prot_Ecto-sp6_S_contig104.940.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig104.940.1
Unique Name	prot_Ecto-sp6_S_contig104.940.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	521

Homology

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BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot
Match: D7G6S0_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S0_ECTSI)

HSP 1 Score: 749 bits (1933), Expect = 4.540e-269
Identity = 453/463 (97.84%), Postives = 455/463 (98.27%), Query Frame = 0

Query:   45 MPQQYGQXXXXXXXXXXXPPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPTSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXAGGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTTHFRQPLLPGHNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXXQGDASATEVGIDSGPRGASTGGGDKYGARSNDHPHLAYIYRGRGTADETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDTAYMAAPASSVGGSGASPDPKGVSRARSSSPSAAANAALPHQSLEHAMQTKLTM 507
            MPQQYGQ XXXX      PPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAP+QSFYPPSLYGVPTSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXAGGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTTHFRQPLLPGHNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXXQGDASATEVGIDSGPRGASTGGGDKYGARSNDHPHLAYIYRGRGTADETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDD+AYMAAPASSVGGS ASPDPKGVSRARSSSPSAAANAALPHQSLEHAMQTKLTM
Sbjct:    1 MPQQYGQQXXXXADGYGGPPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPMQSFYPPSLYGVPTSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXAGGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTTHFRQPLLPGHNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXXQGDASATEVGIDSGPRGASTGGGDKYGARSNDHPHLAYIYRGRGTADETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDSAYMAAPASSVGGSAASPDPKGVSRARSSSPSAAANAALPHQSLEHAMQTKLTM 463

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BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot
Match: A0A6H5L5J0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J0_9PHAE)

HSP 1 Score: 517 bits (1332), Expect = 6.140e-180
Identity = 312/328 (95.12%), Postives = 316/328 (96.34%), Query Frame = 0

Query:  195 TTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTTHFRQPLLPGHNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXX-QGDASATEVGIDSGPRGASTGGGDKYGARSNDHPHLAYIYRGRGTA-DETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDTAYMAAPASSVGGSGASPDPKGVSRARSSSPSAAANAALPHQSLEHAMQTKLTMGGNGSPPSAAQPS 520
            T   L GPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQT HFRQPLLP HNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXX QGDASAT+VGID+GPRGASTGGGDKYGA SNDHPHLAYIYRGRGTA DETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDD+AYMAAP SSVGGS ASPDPKGVSRARSSSP AAANAALPHQSLEHAMQTKLT+GGNGSPPSAAQPS
Sbjct:    6 TGDGLAGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTAHFRQPLLPAHNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXXXQGDASATDVGIDAGPRGASTGGGDKYGAHSNDHPHLAYIYRGRGTAADETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDSAYMAAPTSSVGGSAASPDPKGVSRARSSSPGAAANAALPHQSLEHAMQTKLTIGGNGSPPSAAQPS 333

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BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot
Match: A0A6H5L539_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L539_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 9.250e-53
Identity = 122/150 (81.33%), Postives = 127/150 (84.67%), Query Frame = 0

Query:   63 PPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPTSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXAGGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHI 212
            PPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVP SVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXX GGNFYAG+       + G+P +T           LF+ HI
Sbjct:   17 PPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPPSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXXGGNFYAGE-----DRSIGRPTKTAGKTN-----RLFLIHI 156

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BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot
Match: A0A7S2V9D2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9D2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 6.520e-39
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 0

Query:  189 PGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            PG PIQTT   QGP+GCNLFVFHIPN+MTN  L+ LF +FGNV+SARIMVEK TGRSRGFGF+SYDN  SA+ AI  MNG+QI HKRLKVQHKKDK
Sbjct:   41 PGAPIQTTPLGQGPEGCNLFVFHIPNSMTNVDLYHLFLRFGNVVSARIMVEKHTGRSRGFGFISYDNAVSAKDAIKGMNGFQIGHKRLKVQHKKDK 136

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BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot
Match: K3WGX7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGX7_GLOUD)

HSP 1 Score: 148 bits (374), Expect = 1.050e-37
Identity = 77/109 (70.64%), Postives = 86/109 (78.90%), Query Frame = 0

Query:  177 YAGQGGYA-RSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            YA   GYA +   PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SA+ AI+ MNG+Q+  KRLKVQHKK+K
Sbjct:  116 YAQPYGYAPQVAGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIAGMNGFQVGRKRLKVQHKKEK 224

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BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot
Match: A0A8K1CK88_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK88_PYTOL)

HSP 1 Score: 147 bits (372), Expect = 2.020e-37
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 0

Query:  182 GYA-RSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            GYA +   PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ +GNVISARIMVEK TGRSRGFGFVSYDN  SAE+AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  113 GYAPQVAGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFAPYGNVISARIMVEKETGRSRGFGFVSYDNAASAEQAIKAMNGFQVGRKRLKVQHKKEK 216

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BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot
Match: M4B497_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B497_HYAAE)

HSP 1 Score: 148 bits (373), Expect = 2.550e-37
Identity = 92/209 (44.02%), Postives = 111/209 (53.11%), Query Frame = 0

Query:   76 RTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPTSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXAGGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            RT   ++  ++Q     AG   P     S   +G      G +   G P+Q  YPP  YG  + +YP+ Q   +                                   +   PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SA+ AI  MNG+Q+  KRLKVQHKK+K
Sbjct:   62 RTNAPQQQQLQQQQPTAAGFPQPQQQLDSQGSQGAAAAYGGYSQPYGQPMQ--YPPP-YGGSSYMYPFPQAYGYPP---------------------------------QIVGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEK 234

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BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot
Match: D0NCQ3_PHYIT (CUG-BP-and ETR-3-like factor, putative n=5 Tax=Phytophthora TaxID=4783 RepID=D0NCQ3_PHYIT)

HSP 1 Score: 147 bits (370), Expect = 5.530e-37
Identity = 73/96 (76.04%), Postives = 79/96 (82.29%), Query Frame = 0

Query:  189 PGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SAE AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  133 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 228

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BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot
Match: A0A024URK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URK9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.740e-37
Identity = 73/96 (76.04%), Postives = 78/96 (81.25%), Query Frame = 0

Query:  189 PGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F  FGNVISARIMVEK TGRSRGFGFVSYDN  SA+ AI  MNGYQ+  KRLKVQHKK+K
Sbjct:  159 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFQSFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGYQVGRKRLKVQHKKEK 254

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BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot
Match: G4ZPR3_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZPR3_PHYSP)

HSP 1 Score: 147 bits (370), Expect = 6.140e-37
Identity = 73/96 (76.04%), Postives = 79/96 (82.29%), Query Frame = 0

Query:  189 PGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SAE AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  135 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 230

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig104.940.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G6S0_ECTSI	4.540e-269	97.84	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L5J0_9PHAE	6.140e-180	95.12	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L539_9PHAE	9.250e-53	81.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S2V9D2_9STRA	6.520e-39	76.04	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
K3WGX7_GLOUD	1.050e-37	70.64	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A8K1CK88_PYTOL	2.020e-37	72.12	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
M4B497_HYAAE	2.550e-37	44.02	Uncharacterized protein n=1 Tax=Hyaloperonospora a...	[more]
D0NCQ3_PHYIT	5.530e-37	76.04	CUG-BP-and ETR-3-like factor, putative n=5 Tax=Phy...	[more]
A0A024URK9_9STRA	5.740e-37	76.04	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
G4ZPR3_PHYSP	6.140e-37	76.04	Uncharacterized protein n=3 Tax=Phytophthora TaxID...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 206..279 e-value: 5.1E-28 score: 109.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 207..277 e-value: 4.6E-22 score: 77.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 205..283 score: 19.382
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 186..290 e-value: 2.4E-29 score: 103.6
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 177..287
None	No IPR available	PANTHER	PTHR24012:SF686	CUGBP ELAV-LIKE FAMILY MEMBER 1	coord: 177..287
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 197..304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig104	contig	Ecto-sp6_S_contig104:167662..177394 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig104.940.1	mRNA_Ecto-sp6_S_contig104.940.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig104 167215..178361 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig104.940.1 ID=prot_Ecto-sp6_S_contig104.940.1|Name=mRNA_Ecto-sp6_S_contig104.940.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=521bp
MSYQQQHQGAPDGSRRQQQAPPFPLLGTNGAAAAGRAPAAGVYGMPQQYG
QQQQQQADGYGGPPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIA
STTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPTSVYPYQQPGAFP
GPYGGGAGGGAGGTAGGAGSTAGGNFYAGQGGYARSTNPGQPIQTTTNLQ
GPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGF
VSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGP
GVAAGRMQQTTHFRQPLLPGHNAGLRHHQGGDDKLPPPSPAADTGGAGVA
PGFTVSGGGGGGGGGGGEEDHHQGDASATEVGIDSGPRGASTGGGDKYGA
RSNDHPHLAYIYRGRGTADETGGYPSAGGGVDGKAAGDEKPQDQDSGYHG
RDDTAYMAAPASSVGGSGASPDPKGVSRARSSSPSAAANAALPHQSLEHA
MQTKLTMGGNGSPPSAAQPS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf