e-value: 7.5E-10
score: 38.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 526..559
e-value: 8.5E-5
score: 20.5
coord: 598..632
e-value: 2.9E-5
score: 21.9
coord: 634..667
e-value: 1.3E-4
score: 19.9
coord: 561..596
e-value: 3.6E-5
score: 21.7
coord: 491..525
e-value: 1.7E-5
score: 22.7
coord: 454..481
e-value: 8.4E-5
score: 20.5
coord: 348..380
e-value: 4.5E-5
score: 21.4
coord: 419..453
e-value: 3.4E-7
score: 28.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 452..486
score: 9.536
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 344..378
score: 10.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 489..523
score: 10.983
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 595..625
score: 8.901
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 417..451
score: 11.619
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 254..288
score: 8.122
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 379..416
score: 6.993
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 559..594
score: 9.723
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 631..665
score: 10.183
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 524..558
score: 10.271

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:357156..364555 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17814.1mRNA_Ecto-sp6_S_contig87.17814.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig87 357111..364555 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig87.17814.1 ID=prot_Ecto-sp6_S_contig87.17814.1|Name=mRNA_Ecto-sp6_S_contig87.17814.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=699bp
MPSPTVMSFVSPPNTGAQLGAVLHVGAVPPPRGGQVFMCSTTATTATRSN
DEAVREAATTGDDAASPGLTPAAAPLAGGRMVGLSRAREAAAAARDVGAM
TDGPGNSGSVLEQQVVPAATTRRVRQRPRSDDQAAPSTAAAREARGSPAE
QRFYGSPKEVEASANKEGVSVRALRRSRALVRRIKRIPKTGSSWEAALRE
LDRAEREEARHRRREQDQQNNNDDAGQDGEPLDLMWREALGLLHHIRALG
ITPNVKSVSAALNACGQAGQWQRCLELLGEAREWGTELNEASTALRLLRE
MEERGIEATASNYKHALYACCDSKTGENWEAAAALLRRSDTLRNNYFYGR
VIMACRQAGRWQKALEVLRDMSRVGLTPDIFCYDTVISVACLSSVGAQWE
IARDLLREQAKTGVPCSLISYNLVLSACKKAGRPRQAVSLLRAMRGHGCS
PDVISYNTAISACVKRREWELALFVLRDMQRPDSRLEPNTYSYGSVITVC
ATCGEVDQAVGLFDEMPEAGVKVDAFTYNSVAMAYARDGRWRQAISTLSD
MSELGHVGDVVSYTAAIRACGWAGECDRALSLLREMREEKGVKPNEKTFA
AAISACGHGGRWERGLELLSEMPRSTGFLPDADCYTSAIKACGKGGQWEQ
AFTLLREAAAEGTTPDAKTYEVGITWHMLRAQGAAVSQESISRRERWV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat