prot_Ecto-sp6_S_contig87.17781.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig87.17781.1
Unique Nameprot_Ecto-sp6_S_contig87.17781.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length144
Homology
BLAST of mRNA_Ecto-sp6_S_contig87.17781.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 3.710e-94
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0
Query:    1 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIREVEKLD 143
            MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREIL+RIREVEKLD
Sbjct:    1 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 143          
BLAST of mRNA_Ecto-sp6_S_contig87.17781.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 244 bits (623), Expect = 3.400e-81
Identity = 122/143 (85.31%), Postives = 139/143 (97.20%), Query Frame = 0
Query:    1 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIREVEKLD 143
            MIRFLLLQNRQGKTRLSKW+IPL+DE+EK +IEN+VHRLVV+RDRKYTNF+EY +YK+IYRRYAGLFFT G+DVNDNELLALETVHLFVELL+SYFSNVCELDIVFNFNKVYNILDEFILSGEV+ES+K EIL+R+RE+EKL+
Sbjct:    1 MIRFLLLQNRQGKTRLSKWYIPLYDEQEKNKIENDVHRLVVSRDRKYTNFIEYQSYKIIYRRYAGLFFTLGVDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNKVYNILDEFILSGEVQESAKPEILDRVRELEKLE 143          
BLAST of mRNA_Ecto-sp6_S_contig87.17781.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA)

HSP 1 Score: 218 bits (555), Expect = 9.250e-71
Identity = 108/143 (75.52%), Postives = 128/143 (89.51%), Query Frame = 0
Query:    1 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIREVEKLD 143
            MIRF LLQNRQGKTRLSKW++    ++EK R+E E+HRLVV RDRKYT+F+E+  YKL+YRRYAGLFFT G+DVNDNELL LET+HLFVELL+ YFSNVCELDIVFNFNKVY ILDEFIL+GE++E+SK+EILERI+EVEK +
Sbjct:    4 MIRFFLLQNRQGKTRLSKWYVAPAQDREKSRLEAEIHRLVVGRDRKYTSFIEFMNYKLVYRRYAGLFFTIGIDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNKVYGILDEFILAGEIQETSKKEILERIKEVEKRE 146          
BLAST of mRNA_Ecto-sp6_S_contig87.17781.1 vs. uniprot
Match: F0W4M2_9STRA (AP-2 complex subunit sigma n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4M2_9STRA)

HSP 1 Score: 216 bits (550), Expect = 2.670e-69
Identity = 105/143 (73.43%), Postives = 131/143 (91.61%), Query Frame = 0
Query:    1 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIREVEKLD 143
            MIRF LLQNRQGKTRLSKW++P  D++EK R+ENE+HRLVV+RD K+TNF+E+ +YKLIYRRYAGLFF  G+D++ NELL+LET+HLFVELL+  FSNVCELDIVFNFNKVY++LDE+IL GEV+E+SKRE+L+RIRE+EKL+
Sbjct:   55 MIRFFLLQNRQGKTRLSKWYVPAPDDQEKFRLENEIHRLVVSRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 197          
BLAST of mRNA_Ecto-sp6_S_contig87.17781.1 vs. uniprot
Match: A0A024GMS7_9STRA (AP complex subunit sigma n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMS7_9STRA)

HSP 1 Score: 213 bits (542), Expect = 2.150e-68
Identity = 102/143 (71.33%), Postives = 131/143 (91.61%), Query Frame = 0
Query:    1 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIREVEKLD 143
            MIRF L+QNRQGKTRLSKW++P  D++EK R+E+E+HRLV++RD K+TNF+E+ +YKLIYRRYAGLFF  G+D++ NELL+LET+HLFVELL+  FSNVCELDIVFNFNKVY++LDE+IL GEV+E+SKRE+L+RIRE+EKL+
Sbjct:   33 MIRFFLMQNRQGKTRLSKWYVPAPDDQEKFRLEHEIHRLVISRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 175          
BLAST of mRNA_Ecto-sp6_S_contig87.17781.1 vs. uniprot
Match: A0A7S3L6S1_9STRA (AP complex subunit sigma n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S3L6S1_9STRA)

HSP 1 Score: 211 bits (536), Expect = 8.550e-68
Identity = 108/153 (70.59%), Postives = 128/153 (83.66%), Query Frame = 0
Query:    1 MIRFLLLQNRQGKTRLSKWWIP----------LHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIREVEKLD 143
            MIRF LLQNRQGKTRLSKW++P           + E EKVRIE E HRLV  RD+KYTNF+EY +YKLIYRRYAGLFFT  +DV DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDEF+L+GE+EE+SKREIL+R++ +EK++
Sbjct:    1 MIRFFLLQNRQGKTRLSKWYVPPPTQTQSGTTANAEAEKVRIEAECHRLVTARDKKYTNFIEYNSYKLIYRRYAGLFFTIAVDVTDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEFMLAGELEETSKREILDRVKMLEKME 153          
BLAST of mRNA_Ecto-sp6_S_contig87.17781.1 vs. uniprot
Match: A0A4D9D180_9STRA (AP complex subunit sigma n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D180_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.030e-67
Identity = 105/140 (75.00%), Postives = 126/140 (90.00%), Query Frame = 0
Query:    1 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIREVE 140
            MIRFLLLQNRQGKTRLSKW+I   +E EK R+E +VH+L+V+RDRKYTNFVEY  YKLIYRRYAGL+F+ G+DV DNEL  LE++HLFVELL+ YF NVCELDIVFNFNKVY+ILDEFIL+GE++E+SKREILERIR+++
Sbjct:    1 MIRFLLLQNRQGKTRLSKWYILPPNEAEKFRLEADVHKLIVSRDRKYTNFVEYQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEYFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQ 140          
BLAST of mRNA_Ecto-sp6_S_contig87.17781.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.100e-67
Identity = 106/150 (70.67%), Postives = 128/150 (85.33%), Query Frame = 0
Query:    1 MIRFLLLQNRQGKTRLSKWWIPLHD-------EKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIREVEKLD 143
            MIRF LLQNRQGKTRLSKW++P          E EK RIE+EVHRLV +RD+KYTNF+EY +YKLIYRRYAGLFFT  +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDE+IL+GE+EE+SK+EIL+R++ +EKL+
Sbjct:    1 MIRFFLLQNRQGKTRLSKWYVPPPSSTGGGSPEAEKARIESEVHRLVTSRDKKYTNFIEYASYKLIYRRYAGLFFTIAVDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYMILDEYILAGEIEETSKKEILDRVKVLEKLE 150          
BLAST of mRNA_Ecto-sp6_S_contig87.17781.1 vs. uniprot
Match: A0A6T8NVY6_9STRA (AP complex subunit sigma n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8NVY6_9STRA)

HSP 1 Score: 209 bits (533), Expect = 2.700e-67
Identity = 108/156 (69.23%), Postives = 127/156 (81.41%), Query Frame = 0
Query:    1 MIRFLLLQNRQGKTRLSKWWIPLHD-------------EKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIREVEKLD 143
            MIRF LLQNRQGKTRLSKW++P  +             E EK RIE EVHRLV +RD+KYTNF+EY  YKLIYRRYAGLFFT  +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDEF+L+GE+EE+SKREILER++ +EK+D
Sbjct:    1 MIRFFLLQNRQGKTRLSKWYVPPPNSGANNNSGSISGAEAEKARIEAEVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDMTDNELNYLETIHLFVELLDSYFSNVCELDIVFNFNRVYAILDEFMLAGEIEETSKREILERVKVIEKMD 156          
BLAST of mRNA_Ecto-sp6_S_contig87.17781.1 vs. uniprot
Match: A0A7S2UVB6_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVB6_9STRA)

HSP 1 Score: 209 bits (531), Expect = 3.550e-67
Identity = 103/143 (72.03%), Postives = 129/143 (90.21%), Query Frame = 0
Query:    1 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIREVEKLD 143
            MIRFLL+QNRQGKTRLSKW+IP  +++EK R+E E++RLV++RDRKYTNF+EY ++KLIYRRYAGL+F  G+DV DNEL  LET+H  VELL+SYFSNVCELDIVF+FNKVY+ILDE+IL+GEV E++K EILER+RE+EKL+
Sbjct:    1 MIRFLLMQNRQGKTRLSKWYIPSPEDQEKARMELEINRLVLSRDRKYTNFIEYHSFKLIYRRYAGLYFIMGVDVGDNELGILETIHFMVELLDSYFSNVCELDIVFHFNKVYSILDEYILAGEVMETNKNEILERVRELEKLE 143          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17781.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQX3_ECTSI3.710e-9499.30AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YZE0_9STRA3.400e-8185.31AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2CS13_9STRA9.250e-7175.52AP complex subunit sigma n=1 Tax=Dictyocha speculu... [more]
F0W4M2_9STRA2.670e-6973.43AP-2 complex subunit sigma n=1 Tax=Albugo laibachi... [more]
A0A024GMS7_9STRA2.150e-6871.33AP complex subunit sigma n=1 Tax=Albugo candida Ta... [more]
A0A7S3L6S1_9STRA8.550e-6870.59AP complex subunit sigma n=2 Tax=Bacillariophycida... [more]
A0A4D9D180_9STRA1.030e-6775.00AP complex subunit sigma n=1 Tax=Nannochloropsis s... [more]
A0A7S0FJC4_9STRA1.100e-6770.67AP complex subunit sigma n=1 Tax=Minutocellus poly... [more]
A0A6T8NVY6_9STRA2.700e-6769.23AP complex subunit sigma n=1 Tax=Proboscia inermis... [more]
A0A7S2UVB6_9STRA3.550e-6772.03AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016635Adaptor protein complex, sigma subunitPIRSFPIRSF015588AP_complex_sigmacoord: 1..143
e-value: 8.4E-59
score: 195.7
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 2..143
NoneNo IPR availableGENE3D3.30.450.60coord: 1..143
e-value: 1.3E-54
score: 186.0
NoneNo IPR availablePANTHERPTHR11753:SF44AP-2 COMPLEX SUBUNIT SIGMAcoord: 2..143
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..142
e-value: 1.3E-49
score: 167.8
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:71354..74631 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17781.1mRNA_Ecto-sp6_S_contig87.17781.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig87 71087..74719 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig87.17781.1 ID=prot_Ecto-sp6_S_contig87.17781.1|Name=mRNA_Ecto-sp6_S_contig87.17781.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=144bp
MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNF
VEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVC
ELDIVFNFNKVYNILDEFILSGEVEESSKREILERIREVEKLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
IPR011012Longin-like_dom_sf