prot_Ecto-sp6_S_contig110.1471.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig110.1471.1
Unique Nameprot_Ecto-sp6_S_contig110.1471.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length406
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig110.1471.1 vs. uniprot
Match: D7G4J8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J8_ECTSI)

HSP 1 Score: 537 bits (1384), Expect = 5.020e-186
Identity = 306/369 (82.93%), Postives = 309/369 (83.74%), Query Frame = 0 
Query:   38 MSTACLSATESGYFSFDQQIHTSHVPDELDAEGGINIDYQITYGWRSSCTWVRAEYTESNGEEKAEEDSGCFGLAEEELLDETEVVLAGGRSMDADTGLAVALGHAVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVIDVTTMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASVSSAPKAXXXXXXXXXXXXGVVFGGAHPTATAAAMSGLGAGGSMLPGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASPAGSESENGSVLSSWTGG 406
            MSTACLSATESGYFSFDQQIHTSHVPDELDAEGGI+IDYQITYGWRSSCTWVRAEYTESNGEEKA+EDSGCFGLAE+EL DETE VLAGGRSMDADTGLAVALGHAVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVIDVT MVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDAS SSAPKA            GVVFGGAHP ATAAAMSGLG                                          XXXXXXXXXX SASPAGSESENGSVLSSWTGG
Sbjct:    1 MSTACLSATESGYFSFDQQIHTSHVPDELDAEGGIDIDYQITYGWRSSCTWVRAEYTESNGEEKAKEDSGCFGLAEKELEDETEAVLAGGRSMDADTGLAVALGHAVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVIDVTIMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHPPATAAAMSGLG------------------------------------------XXXXXXXXXXESASPAGSESENGSVLSSWTGG 327
[Close]
BLAST of mRNA_Ecto-sp6_S_contig110.1471.1 vs. uniprot
Match: A0A6H5JHQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ9_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.820e-47
Identity = 101/133 (75.94%), Postives = 101/133 (75.94%), Query Frame = 0 
Query:  224 VIDVTTMVVVGMLACQDEEVDAAIATPQ----------------YTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASVSSAPKAXXXXXXXXXXXXGVVFGGAHPTATAAAMSGLGAGGSMLPG 340
            VIDVT MVVVGMLACQDEEVDAAIATPQ                YTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDAS SSAPKA            GVVFGGAHPTATAAAMSGLG GG MLPG
Sbjct:   12 VIDVTIMVVVGMLACQDEEVDAAIATPQIDTPRAVRLNSYLVFQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHPTATAAAMSGLGPGGGMLPG 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1471.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J8_ECTSI5.020e-18682.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHQ9_9PHAE1.820e-4775.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 199..217
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 136..161
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 239..406
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 173..198
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 47..135
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 218..238
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 162..172
NoneNo IPR availableTMHMMTMhelixcoord: 218..237
NoneNo IPR availableTMHMMTMhelixcoord: 141..163
NoneNo IPR availableTMHMMTMhelixcoord: 176..198
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig110contigEcto-sp6_S_contig110:165222..175107 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig110.1471.1mRNA_Ecto-sp6_S_contig110.1471.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig110 165002..175107 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig110.1471.1 ID=prot_Ecto-sp6_S_contig110.1471.1|Name=mRNA_Ecto-sp6_S_contig110.1471.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=406bp
MIFRRPIRDVVEERHGSRTCGVHVFLFYILALGAVLAMSTACLSATESGY
FSFDQQIHTSHVPDELDAEGGINIDYQITYGWRSSCTWVRAEYTESNGEE
KAEEDSGCFGLAEEELLDETEVVLAGGRSMDADTGLAVALGHAVAAAVAS
IHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAI
KGSLDVNMSTSAGLRPSWAYVLTVIDVTTMVVVGMLACQDEEVDAAIATP
QYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASVSSAPKA
TVGSGNMMTGGSGVVFGGAHPTATAAAMSGLGAGGSMLPGGSGGGGGTLR
MSAAAASASAHALGRFAAAAVAAGGGGGGASAGAESASPAGSESENGSVL
SSWTGG
back to top