prot_Ecto-sp6_S_contig82.17438.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig82.17438.1
Unique Nameprot_Ecto-sp6_S_contig82.17438.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length88
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17438.1 vs. uniprot
Match: A0A835YTG5_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.220e-12
Identity = 42/84 (50.00%), Postives = 49/84 (58.33%), Query Frame = 0 
Query:    5 GSLLASASGDGAVRLWLLPPSDQLLEAEGGRRRDSASSPTLSSEQQPRSVLRGHGDGLGSSAPDVYSVGFHPAEAHVVTAGHDR 88
            GS LASASGDG VRLW LP +  L + + G   DS S P  +S     + L GH         DVYSV FHP ++HVVT GHDR
Sbjct:  277 GSRLASASGDGTVRLWALPSNVALAQGDLGGSDDSDSQPIGTS----LATLTGH-------QSDVYSVAFHPDQSHVVTGGHDR 349
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BLAST of mRNA_Ecto-sp6_S_contig82.17438.1 vs. uniprot
Match: A0A6H5K2X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2X5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 9.400e-9
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0 
Query:    1 ANRQGSLLASASGDGAVRLWLLPPSDQLLE 30
            ANRQGSLLASASGDGAVRLW LPPSDQLLE
Sbjct:  175 ANRQGSLLASASGDGAVRLWSLPPSDQLLE 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17438.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YTG5_9STRA4.220e-1250.00WD40 repeat-containing protein SMU1 n=1 Tax=Tribon... [more]
A0A6H5K2X5_9PHAE9.400e-996.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..88
e-value: 1.3E-8
score: 36.6
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..30
score: 9.177
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..20
score: 9.472
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 4..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:447126..448391 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17438.1mRNA_Ecto-sp6_S_contig82.17438.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig82 447124..448391 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig82.17438.1 ID=prot_Ecto-sp6_S_contig82.17438.1|Name=mRNA_Ecto-sp6_S_contig82.17438.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=88bp
ANRQGSLLASASGDGAVRLWLLPPSDQLLEAEGGRRRDSASSPTLSSEQQ
PRSVLRGHGDGLGSSAPDVYSVGFHPAEAHVVTAGHDR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR036322WD40_repeat_dom_sf