prot_Ecto-sp6_S_contig11.1217.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig11.1217.1
Unique Nameprot_Ecto-sp6_S_contig11.1217.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length869
Homology
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BLAST of mRNA_Ecto-sp6_S_contig11.1217.1 vs. uniprot
Match: A0A6H5L7I3_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7I3_9PHAE)

HSP 1 Score: 1018 bits (2632), Expect = 0.000e+0
Identity = 700/873 (80.18%), Postives = 719/873 (82.36%), Query Frame = 0 
Query:    1 MDELFALFAREDDEGEGPPSAYGDEGDNIEIDVAEXXXXXXXXXXXHMEYRPVKRSRSVAAAVSPGVPGEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPPPARSELFEDDLRNRLSANPEVDAPAVAAAPLFQDEFSNHVVRATAADLHSRMPAAGGAARSIERAGAGRDLHGGLKGDGPLVKPPSGGTGGVKIGFSMMASSVAARSHKQQXXXXXXXXXXXXXXXXXA-GSSDVDVVLGEGKPSVEEKDASTPASNGSAVWLGGVVAAAKAAVTSTINPSDXXXXXXXXXXXXXXXXX--SQELPRNLECAMCFNPLAVAALFACGHGSCWECAHDWCSRETSSTMDCPTCHVSIPRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVERGQKLAREAEGRRRSLRDAQRSAEDTIAEQAAELEKLREEAKSRRVGRRALRAQDGSTSSMADFGFRVLNGGNLAGGRRRGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMPPSAAYGVVGPRGHAHHHPLSATAAAAAGSAGFGHAEGDPWFSLRPSQPSRGATGAMAPGRRMARETAGRGGSSGRSAXXXXXAAATMGLGQPAGAAFKSVHGHGRVGGGGTNWRSSAYLNPGRLSLSGGAXXXXXXXRARLHGSNARADPRGDTDVNVGPAAAGTPLDGGNLTNPGGGPGRSFTVQVPARSIRKAHGLSGLHGGGAIASGGPAGSAAAVAGTVLSYPNPLANGVGLAPXXXXXXXXXXXXXXXXXXXXXXXXSGGLPFGGRPHGRAAXXXXXXXXXX--APMLDLDELMAGHDDASSRSEWDDVLASISTPMQATDDARSNSPGATRG 868
            MD L AL A +DD+GEGPPSAY DE DNIEIDV E  XXXXXXXX +MEYRPVKRSRS AAAVSP VPG+EG  XXXXXXXXXX                      AQPPPARSELFEDD+RNRLSAN EVDA             SNHVV ATAADL SRMPA GGAARSIERAGAGRD  GGLK             GGVKIGFSMMASSVAARSH Q+                 A G  D+DVV+GEGKPSVEEK+ASTPASNGSA WLGGVVAAAKAAVTSTINP+           XXXXXXX  SQELPR LECA+CFNPLAVAALFACGHGSCWECAHDWCSRETSSTMDCPTCHVS+PRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVERGQKLAREAEGRRRSLRDAQRSAEDTIAEQAAELEKLREEAKSRRVGRRALRAQ+GSTSSMA+FGF VLNGGNL GGRRR F        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GMPPSAAYGVVGPRGHAH HPLSA AAAAAGS+GFGHAEGDPWFSLRPSQPSRGATGAMAPGRRMARETAGR GSSGRSA         MGLGQPA AA KSVHGHGR GGGGTNWRSSAYL+PGR SLSGGA XXXX  R RLHGS+ARADPRG TDVNVG AAAGTPLDGGNLTNP GGPGRSFTVQVPARSIRK HGLSGLHGGGA ASGG AGSAAAV GT  SYPNPLANG+GLAP XXXXXXXXXXXXXXXXXXXXXX  G LPFGGR HGRAAXXXXXXXXXX  APMLDL +LMAGHDDASSRSEWDDVLASISTPMQATDDARSNSPGATRG
Sbjct:    1 MDVLSALLAGDDDDGEGPPSAYDDERDNIEIDVGEPEXXXXXXXX-NMEYRPVKRSRSAAAAVSPDVPGDEGGRXXXXXXXXXXSGRLNDHEESKEVIEILSDDEDAQPPPARSELFEDDMRNRLSANLEVDAXXXXXXXXXXX-XSNHVVGATAADLRSRMPAGGGAARSIERAGAGRDPRGGLK-------------GGVKIGFSMMASSVAARSHDQEMQQTAAAATDHGGAPAAAAGRGDIDVVMGEGKPSVEEKEASTPASNGSAGWLGGVVAAAKAAVTSTINPTSDGDVGIGGSTXXXXXXXXXSQELPRILECAVCFNPLAVAALFACGHGSCWECAHDWCSRETSSTMDCPTCHVSVPRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVERGQKLAREAEGRRRSLRDAQRSAEDTIAEQAAELEKLREEAKSRRVGRRALRAQEGSTSSMAEFGFGVLNGGNLTGGRRRDFFDPASQRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFGMPPSAAYGVVGPRGHAHRHPLSA-AAAAAGSSGFGHAEGDPWFSLRPSQPSRGATGAMAPGRRMARETAGRSGSSGRSAGNSAAXXXXMGLGQPAAAALKSVHGHGRAGGGGTNWRSSAYLHPGRSSLSGGAGXXXXGGRTRLHGSSARADPRGGTDVNVGSAAAGTPLDGGNLTNPVGGPGRSFTVQVPARSIRKTHGLSGLHGGGASASGGHAGSAAAVVGTSTSYPNPLANGLGLAPPXXXXXXXXXXXXXXXXXXXXXXGDG-LPFGGRTHGRAAXXXXXXXXXXXXAPMLDLGDLMAGHDDASSRSEWDDVLASISTPMQATDDARSNSPGATRG 856
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1217.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7I3_9PHAE0.000e+080.18RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..51
NoneNo IPR availableCOILSCoilCoilcoord: 403..441
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 310..382
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 299..404
e-value: 1.0E-12
score: 49.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 318..360
score: 10.896

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:513798..520721 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1217.1mRNA_Ecto-sp6_S_contig11.1217.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig11 513798..520721 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig11.1217.1 ID=prot_Ecto-sp6_S_contig11.1217.1|Name=mRNA_Ecto-sp6_S_contig11.1217.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=869bp
MDELFALFAREDDEGEGPPSAYGDEGDNIEIDVAEAEEEEEEEEEEHMEY
RPVKRSRSVAAAVSPGVPGEEGGSRRGGGGAAASSGRLNDHEEAKEVIEI
LSDDEDAQPPPARSELFEDDLRNRLSANPEVDAPAVAAAPLFQDEFSNHV
VRATAADLHSRMPAAGGAARSIERAGAGRDLHGGLKGDGPLVKPPSGGTG
GVKIGFSMMASSVAARSHKQQVQQTAAAATGQGGAPPAAGSSDVDVVLGE
GKPSVEEKDASTPASNGSAVWLGGVVAAAKAAVTSTINPSDDDVGIGGST
AAAAAAAASQELPRNLECAMCFNPLAVAALFACGHGSCWECAHDWCSRET
SSTMDCPTCHVSIPRSDFRRCVVLDEVVDRAVTAAGMDDDEWRARVERGQ
KLAREAEGRRRSLRDAQRSAEDTIAEQAAELEKLREEAKSRRVGRRALRA
QDGSTSSMADFGFRVLNGGNLAGGRRRGFFDPASQRSAVEEYTRRRVEEA
AVAAGPASSSRQARVAAAGEAAAAAAAALGMPPSAAYGVVGPRGHAHHHP
LSATAAAAAGSAGFGHAEGDPWFSLRPSQPSRGATGAMAPGRRMARETAG
RGGSSGRSAGSSAAAAATMGLGQPAGAAFKSVHGHGRVGGGGTNWRSSAY
LNPGRLSLSGGAGGGGGGGRARLHGSNARADPRGDTDVNVGPAAAGTPLD
GGNLTNPGGGPGRSFTVQVPARSIRKAHGLSGLHGGGAIASGGPAGSAAA
VAGTVLSYPNPLANGVGLAPPPSSSPSLHYSSSGGSQPSRGGGGSGGLPF
GGRPHGRAAAAAAAAAPSPAPMLDLDELMAGHDDASSRSEWDDVLASIST
PMQATDDARSNSPGATRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING