prot_Ecto-sp6_S_contig110.1469.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig110.1469.1
Unique Nameprot_Ecto-sp6_S_contig110.1469.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length1237
Homology
BLAST of mRNA_Ecto-sp6_S_contig110.1469.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE)

HSP 1 Score: 1392 bits (3602), Expect = 0.000e+0
Identity = 984/1161 (84.75%), Postives = 1003/1161 (86.39%), Query Frame = 0
Query:   63 ATPVAVEHRSVGGVERTAAAASAAPAAASTGALVPATPLPPVLASAGGGDGRPSKMPRRAANVGSAGDGATASAAAVPGPAVAAGLSNQDARRTGRGKDCESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------AASGSLGDAAGRGGGPAGTERHRPSSSGRSDHGPGASATPMPYAGRARRQPAXXXXXXXXXXXXXXXGGANDSGLSAGLPXXXXXXXXXXXDNADEGAGRCGVRVPSRARPWREVAAGDGGXXXXXXXXXXXXX--AGTNAVVVRDEDAXXXXXXXDAGEGGDKXXXXXXXXXEEGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYQERLQETEPERALVSQVRRIADDAXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXLGGVAREVVGFGNVPPGFMQGLHGQQNAARFRLDVAVPQREIPPTVARWYKYMGLALFACLCVSWQYPGTTGEGLWHPTLAFWRKNNEPAVTVTTSASGHQCVAGGGAGDAGSGDCSVANDGAEKGEFAGVSSEEGGGGAWSWLFSMEMNVQEYIAHNRWNALRSFHPSTSPWSGPLFLYLEDPVLLTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------SPPSGWLSTLAWPVTYSLRKVGVLSSPANTSEDSSGXXXXXXXXXXXXXXXXXXXXXXXXVSDGDRHECGHASVDGGGGVGEDD--EVCWREGKKAPEEVSSPAERFSAEXXXXXXXXXXXXXXGA-----EGAAGEPQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRSTKGAEGDSAVLLSSDDLVSLDFSLDLAIYAVFTLTITTATLWRFTLKTFKRDQPRSRTLKLLLTAAASHLVREVVMIKVAFPIIEHLLFHYVLQWRRRYLLTWLALSIRVLIMRLLACLRVALLMATPFVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVGDVPRRHVGGRAARRWVRAMREARAGAARANVPMANLAAIPNLPPLPPHRAGAAA 1189
            AT  A EHRSVGGV+RTA AASAAP AASTGALVPATPLPPVLAS GGGDGRPSKMPRRAANVG AGDGATASAAAVP PA AAG  NQDARRTGRGKDCE+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              AAS S GDAAGRGGGP GTERHRPSS GRSDHGP AS TPMPYAG AR+QPA                GAND+GLSA   XXXXXXXX   DN  EGAGR GVRVPSRARPW EVAAG+GGXXXXXXXXXXXXX  AGTNAVVVRDEDA       DA EGG +         EEGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGN+RANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAY+ERLQETEPERALVSQVRRIADDAXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXLGG+AREVVGFGNVPPGFMQGLHGQQNAARFRLDVAVPQREIPPTVARWYKYMGLALFACLCVSWQYPGTTGEGLWHP+LAFWRKNNEPAVTVTTSAS HQCVA GGAG A SGDCSVA+DGAEKGEFAG SSE   GG+W W FSMEMNVQEYIAHNRWNALRSFHPSTS WSGPLFLYLEDP+LLTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 SPPSGWLSTLAWPVTYSLRKVGVLSSPANTSEDSSG     XXXXXXXXXXXXXXXXXXX    DRHECGHAS             EVCWREGK+AP EVSSP E +SAEXXXXXXXXXXXXXX       EGAAGE QQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRSTKGA GDSA     DDLVSLDFSLDLAIYAVFTL ITTATLWRFT K+FKRD+PRSR+LKLLLTAAA HLVREV MIKVAFPIIEHLLFHYVLQWRRRYLL WLALSIRV I+RLLACLRVALLMATP VPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVGD PRRHVGGRAARRWVRAMREARAGAARANVPMANLAAIPN P LPPHRAGAAA
Sbjct:   63 ATAAAAEHRSVGGVDRTAVAASAAPVAASTGALVPATPLPPVLASTGGGDGRPSKMPRRAANVGGAGDGATASAAAVPAPADAAGHDNQDARRTGRGKDCEADTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAASDSFGDAAGRGGGPVGTERHRPSSPGRSDHGPAASVTPMPYAGIARKQPAGVGGGGNSRQSARHHCGANDAGLSAXXXXXXXXXXXGGVDNTAEGAGRSGVRVPSRARPWGEVAAGNGGXXXXXXXXXXXXXXXAGTNAVVVRDEDAATAAAAADAREGGGREAGAGLSSGEEGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNVRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYRERLQETEPERALVSQVRRIADDAXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXLGGMAREVVGFGNVPPGFMQGLHGQQNAARFRLDVAVPQREIPPTVARWYKYMGLALFACLCVSWQYPGTTGEGLWHPSLAFWRKNNEPAVTVTTSASSHQCVAEGGAGGAVSGDCSVASDGAEKGEFAGGSSEGNSGGSWGWPFSMEMNVQEYIAHNRWNALRSFHPSTSAWSGPLFLYLEDPILLTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASKKGPRVGRGGSSGSASPPSGWLSTLAWPVTYSLRKVGVLSSPANTSEDSSGNDHGAXXXXXXXXXXXXXXXXXXXXXXDDRHECGHASFGXXXXXXXXXXXEVCWREGKEAPAEVSSPVESYSAEXXXXXXXXXXXXXXXXXXXXXEGAAGESQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRSTKGAGGDSA-----DDLVSLDFSLDLAIYAVFTLAITTATLWRFTWKSFKRDRPRSRSLKLLLTAAAFHLVREVAMIKVAFPIIEHLLFHYVLQWRRRYLLAWLALSIRVFIIRLLACLRVALLMATPLVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVGDGPRRHVGGRAARRWVRAMREARAGAARANVPMANLAAIPNFPRLPPHRAGAAA 1218          
BLAST of mRNA_Ecto-sp6_S_contig110.1469.1 vs. uniprot
Match: D7G4J4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J4_ECTSI)

HSP 1 Score: 1212 bits (3135), Expect = 0.000e+0
Identity = 840/984 (85.37%), Postives = 847/984 (86.08%), Query Frame = 0
Query:  234 AASGSLGDAAGRGGGPAGTERHRPSSSGRSDHGPGASATPMPYAGRARRQPAXXXXXXXXXXXXXXXGGANDSGLSAGLPXXXXXXXXXXXDNADEGAGRCGVRVPSRARPWREVAAGDGGXXXXXXXXXXXXXAGTNAVVVRDEDAXXXXXXX-DAGEGGDKXXXXXXXXXEEGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYQERLQETEPERALVSQVRRIADDAXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXLGGVAREVVGFGNVPPGFMQGLHGQQNAARFRLDVAVPQREIPPTVARWYKYMGLALFACLCVSWQYPGTTGEGLWHPTLAFWRKNNEPAVTVTTSASGHQCVAGGGAGDAGSGDCSVANDGAEKGEFAGVSSEEGGGGAWSWLFSMEMNVQEYIAHNRWNALRSFHPSTSPWSGPLFLYLEDPVLLTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPPSGWLSTLAWPVTYSLRKVGVLSSPANTSEDSSGXXXXXXXXXXXXXXXXXXXXXXXXVSDGDRHECGHASVDGGGGV--GEDDEVCWREGKKAPEEVSSPAERFSAEXXXXXXXXXXXXXXGAEGAAGEPQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRSTKGAEGDSAVLLSSDDLVSLDFSLDLAIYAVFTLTITTATLWRFTLKTFKRDQPRSRTLKLLLTAAASHLVREVVMIKVAFPIIEHLLFHYVLQWRRRYLLTWLALSIRVLIMRLLACLRVALLMATPFVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVGDVPRRHVGGRAARRWVRAMREARAGAARANVPMANLAAIPNLPPLPPHRAGAAAXXXXXXXXXXXXXXXXXXXAVDAGD 1214
            A SG  GDAAGRGG PAGTERHRPSS GRSDHGPGASATPMPYAGRARRQPA XXXXXXXXXXXXXXGGAND+GLSAGLP                                    AG  G XXXXXXXXXXX AGTNAVVVRDEDAXXXXXXX DAGEGGD+ XXXXXXXXEEGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAY+ERLQETEPERALVSQVRRIADDAXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXLGGVAREVVGFGNVPPGFMQGLHGQQNAARFR                                              +LAFWRKNNEPAVTVTTSASGHQCVAGGGAGDAGSGDCSVANDGAEKGEFA VSSEEGGGGAW WLFSMEMNVQEYIAHNRWNALRSFHPSTSPWSGPLFLYLEDPVLLTPSXXXXXXXXXXXXXXXXXX                  SPPSGWLSTLAWPVTYSLRK+GVLSSPANTSEDSSGXXXXXXXXXXXXXXXXXXXXXXXXVSDGDRHECGHASVDG      GED+EVCWREGKKAPEEVSSPAERFSAE XXXXXXXXXXXXXGAEGAAGEPQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRSTKGAEGDSA     DDLVSLDFSLDLAIYAVFTL I T TLWRFT KTFKRDQPRSRTLKLLLTAAASHLVREVVMIKVAFPIIEHLLFHYVLQWRRRYLLTWLALSIRV I+RLLACLRVALLMATPFVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVGD PRRHVGGRAARRWVRAMREARAGAARANVPMANLAAIPN PPLPPHRAGAAAXXXXXXXXXXXXXXXX   A DAGD
Sbjct:   30 APSGPFGDAAGRGG-PAGTERHRPSSPGRSDHGPGASATPMPYAGRARRQPAGXXXXXXXXXXXXXXGGANDAGLSAGLPR-----------------------------------AGAAGGXXXXXXXXXXXNAGTNAVVVRDEDAXXXXXXXXDAGEGGDRVXXXXXXXXEEGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYRERLQETEPERALVSQVRRIADDAXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXLGGVAREVVGFGNVPPGFMQGLHGQQNAARFR----------------------------------------------SLAFWRKNNEPAVTVTTSASGHQCVAGGGAGDAGSGDCSVANDGAEKGEFAEVSSEEGGGGAWCWLFSMEMNVQEYIAHNRWNALRSFHPSTSPWSGPLFLYLEDPVLLTPSXXXXXXXXXXXXXXXXXXSKKGPRVGGDGSSDSA--SPPSGWLSTLAWPVTYSLRKIGVLSSPANTSEDSSGXXXXXXXXXXXXXXXXXXXXXXXXVSDGDRHECGHASVDGXXXXCCGEDNEVCWREGKKAPEEVSSPAERFSAESXXXXXXXXXXXXXGAEGAAGEPQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRSTKGAEGDSA-----DDLVSLDFSLDLAIYAVFTLAIATVTLWRFTWKTFKRDQPRSRTLKLLLTAAASHLVREVVMIKVAFPIIEHLLFHYVLQWRRRYLLTWLALSIRVFIIRLLACLRVALLMATPFVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVGDGPRRHVGGRAARRWVRAMREARAGAARANVPMANLAAIPNFPPLPPHRAGAAAXXXXXXXXXXXXXXXXPAAAGDAGD 924          
BLAST of mRNA_Ecto-sp6_S_contig110.1469.1 vs. uniprot
Match: A0A836CBF7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.500e-6
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 0
Query:  428 CNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRI---SCPAGCQRMIPLVLPEVTTMVQKLL 499
            C IC E+L RPVTL CGHTACE C A++L     +  +     A  +   +CPAGC   + L LP V+ ++ K++
Sbjct:  291 CPICLELLYRPVTLPCGHTACELCFARFLTPFTPSTRRRAGASARALGDPACPAGCSTPLALALPAVSCVLAKVI 365          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1469.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAA6_9PHAE0.000e+084.75RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G4J4_ECTSI0.000e+085.37RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CBF7_9STRA6.500e-641.33RING-type domain-containing protein n=1 Tax=Tribon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 417..529
e-value: 1.2E-13
score: 53.0
NoneNo IPR availablePFAMPF15227zf-C3HC4_4coord: 428..462
e-value: 1.6E-7
score: 31.3
NoneNo IPR availablePANTHERPTHR23202WASP INTERACTING PROTEIN-RELATEDcoord: 344..1235
NoneNo IPR availablePANTHERPTHR23202:SF27VERPROLIN 1, ISOFORM Gcoord: 344..1235
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 968..998
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 943..948
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 1074..1096
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1020..1030
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 999..1019
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1055..1073
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1097..1237
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 1031..1054
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 949..967
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 925..942
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..924
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 424..486
NoneNo IPR availableTMHMMTMhelixcoord: 1076..1098
NoneNo IPR availableTMHMMTMhelixcoord: 1113..1135
NoneNo IPR availableTMHMMTMhelixcoord: 1000..1019
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 428..477
score: 10.188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig110contigEcto-sp6_S_contig110:132008..141105 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig110.1469.1mRNA_Ecto-sp6_S_contig110.1469.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig110 132008..141105 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig110.1469.1 ID=prot_Ecto-sp6_S_contig110.1469.1|Name=mRNA_Ecto-sp6_S_contig110.1469.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1237bp
MEENDRGAGAGPAPTPPHQPPLTSLSLPSPGPQDSGGSGGSNGSNGGGDT
DGAGRAKRKRLAATPVAVEHRSVGGVERTAAAASAAPAAASTGALVPATP
LPPVLASAGGGDGRPSKMPRRAANVGSAGDGATASAAAVPGPAVAAGLSN
QDARRTGRGKDCESGGGGGGRHEQREGGEQQQQQPQQQQQQQRSNDSQEG
RPAKMPRRNNNGGGTTSSAGGSDAAAPAASAAPAASGSLGDAAGRGGGPA
GTERHRPSSSGRSDHGPGASATPMPYAGRARRQPAGGGGGGSSRQSARHH
GGANDSGLSAGLPRAEPAAGPGGGDNADEGAGRCGVRVPSRARPWREVAA
GDGGGGGGSGGDGSDGNAGTNAVVVRDEDAAAAAAATDAGEGGDKVAAAG
SSSGEEGGEVGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACES
CMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLT
RGFPSAYQERLQETEPERALVSQVRRIADDAAAESRRRRRRPHHHGHGGI
GGAVGGGGAGGGLGGVAREVVGFGNVPPGFMQGLHGQQNAARFRLDVAVP
QREIPPTVARWYKYMGLALFACLCVSWQYPGTTGEGLWHPTLAFWRKNNE
PAVTVTTSASGHQCVAGGGAGDAGSGDCSVANDGAEKGEFAGVSSEEGGG
GAWSWLFSMEMNVQEYIAHNRWNALRSFHPSTSPWSGPLFLYLEDPVLLT
PSSSSSSSSSGAQATSSSSFVALKKGSRVGGGGSSGSASPPSGWLSTLAW
PVTYSLRKVGVLSSPANTSEDSSGNDDGASVAAAGEAAGGNGSGGGGGVS
DGDRHECGHASVDGGGGVGEDDEVCWREGKKAPEEVSSPAERFSAESYSV
ESSSAEAGSSGAEGAAGEPQQQRRIFLEFFGPVVGVFAALGLPAWLSELL
TVVAAQLCPLLAAMPLLRLSPRSTKGAEGDSAVLLSSDDLVSLDFSLDLA
IYAVFTLTITTATLWRFTLKTFKRDQPRSRTLKLLLTAAASHLVREVVMI
KVAFPIIEHLLFHYVLQWRRRYLLTWLALSIRVLIMRLLACLRVALLMAT
PFVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVGDVPRRHVGGRAARRW
VRAMREARAGAARANVPMANLAAIPNLPPLPPHRAGAAAGAAAAGADAGA
DAAAPPAAAVDAGDGDGRANGNGNGNGNPRGGGADVG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING