prot_Ecto-sp6_S_contig10.656.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp6_S_contig10.656.1
Unique Name	prot_Ecto-sp6_S_contig10.656.1
Type	polypeptide
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length	227

Homology

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BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot
Match: D7G8V9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V9_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 4.610e-139
Identity = 207/226 (91.59%), Postives = 210/226 (92.92%), Query Frame = 0

Query:    1 MKSVIAFSAVLASASAFVPSASFVGSPVSSVARPASSTAVSMAASDMVGASAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQASYRCCCRCFSFCLIVMFIGFLEYIISQIVAKPGYIPGDYVGANDLFNEEGAHSQWDTYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRGVYSGGIH 226
            MKSVIAFSAVLASASAFVPSASFVGSPVSSV RPASSTAVSMAASDMVGASAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ              IVMFIGFLEY+ISQIVAKPGYIPGDYVGANDLF+EEG HSQW+TYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRGVYSGGIH
Sbjct:    1 MKSVIAFSAVLASASAFVPSASFVGSPVSSVTRPASSTAVSMAASDMVGASAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQ--------------IVMFIGFLEYVISQIVAKPGYIPGDYVGANDLFSEEGPHSQWETYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRGVYSGGIH 212

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BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot
Match: I2CPJ1_NANGC (Protein fucoxanthin chlorophyll a c protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ1_NANGC)

HSP 1 Score: 160 bits (406), Expect = 5.380e-46
Identity = 100/223 (44.84%), Postives = 133/223 (59.64%), Query Frame = 0

Query:    5 IAFSAVLASASAFVPSASFVGSPVSSVARPASSTAVSMAASDMVGASAPLGFFDPMGFS-KGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQASYRCCCRCFSFCLIVMFIGFLEYIISQIVAKPGYIPGDYVGANDLFNEEGAHSQWDTYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRG---VYSG 223
            +A +  +AS SAFVP A          + P +   V+M    M+G+SAP   FDP+GF+ K   + LN YRE+ELKHGR AMLAV+G++ QE WHPLY+G LSSNP+KA+TEVP  G  Q              I + I  +EY+ ++I   PGY PGDY+G  +   +  +   WD YQ KEL+NGR AM+ I GL+  + +TG   A EQIS G   V+SG
Sbjct:    9 LAAAVTMASVSAFVPPAP---------SAPRTRGVVNMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWVVQEVWHPLYDGKLSSNPLKALTEVPLIGWAQ--------------IFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQ--SDEGWDNYQTKELNNGRLAMVAIAGLIAQDLITG-QAALEQISAGNTGVFSG 205

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BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot
Match: A0A7S3IA89_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3IA89_9SPIT)

HSP 1 Score: 145 bits (367), Expect = 1.700e-40
Identity = 80/167 (47.90%), Postives = 103/167 (61.68%), Query Frame = 0

Query:   46 DMVGASAPLGFFDPMGFSKGPAERLNA-YREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQASYRCCCRCFSFCLIVMFIGFLEYIISQIVAKPGYIPGDYVGANDLFNEEGAHSQWDTYQLKELHNGRAAMMGITGLVTHNFLTGGMP 211
            DMVGA  PLGFFDP+GFSK  +    A +REAELKHGR AMLA  G +T + +HPLY+G LSSNP+ AI +VP  GL Q              I++FIGF+E        +P Y PGD++G++     E     WD YQL+EL+NGR AM    G++TH ++TG  P
Sbjct:   19 DMVGACKPLGFFDPLGFSKDASPASMAKFREAELKHGRVAMLACAGMITADKFHPLYDGKLSSNPLLAIAQVPKLGLLQ--------------ILLFIGFMEVFGILNSRRPDYKPGDFLGSSQWDTTE----VWDNYQLRELNNGRLAMFASIGMLTHAYITGKGP 167

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BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot
Match: A0A7S0XDX8_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDX8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 4.830e-40
Identity = 87/172 (50.58%), Postives = 107/172 (62.21%), Query Frame = 0

Query:   46 DMVGASAPLGFFDPMGFSKGPA-ERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQASYRCCCRCFSFCLIVMFIGFLEYIISQIVAKPGYIPGDYVGANDLFNEEGAHSQWDTYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQI 216
            ++VGASAPLGFFDP GFSKG + E L  YRE+ELKHGR AMLAV+G+LTQE +HP Y G LS NP+ A  EVPP G  Q              I+ FIG LEYI   I  K  Y  GD++G   L + +   S+W + Q +EL+NGR AM  I G +TH  +TG   A EQ+
Sbjct:   37 ELVGASAPLGFFDPFGFSKGVSDETLFKYRESELKHGRVAMLAVLGWLTQERFHPFYEGKLSGNPLVAFGEVPPLGFVQ--------------IIAFIGLLEYI-GTIQNK--YQSGDFLGIKPLIDNQD-DSRWVSIQTRELNNGRLAMFAILGEITHAAITG-KGALEQL 189

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BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot
Match: A0A7S3AG67_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG67_9EUKA)

