prot_Ecto-sp6_S_contig11.1268.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig11.1268.1
Unique Nameprot_Ecto-sp6_S_contig11.1268.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length550
Homology
BLAST of mRNA_Ecto-sp6_S_contig11.1268.1 vs. uniprot
Match: D8LAW6_ECTSI (TNFR-Cys domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW6_ECTSI)

HSP 1 Score: 816 bits (2109), Expect = 7.280e-295
Identity = 447/547 (81.72%), Postives = 452/547 (82.63%), Query Frame = 0
Query:   26 VDRGILAITFSEAMSNATDDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDSKDAGLTLAVQIHPTDLDEMKAAYVGHNSSFTWLTLRGDSFVALDDRDGNEPVYGTQVVGHQGASVSELVEDTTRRPTLDRFTLGWTERKLVLFFSEGVDALSTLHPSALSLSLPSNSTWLSPSNASSLLCSAVEFGRRQGSSNSASRREIVLHLDEPCAVEAAVTTYNATNGTSPQDEANTTTVEAFVGGYPSDWSMLVAAGVLLEGDDAGGAAIRSATNNNVSLILNATSSFVTDLSAAANPLVAVVDLEESFPDCQPCGNGTYRSEPCTEVYDAVCATCAETCAGGDHFVLSPCTAETDLDCHR-----------------------CTPCAFGTREIGEXXXXXXXXXXXXXECEDAEYESRECRTSGEXXXXXXXXXXXXXXXXXXXXXXXRSVRQWQTENCCETAMGEKIPCSDVALENLRVSAATGRWQWGRGQPAGGGDRARDGVTPRDRLIEVEFRAGAKTVFDDPRYVGQEGPTGAGSTGEL 549
            +DRG LAITFSEAMSNATDDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDSKDAGLTLAV+IHPTDLDEMKAAYVGHNSSFTWLTLRGDSFVALDDRDGNEPVYGTQVVGHQGASV ELVEDTT                                           STWLSPSNASSLLCS+ E GRRQGSSNSASRREIVLHLDEPCAVEAAVTTYNATNGTSPQDEANTTT EAFVGGYPSDWSMLVAAGVLLE        IRSATNNNVSL+LNATSSFVTDLSAAANPLVAVVDLEESFPDCQPCGNGTYRSEPCTEVYDAVCATCAETCAGGDHFVLSPCTAET LDCH                        CTPCAFGTREIGE             ECEDAEYESRECRTSGEXXXXXXXXXXXXXXXXXXXXXXXRSVRQWQTENCCETA+GEKIPC DVALENLRVSAATGRWQWGRGQPAGGGDRARDGVTPRDRLIEVEFRAGAKTVFDDPRYVGQEGPTGAGSTGEL
Sbjct:    1 MDRGTLAITFSEAMSNATDDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDSKDAGLTLAVRIHPTDLDEMKAAYVGHNSSFTWLTLRGDSFVALDDRDGNEPVYGTQVVGHQGASVLELVEDTT-------------------------------------------STWLSPSNASSLLCSSAELGRRQGSSNSASRREIVLHLDEPCAVEAAVTTYNATNGTSPQDEANTTTAEAFVGGYPSDWSMLVAAGVLLEDXXXXXXXIRSATNNNVSLVLNATSSFVTDLSAAANPLVAVVDLEESFPDCQPCGNGTYRSEPCTEVYDAVCATCAETCAGGDHFVLSPCTAETGLDCHPILPGFLRPDTRPPHDPRHATMQGCTPCAFGTREIGECQQASDRVCEACTECEDAEYESRECRTSGEXXXXXXXXXXXXXXXXXXXXXXXRSVRQWQTENCCETAVGEKIPCPDVALENLRVSAATGRWQWGRGQPAGGGDRARDGVTPRDRLIEVEFRAGAKTVFDDPRYVGQEGPTGAGSTGEL 504          
BLAST of mRNA_Ecto-sp6_S_contig11.1268.1 vs. uniprot
Match: A0A1X7V1F8_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V1F8_AMPQE)

HSP 1 Score: 62.0 bits (149), Expect = 3.100e-6
Identity = 56/183 (30.60%), Postives = 97/183 (53.01%), Query Frame = 0
Query:   14 SAGPELETFSLDVDRGILAITFSEAMSNATDDVDWTGVSLRTHVNGLEGSGVTLWNTQGE-PGWGETDSKDAGLTLAVQIHPTDLDEMKA-AYVGHNSSFTWLTLRGDSFVALDDRDGNEPVYGTQVVGH--QGASVSELVEDTTRRPTLDRFTLGWTERKLVLFFSEGVDALSTLHPSALSL 192
            +  P L++FSLD++ GI+++TFSE + + + DV  + + L    + L    V+   T G  P   +T S ++ L + V +  TDL+E+K  + +    + T++++  ++ + +         YG  VV    +   ++ LV   T  PTL+ +TL   E  L L FSE V+A S+L  S+LSL
Sbjct:  841 TTSPTLDSFSLDLNSGIISLTFSETVDSTSIDV--STIQLLAGPDDLFNETVSYSLTPGSLPIGTQTLSSNSSLII-VSLGSTDLNEIKRLSELATEEANTYISITNNTIIDM---------YGNLVVPRDPEDPLMANLVVRDTTPPTLEEYTLDLDEGLLQLTFSETVNA-SSLVISSLSL 1010          
BLAST of mRNA_Ecto-sp6_S_contig11.1268.1 vs. uniprot
Match: A0A1X7V2J1_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V2J1_AMPQE)

HSP 1 Score: 61.2 bits (147), Expect = 5.510e-6
Identity = 45/163 (27.61%), Postives = 80/163 (49.08%), Query Frame = 0
Query:   18 ELETFSLDVDRGILAITFSEAMSNATDDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDSKDAGLTLAVQIHPTDLDEMK-AAYVGHNSSFTWLTLRGDSFVALDDRDGNEPVYGTQVVGHQGASVSELVEDTTRRPTLDRFTLGWTERKLVLFFSEGV 179
            +L+ F+LD+D+G++ ITF++ +   T   D TG+ +++    L G    L +       G   +  +G  L V +  TDL+E+K  + +  + S TW+T+R  +   + + D      G  V        ++++ DTT  P L +F L      L+L +SE V
Sbjct: 3180 QLDNFTLDLDQGLIHITFNDVVD--TSSFDPTGIVIQSAQYRLGGDWYALTS-------GSYTNTSSGYDLTVVLSDTDLNELKNRSLLATDDSNTWMTMRAKTVNDIFNVDIRATTDGNAV------QATDVINDTTN-PLLSQFELDLDSNLLLLTYSETV 3326          
BLAST of mRNA_Ecto-sp6_S_contig11.1268.1 vs. uniprot
Match: F0YP73_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP73_AURAN)

HSP 1 Score: 59.7 bits (143), Expect = 1.390e-5
Identity = 54/169 (31.95%), Postives = 78/169 (46.15%), Query Frame = 0
Query:   17 PELETFSLDVDRGILAITFSEAMSNATDDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDSKDAGLTLAVQIHPTDLDEMK-AAYVGHNSSFTWLTLRGDSFVALDDRDGNEPV-YGTQVVGHQGASVSELVEDTTRRPTLDRFTLGWTERKLVLFFSEGVDALS 183
            PEL +F+LD+D G+L +TFSE ++    DV   G+  R   N   G    LW T   P  G   + D   TL + +   DL+E+K  + +  ++  T + + G        RD   P  YG + +      V   V DTTR P L   +L      L+L F E V+A S
Sbjct:  342 PELVSFALDMDEGLLDLTFSETVNAYQFDVTCVGLQERAD-NRTGGLSHDLWGT---PYRGTLVTSDDAATLTLTLSADDLNEIKRVSRLAIDADTTNVYVEGTECY----RDNAWPANYGIRTLPTDALGVETYVPDTTR-PKLVSGSLDLDASVLILGFDETVNASS 501          
BLAST of mRNA_Ecto-sp6_S_contig11.1268.1 vs. uniprot
Match: A0A1X7V0M1_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V0M1_AMPQE)

HSP 1 Score: 59.3 bits (142), Expect = 2.180e-5
Identity = 52/168 (30.95%), Postives = 79/168 (47.02%), Query Frame = 0
Query:   17 PELETFSLDVDRGILAITFSEAMSNATDDVDWTGVSLRTHVNGLEGSGVTLWNTQGEPGWGETDSKDAGLTLAVQIHPTDLDEMKAAY-VGHNSSFTWLTLRGDSFVALDDRDGNEPVYGTQVVGHQGASVSELVEDTTRRPTLDRFTLGWTERKLVLFFSEGVDALS 183
            P L  F+LD++ G+L +TFSE++S ++ +       L   VNG    G +L  T G+       S D G  + + +  TDL+++KA   +G   + T++    D   A+ D   N      ++V    A  S  VE  T  PTL  F L      ++L FSE V A S
Sbjct: 14899 PTLSDFTLDLNTGVLKLTFSESVSASSFNP-----GLIFLVNGTSTGGSSLRLTGGDV------SADNGPIITINLTSTDLNDLKAITDLGTEPANTYIRFLSD---AVRDLTKN----AIEMVSVANARPSSSVEPDTTVPTLTEFVLDLNHGTILLTFSETVSASS 15048          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1268.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LAW6_ECTSI7.280e-29581.72TNFR-Cys domain-containing protein n=1 Tax=Ectocar... [more]
A0A1X7V1F8_AMPQE3.100e-630.60Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A1X7V2J1_AMPQE5.510e-627.61Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
F0YP73_AURAN1.390e-531.95Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A1X7V0M1_AMPQE2.180e-530.95Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..549
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..15
score: 0.917
IPR001368TNFR/NGFR cysteine-rich regionPROSITEPS50050TNFR_NGFR_2coord: 340..385
score: 10.344

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:884936..889037 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1268.1mRNA_Ecto-sp6_S_contig11.1268.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig11 884936..889037 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig11.1268.1 ID=prot_Ecto-sp6_S_contig11.1268.1|Name=mRNA_Ecto-sp6_S_contig11.1268.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=550bp
MLVLFLLLLLAAASAGPELETFSLDVDRGILAITFSEAMSNATDDVDWTG
VSLRTHVNGLEGSGVTLWNTQGEPGWGETDSKDAGLTLAVQIHPTDLDEM
KAAYVGHNSSFTWLTLRGDSFVALDDRDGNEPVYGTQVVGHQGASVSELV
EDTTRRPTLDRFTLGWTERKLVLFFSEGVDALSTLHPSALSLSLPSNSTW
LSPSNASSLLCSAVEFGRRQGSSNSASRREIVLHLDEPCAVEAAVTTYNA
TNGTSPQDEANTTTVEAFVGGYPSDWSMLVAAGVLLEGDDAGGAAIRSAT
NNNVSLILNATSSFVTDLSAAANPLVAVVDLEESFPDCQPCGNGTYRSEP
CTEVYDAVCATCAETCAGGDHFVLSPCTAETDLDCHRCTPCAFGTREIGE
CQQASDRVCEACTECEDAEYESRECRTSGEDRICETCLRCSLSPEVAEAC
RDSRSVRQWQTENCCETAMGEKIPCSDVALENLRVSAATGRWQWGRGQPA
GGGDRARDGVTPRDRLIEVEFRAGAKTVFDDPRYVGQEGPTGAGSTGEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001368TNFR/NGFR_Cys_rich_reg