prot_Ecto-sp6_S_contig83.17534.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig83.17534.1
Unique Nameprot_Ecto-sp6_S_contig83.17534.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length183
Homology
BLAST of mRNA_Ecto-sp6_S_contig83.17534.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 3.930e-68
Identity = 113/120 (94.17%), Postives = 114/120 (95.00%), Query Frame = 0
Query:   63 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNHREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA 182
            MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRK +K     REFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA
Sbjct:    1 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKK-----REFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA 115          
BLAST of mRNA_Ecto-sp6_S_contig83.17534.1 vs. uniprot
Match: W7TQD2_9STRA (50s ribosomal protein l20 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQD2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 6.700e-40
Identity = 90/160 (56.25%), Postives = 115/160 (71.88%), Query Frame = 0
Query:   18 SLVRPGCSSVARHRGGGLGAAVGGGSSSRQGPCDALGQQQQQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNHREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 177
            SLV    ++VA  R G    AV GG +S   PC   G   Q  R +A  NHRHKKI+K+AKGYRGR+ + F+IA+QRVEKALQ AYRDRK +K     REFR LWI+RI A V+Q+GM YS F+   R+A++ LNRKVLA++AV+EPYSF+AVVETV+++
Sbjct:    8 SLVLRRAATVATIRAGSQPDAVYGGIASI--PCLLKGPFLQPSRSLA--NHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKK-----REFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157          
BLAST of mRNA_Ecto-sp6_S_contig83.17534.1 vs. uniprot
Match: A0A7S3GYL0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYL0_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.210e-37
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 0
Query:   58 QQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNHREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 175
            Q  RGMA  N RHKK++KLAKGYRGR+   F +AIQRV KA Q AYRDRK +K     REFR LWI+RINA  R +G+PYS+ +NK  K D+ LNRKVL+E+A+TEP SF++VVE  K
Sbjct:   40 QAVRGMA--NQRHKKMIKLAKGYRGRANRCFTVAIQRVTKARQYAYRDRKVKK-----REFRALWIQRINAASRMYGLPYSILINKMVKTDIALNRKVLSELAITEPLSFKSVVEVAK 150          
BLAST of mRNA_Ecto-sp6_S_contig83.17534.1 vs. uniprot
Match: A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT)

HSP 1 Score: 133 bits (335), Expect = 4.670e-37
Identity = 63/107 (58.88%), Postives = 89/107 (83.18%), Query Frame = 0
Query:   69 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNHREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 175
            RHKKILK+AKGYRGRSK+VF++AIQRVEKALQ AYRDR+ +K     R FR LWI+RINAG R+HGM YS F++  +KA++E++RK+L+++A+  P +F+++VE ++
Sbjct:   13 RHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKK-----RNFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114          
BLAST of mRNA_Ecto-sp6_S_contig83.17534.1 vs. uniprot
Match: A0A4P5SLS5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4P5SLS5_9PROT)

HSP 1 Score: 132 bits (333), Expect = 8.830e-37
Identity = 68/107 (63.55%), Postives = 87/107 (81.31%), Query Frame = 0
Query:   69 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNHREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 175
            RHKKILKLAKGYRGR+K+ F++AI++VEKAL+ AYRDRKARK     R+FR LWI+RINAGVR+HGM YS F+N  + A ++L+RKVLA++AV EP +F  +VE  K
Sbjct:   13 RHKKILKLAKGYRGRAKNCFRVAIEKVEKALRYAYRDRKARK-----RDFRSLWIQRINAGVREHGMIYSKFINGLKLAKIDLDRKVLADLAVREPETFAKIVEKAK 114          
BLAST of mRNA_Ecto-sp6_S_contig83.17534.1 vs. uniprot
Match: A0A7S2W484_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W484_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.250e-36
Identity = 74/124 (59.68%), Postives = 94/124 (75.81%), Query Frame = 0
Query:   59 QCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNHREFRRLWIERINAGVRQHGMPYSVFVNKAR-KADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPK 181
            Q R MA+   +HK +LK+AKGYRGRSK+ F+ AI+RVEKALQ AYRDRK +K     R FR+LWI+R+NAGVRQHGM YS F+  A   AD+ LNR++LAE++  EP+SF+AVV+ VK K  PK
Sbjct:  111 QSRTMASK--KHKAVLKMAKGYRGRSKNTFRAAIRRVEKALQYAYRDRKVKK-----RNFRKLWIQRLNAGVRQHGMSYSRFIRAAPLDADIVLNRRMLAELSTNEPFSFKAVVDVVKMKQQPK 227          
BLAST of mRNA_Ecto-sp6_S_contig83.17534.1 vs. uniprot
Match: K2EJ18_9BACT (50S ribosomal protein L20 n=3 Tax=Bacteria TaxID=2 RepID=K2EJ18_9BACT)

HSP 1 Score: 132 bits (332), Expect = 1.250e-36
Identity = 67/103 (65.05%), Postives = 84/103 (81.55%), Query Frame = 0
Query:   69 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNHREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVV 171
            RHKK+LKLAKGYRGRSKS ++IA+QRVEKALQ AYRDR+ RK     R+FR LWI+RINAG R+HGM YS FVN   +A +E++RKVLA++AV EP +F+ +V
Sbjct:   13 RHKKVLKLAKGYRGRSKSCYRIALQRVEKALQYAYRDRRTRK-----RDFRALWIQRINAGAREHGMTYSKFVNGLTRAGIEIDRKVLADLAVHEPIAFKEIV 110          
BLAST of mRNA_Ecto-sp6_S_contig83.17534.1 vs. uniprot
Match: A0A7X2KDB2_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KDB2_9PROT)

HSP 1 Score: 132 bits (332), Expect = 1.250e-36
Identity = 68/108 (62.96%), Postives = 87/108 (80.56%), Query Frame = 0
Query:   69 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNHREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKA 176
            RHKK+LKLAKGYRGR+ + F+IA+++VEK LQ AYRDR+A+K     R FR+LWI RINAGVRQHGM YS F+N  + A +EL+RKVLA+MA  EP SF+A+V+T +A
Sbjct:   13 RHKKVLKLAKGYRGRNSTNFRIALEKVEKGLQYAYRDRRAKK-----RTFRQLWITRINAGVRQHGMTYSQFMNGMKLAGIELDRKVLADMAALEPESFKALVDTARA 115          
BLAST of mRNA_Ecto-sp6_S_contig83.17534.1 vs. uniprot
Match: A0A1M3GWJ7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium 41-28 TaxID=1895706 RepID=A0A1M3GWJ7_9PROT)

HSP 1 Score: 131 bits (330), Expect = 2.510e-36
Identity = 66/104 (63.46%), Postives = 86/104 (82.69%), Query Frame = 0
Query:   69 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNHREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVE 172
            RHKK+LKLAKGYRGRSK+ F+IAIQRVEKALQ AYRDR+ RK     R+FR LWI+RINAG R+HG+ YS F+N   KA ++++RKVLA++AV EP +F+++V+
Sbjct:   13 RHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRK-----RDFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111          
BLAST of mRNA_Ecto-sp6_S_contig83.17534.1 vs. uniprot
Match: A0A2M7T1Y8_9PROT (50S ribosomal protein L20 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2M7T1Y8_9PROT)

HSP 1 Score: 130 bits (328), Expect = 5.520e-36
Identity = 68/115 (59.13%), Postives = 90/115 (78.26%), Query Frame = 0
Query:   61 RGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNHREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 175
            +G  + + RHKKI+KLAKGYRGRSK+ F+IA+QRVEKALQ AYRDR+ +K     REFR LWI+RINA VR++GM YS F+N   KA VEL+RKV+A+MA+  P +F+ +V+T +
Sbjct:    5 KGGVSAHKRHKKIIKLAKGYRGRSKNCFRIALQRVEKALQYAYRDRRNKK-----REFRALWIQRINAAVREYGMKYSTFINGLNKAGVELDRKVMADMAMNTPKAFKDLVKTAE 114          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17534.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G284_ECTSI3.930e-6894.1750S ribosomal protein L20 n=1 Tax=Ectocarpus silic... [more]
W7TQD2_9STRA6.700e-4056.2550s ribosomal protein l20 n=1 Tax=Nannochloropsis ... [more]
A0A7S3GYL0_9STRA2.210e-3761.02Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2S6SQA5_9PROT4.670e-3758.8850S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A4P5SLS5_9PROT8.830e-3763.5550S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A7S2W484_9STRA1.250e-3659.68Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
K2EJ18_9BACT1.250e-3665.0550S ribosomal protein L20 n=3 Tax=Bacteria TaxID=2... [more]
A0A7X2KDB2_9PROT1.250e-3662.9650S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A1M3GWJ7_9PROT2.510e-3663.4650S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2M7T1Y8_9PROT5.520e-3659.1350S ribosomal protein L20 n=2 Tax=Alphaproteobacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 68..97
score: 43.54
coord: 136..162
score: 41.64
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 64..169
e-value: 2.5E-38
score: 130.5
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 64..175
e-value: 4.8E-39
score: 131.1
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 65..177
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 57..176
score: 23.459
NoneNo IPR availableGENE3D1.10.720.90coord: 60..111
e-value: 3.5E-17
score: 64.2
NoneNo IPR availablePRODOMPD002389coord: 76..133
e-value: 3.0E-14
score: 189.0
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20coord: 116..178
e-value: 7.6E-27
score: 94.6
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 66..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:475060..477506 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17534.1mRNA_Ecto-sp6_S_contig83.17534.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig83 474990..478407 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig83.17534.1 ID=prot_Ecto-sp6_S_contig83.17534.1|Name=mRNA_Ecto-sp6_S_contig83.17534.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=183bp
MSWSAVLGKVRPQALWSSLVRPGCSSVARHRGGGLGAAVGGGSSSRQGPC
DALGQQQQQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQ
QAYRDRKARKGLLNHREFRRLWIERINAGVRQHGMPYSVFVNKARKADVE
LNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
IPR035566Ribosomal_protein_L20_C