HSP 1 Score: 142 bits (357), Expect = 1.250e-38
Identity = 93/211 (44.08%), Postives = 126/211 (59.72%), Query Frame = 0

Query:   23 FVGSPVSSVA-----RPASS--TAVSMAASDMVGASAPLGFFDPMGFSKGPA-ERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQASYRCCCRCFSFCLIVMFIGFLEYIISQIVAKPGYIPGDYVGANDLFNEEGAHSQWDTYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRGVYSGGI 225
            F  SPV+ VA     RPA +  T+V+M   DMVG+SAPLGFFDP+GFSK  + E +  +REAELKHGR AMLAV G +T + +HPL+ G  SSNP+ A+T+VP  G  Q              I+ FI F+E I      +P Y PG+++G +    +    + WD+YQ KEL+NGR AM    G++TH ++TG  P  E +  G   GG+
Sbjct:   18 FSSSPVALVASGAMLRPALAPMTSVNMKI-DMVGSSAPLGFFDPLGFSKDASPETMKKFREAELKHGRVAMLAVFGMITADKFHPLFGGQCSSNPLLALTQVPKLGWLQ--------------ILTFIMFMEVIGILNSRRPDYEPGNFLGTSQWEMD----ATWDSYQTKELNNGRLAMFASIGMLTHAYITGKGP-LELLDAG--GGGV 206

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BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot
Match: A0A7S3TFW5_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TFW5_EMIHU)

HSP 1 Score: 141 bits (356), Expect = 1.820e-38
Identity = 81/180 (45.00%), Postives = 108/180 (60.00%), Query Frame = 0

Query:   47 MVGASAPLGFFDPMGFSKGPA-ERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQASYRCCCRCFSFCLIVMFIGFLEYIISQIVAKPGYIPGDYVGANDLFNEEGAHSQWDTYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRGVYSGGI 225
            MVG   PLG+FDP+GFSK  + E +  +REAELKHGR AMLA  G +T + +HPL+ G LSSNP+ AIT+VP  GL Q              I++FIGF+E        +P Y PG+++G +           WD YQL+EL+NGR AM G  G++TH ++TG  P  E +  G  +GGI
Sbjct:   49 MVGDCKPLGYFDPLGFSKDASPETMAKFREAELKHGRVAMLACAGMITADKFHPLFGGKLSSNPLLAITQVPKLGLLQ--------------ILLFIGFMEVFGILNSRRPDYEPGNFLGTSQWETTP----TWDAYQLRELNNGRLAMFGAIGMLTHAYITGKGP-LELLDAG--NGGI 207

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BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot
Match: A0A7S2XY15_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY15_9STRA)

HSP 1 Score: 140 bits (352), Expect = 5.950e-38
Identity = 91/203 (44.83%), Postives = 123/203 (60.59%), Query Frame = 0

Query:    4 VIAFSAVLASASAFVPSASFVGSPVSSVARPASSTAVSMAASDMVGASAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQASYRCCCRCFSFCLIVMFIGFLEYIISQIVAKPGYIPGDYVGANDLFNEEGAHSQWDTYQLKELHNGRAAMMGITGLVTHNFL 206
            VIAF+A++A ASAFV   + +G+ +SS     +  A+ MAA DMVG+ APLGFFDP+G SK     L  +RE ELKHGR AMLAV+G + QE +HPL+ GG S +P     +VP     Q               + FIG +E + ++I  + GY+ GD  GA+ L   + A   W+ YQLKEL+ GRAAM GI G++TH+ L
Sbjct:    5 VIAFAALVAGASAFVAPRASLGA-ISSARD--TQGAMQMAAEDMVGSCAPLGFFDPLGLSKKSDAELQKFRECELKHGRVAMLAVLGCVVQEVFHPLF-GGDSGDPWSLAAKVPFAAWAQT--------------LAFIGGVELLSNEIKKQDGYVTGDLFGASVLV--DAADEGWENYQLKELNQGRAAMFGIMGMLTHSAL 187

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BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot
Match: A0A7S0E1K9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E1K9_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 6.320e-38
Identity = 80/187 (42.78%), Postives = 112/187 (59.89%), Query Frame = 0

Query:   27 PVSSVARPASST-AVSMAASDMVGASAPLGFFDPMGFSKGPA-ERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQASYRCCCRCFSFCLIVMFIGFLEYIISQIVAKPGYIPGDYVGANDLFNEEGAHSQWDTYQLKELHNGRAAMMGITGLVTHNFLTGGMP 211
            P   + RPASS+ AV M    ++G  APL +FDP+GFSK  + E +  YREAELKHGR AMLA  G +TQ+ WHPL++G LS+NP+ AI + P  G+ Q              I++FI F+E I      +  Y PG+++G++     E     W+ YQLKEL+NGR AM G  G++  +++TG  P
Sbjct:   13 PTPVLVRPASSSVAVQMKVGGLIGDCAPLAYFDPLGFSKDASPETMKKYREAELKHGRVAMLAAWGMITQDAWHPLFDGKLSANPLLAIIQTPKLGVIQ--------------ILIFIAFIEVIGILNTRRADYEPGNFLGSSQWETGE----TWENYQLKELNNGRLAMFGSIGMLVGSYITGKGP 181

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BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot
Match: Q2IA68_ISOGA (Chloroplast light harvesting protein isoform 11 n=1 Tax=Isochrysis galbana TaxID=37099 RepID=Q2IA68_ISOGA)

HSP 1 Score: 139 bits (351), Expect = 7.090e-38
Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 0

Query:   47 MVGASAPLGFFDPMGFSK--GPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQASYRCCCRCFSFCLIVMFIGFLEYIISQIVAKPGYIPGDYVGANDLFNEEGAHSQWDTYQLKELHNGRAAMMGITGLVTHNFLTGGMP 211
            MVG SAPLGFFDP GFSK   PA  +  +REAELKHGR AMLA  G +T + +HPLY+G LSSNP+ AI++VP  GL Q              IV+FIGF+E        +P Y PG+++G+     E GA   WD +Q++EL+NGR AM    G++TH+ +TG  P
Sbjct:   38 MVGDSAPLGFFDPFGFSKEASPAS-MAKFREAELKHGRVAMLASAGMITADKFHPLYDGKLSSNPLLAISQVPKLGLLQ--------------IVLFIGFMEVFGILNSRRPDYQPGNFLGSAQW--ETGA--SWDDFQVRELNNGRLAMFASIGMLTHSSITGKGP 185

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BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot
Match: A0A7S4B2U4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2U4_CHRCT)

HSP 1 Score: 137 bits (345), Expect = 7.680e-37
Identity = 76/167 (45.51%), Postives = 100/167 (59.88%), Query Frame = 0

Query:   47 MVGASAPLGFFDPMGFSK--GPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQASYRCCCRCFSFCLIVMFIGFLEYIISQIVAKPGYIPGDYVGANDLFNEEGAHSQWDTYQLKELHNGRAAMMGITGLVTHNFLTGGMP 211
            +VG SAPLGFFDP+G++K   PA+ L  YRE ELKHGR AMLA +G +  + WHPLY GG S+NP+ AIT+VP  GL Q              I+ FIGF+E +    + +  Y PG+++G+      E     WD YQ +EL+NGR AM    G++ H  LTG  P
Sbjct:   55 LVGDSAPLGFFDPLGYTKKASPAD-LKKYRECELKHGRVAMLASMGMVVADFWHPLYGGGNSANPLVAITQVPKAGLLQ--------------ILAFIGFMEVMGQLNMQRADYEPGNFLGSGQWETSE----SWDDYQTRELNNGRLAMFASIGMLAHAALTGKGP 202

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig10.656.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8V9_ECTSI	4.610e-139	91.59	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
I2CPJ1_NANGC	5.380e-46	44.84	Protein fucoxanthin chlorophyll a c protein n=1 Ta...	[more]
A0A7S3IA89_9SPIT	1.700e-40	47.90	Hypothetical protein (Fragment) n=1 Tax=Favella eh...	[more]
A0A7S0XDX8_9STRA	4.830e-40	50.58	Hypothetical protein n=2 Tax=Chromulina nebulosa T...	[more]
A0A7S3AG67_9EUKA	1.250e-38	44.08	Hypothetical protein n=1 Tax=Haptolina ericina Tax...	[more]
A0A7S3TFW5_EMIHU	1.820e-38	45.00	Hypothetical protein n=1 Tax=Emiliania huxleyi Tax...	[more]
A0A7S2XY15_9STRA	5.950e-38	44.83	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S0E1K9_9EUKA	6.320e-38	42.78	Hypothetical protein n=1 Tax=Phaeocystis antarctic...	[more]
Q2IA68_ISOGA	7.090e-38	48.50	Chloroplast light harvesting protein isoform 11 n=...	[more]
A0A7S4B2U4_CHRCT	7.680e-37	45.51	Hypothetical protein n=1 Tax=Chrysotila carterae T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 31..223 e-value: 3.3E-27 score: 97.3
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 47..204 e-value: 1.5E-29 score: 103.6
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 4..212
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..32
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..226
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..32
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..16 score: 0.649
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 36..208
None	No IPR available	TMHMM	TMhelix		coord: 4..26
None	No IPR available	TMHMM	TMhelix		coord: 132..154
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 4..212

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig10	contig	Ecto-sp6_S_contig10:2442375..2447907 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig10.656.1	mRNA_Ecto-sp6_S_contig10.656.1	Ectocarpus species6 EcLAC_371	mRNA	Ecto-sp6_S_contig10 2442317..2450037 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp6_S_contig10.656.1 ID=prot_Ecto-sp6_S_contig10.656.1|Name=mRNA_Ecto-sp6_S_contig10.656.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=227bp
MKSVIAFSAVLASASAFVPSASFVGSPVSSVARPASSTAVSMAASDMVGA
SAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPL
YNGGLSSNPVKAITEVPPEGLFQASYRCCCRCFSFCLIVMFIGFLEYIIS
QIVAKPGYIPGDYVGANDLFNEEGAHSQWDTYQLKELHNGRAAMMGITGL
VTHNFLTGGMPAFEQISRGVYSGGIH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln