prot_Ecto-sp6_S_contig10.484.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig10.484.1
Unique Nameprot_Ecto-sp6_S_contig10.484.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length173
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.484.1 vs. uniprot
Match: D8LST5_ECTSI (DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST5_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 1.900e-94
Identity = 153/156 (98.08%), Postives = 156/156 (100.00%), Query Frame = 0
Query:   18 MKCSLLLALAFRAQSGQGFVGPTGGLVLSNCVSVAARSNNNIVRRGVASTSLKAAASDEGSDASVNLRKPAVVEAIAERSDLNKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMVR 173
            MKCSLLLALAFRAQSGQGFVGPTGGLVLSNCVSVAARSNNNIVRRGVASTSLKAAASDEGSDASVNLRKPAVVEAIAERS+L+KNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMV+
Sbjct:    1 MKCSLLLALAFRAQSGQGFVGPTGGLVLSNCVSVAARSNNNIVRRGVASTSLKAAASDEGSDASVNLRKPAVVEAIAERSNLDKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMVK 156          
BLAST of mRNA_Ecto-sp6_S_contig10.484.1 vs. uniprot
Match: A0A835Z9S8_9STRA (DNA-binding protein HU n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.190e-23
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 0
Query:   84 LRKPAVVEAIAERSDLNKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMVR 173
            ++K   V +I+ +S L+K Q +AA++AF D VM+ VADG K+SL GFGTFE R R  R GRNP+TGE L I A+ APAFSA+KAFKD V+
Sbjct:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 90          
BLAST of mRNA_Ecto-sp6_S_contig10.484.1 vs. uniprot
Match: A0A0P7ZD62_9CYAN (DNA-binding protein HU-beta n=1 Tax=Phormidesmis priestleyi Ana TaxID=1666911 RepID=A0A0P7ZD62_9CYAN)

HSP 1 Score: 94.7 bits (234), Expect = 2.770e-22
Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 0
Query:   84 LRKPAVVEAIAERSDLNKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMV 172
            + K  +++AIAE++D++K   +A L A  + +M+ VA G+KISL GFG+FE R RK R GRNP+TGE +KI ATT PAFSA K FK MV
Sbjct:    1 MNKTELIDAIAEKADVSKKDTDAVLTATINAIMEAVASGDKISLIGFGSFEPRERKARDGRNPQTGETIKIPATTVPAFSAGKGFKQMV 89          
BLAST of mRNA_Ecto-sp6_S_contig10.484.1 vs. uniprot
Match: UPI001A01FA4A (HU family DNA-binding protein n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI001A01FA4A)

HSP 1 Score: 94.7 bits (234), Expect = 3.180e-22
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 0
Query:   84 LRKPAVVEAIAERSDLNKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMV 172
            + K  +V+AIA ++++ K +A+A L+A  DVVM+ VA  +K++L GFGTFE R R+ R GRNP TG+ +KI ATT PAFSA K FK+MV
Sbjct:    1 MNKAELVDAIAAKAEVTKKEADAVLSAMIDVVMESVASNDKVTLVGFGTFEARQRQAREGRNPSTGQPIKIPATTVPAFSAGKGFKEMV 89          
BLAST of mRNA_Ecto-sp6_S_contig10.484.1 vs. uniprot
Match: A0A7S1Y344_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y344_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.210e-22
Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 0
Query:   84 LRKPAVVEAIAERSDLNKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKD 170
            +RKPA+VE +AER   +K+++  A+ A  D +M+ VADG K++LQGFGTF+   RK RTGRNP+TGE L+IKA+  P+FSA+K FK+
Sbjct:   66 VRKPALVEMVAERMGTSKSESTQAIEAVVDTIMEVVADGKKLNLQGFGTFKLSERKARTGRNPKTGESLEIKASKTPSFSAAKGFKE 152          
BLAST of mRNA_Ecto-sp6_S_contig10.484.1 vs. uniprot
Match: A0A7U9RZC3_9FIRM (DNA-binding protein HU n=3 Tax=Eubacteriales TaxID=186802 RepID=A0A7U9RZC3_9FIRM)

HSP 1 Score: 93.2 bits (230), Expect = 1.020e-21
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 0
Query:   84 LRKPAVVEAIAERSDLNKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMV 172
            + K  +V AIA++++L+K  AEAAL AFTDVV +E+  G KI L GFGTFE   R  RTGRNP+TG E++I A+ AP F A KA KDM+
Sbjct:    1 MNKAELVAAIADKTELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARTGRNPQTGAEMEIPASKAPKFKAGKALKDMI 89          
BLAST of mRNA_Ecto-sp6_S_contig10.484.1 vs. uniprot
Match: K9RYJ2_SYNP3 (Bacterial nucleoid DNA-binding protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RYJ2_SYNP3)

HSP 1 Score: 93.2 bits (230), Expect = 1.420e-21
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 0
Query:   84 LRKPAVVEAIAERSDLNKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMV 172
            + K  +V+A+A+++++ K QAE  ++A  DV+M  VADG+K++L GFG FE R RK R GRNP+TGE+++I AT  PAFSA K FK+ V
Sbjct:    1 MNKAELVDAVADKANVTKKQAEVVISAAVDVIMDAVADGDKVTLVGFGAFEPRERKAREGRNPKTGEKMEIPATKVPAFSAGKLFKEKV 89          
BLAST of mRNA_Ecto-sp6_S_contig10.484.1 vs. uniprot
Match: B4WQZ6_SYNS7 (DNA-binding protein HU n=1 Tax=Synechococcus sp. (strain ATCC 29403 / PCC 7335) TaxID=91464 RepID=B4WQZ6_SYNS7)

HSP 1 Score: 92.4 bits (228), Expect = 2.100e-21
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 0
Query:   84 LRKPAVVEAIAERSDLNKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMV 172
            + K  +++ +AE++D++K  A+  L A  D +M+ VA G+K+SL GFG+FE R RK R GRNP+TGE +KI ATT PAFSA K FK +V
Sbjct:    1 MNKAELIDMVAEKADVSKKDADVVLTAVIDSIMESVAKGDKVSLVGFGSFEPRDRKARDGRNPQTGETIKIPATTVPAFSAGKGFKQLV 89          
BLAST of mRNA_Ecto-sp6_S_contig10.484.1 vs. uniprot
Match: A0A6M8B627_9CYAN (HU family DNA-binding protein n=11 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M8B627_9CYAN)

HSP 1 Score: 92.0 bits (227), Expect = 2.880e-21
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 0
Query:   84 LRKPAVVEAIAERSDLNKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMV 172
            + K  +V+A+AE++++ K QA+A L+A  D +M+ V+ G K++L GFG+FE R RK R GRNP+TGE +KI AT  PAFSA K FKD+V
Sbjct:    1 MNKGELVDAVAEKANVTKKQADAVLSAAIDSIMEAVSKGEKVTLVGFGSFEPRERKEREGRNPKTGEAMKIPATKVPAFSAGKLFKDLV 89          
BLAST of mRNA_Ecto-sp6_S_contig10.484.1 vs. uniprot
Match: UPI001FD33922 (HU family DNA-binding protein n=1 Tax=Cuneatibacter sp. NSJ-177 TaxID=2931401 RepID=UPI001FD33922)

HSP 1 Score: 91.3 bits (225), Expect = 5.610e-21
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 0
Query:   84 LRKPAVVEAIAERSDLNKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMV 172
            + K  ++ A+AE+++++K  AE AL AFTD V QE+ +G K+ L GFGTFE   R+ R GRNPRTGE +KI AT  P F A KA KDM+
Sbjct:    1 MNKTELIAAVAEKAEISKKDAEKALKAFTDTVAQELKNGEKVQLVGFGTFEVSQREAREGRNPRTGETMKIAATKMPKFKAGKALKDMM 89          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.484.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST5_ECTSI1.900e-9498.08DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835Z9S8_9STRA1.190e-2357.78DNA-binding protein HU n=1 Tax=Tribonema minus Tax... [more]
A0A0P7ZD62_9CYAN2.770e-2255.06DNA-binding protein HU-beta n=1 Tax=Phormidesmis p... [more]
UPI001A01FA4A3.180e-2253.93HU family DNA-binding protein n=1 Tax=filamentous ... [more]
A0A7S1Y344_9STRA5.210e-2255.17Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7U9RZC3_9FIRM1.020e-2156.18DNA-binding protein HU n=3 Tax=Eubacteriales TaxID... [more]
K9RYJ2_SYNP31.420e-2151.69Bacterial nucleoid DNA-binding protein n=1 Tax=Syn... [more]
B4WQZ6_SYNS72.100e-2151.69DNA-binding protein HU n=1 Tax=Synechococcus sp. (... [more]
A0A6M8B627_9CYAN2.880e-2152.81HU family DNA-binding protein n=11 Tax=Cyanobacter... [more]
UPI001FD339225.610e-2152.81HU family DNA-binding protein n=1 Tax=Cuneatibacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000119Histone-like DNA-binding proteinPRINTSPR01727DNABINDINGHUcoord: 141..154
score: 64.29
coord: 157..171
score: 34.98
coord: 123..138
score: 45.36
IPR000119Histone-like DNA-binding proteinSMARTSM00411bhlneucoord: 84..173
e-value: 2.1E-28
score: 110.3
IPR000119Histone-like DNA-binding proteinPFAMPF00216Bac_DNA_bindingcoord: 86..172
e-value: 8.5E-27
score: 93.2
IPR000119Histone-like DNA-binding proteinPANTHERPTHR33175FAMILY NOT NAMEDcoord: 72..172
IPR010992Integration host factor (IHF)-like DNA-binding domain superfamilyGENE3D4.10.520.10coord: 84..173
e-value: 4.7E-29
score: 102.5
IPR010992Integration host factor (IHF)-like DNA-binding domain superfamilySUPERFAMILY47729IHF-like DNA-binding proteinscoord: 85..173
NoneNo IPR availablePANTHERPTHR33175:SF3DNA-BINDING PROTEIN HU-BETAcoord: 72..172
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..35
score: 0.499
IPR020816Histone-like DNA-binding protein, conserved sitePROSITEPS00045HISTONE_LIKEcoord: 129..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:682941..687112 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.484.1mRNA_Ecto-sp6_S_contig10.484.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig10 682941..687112 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig10.484.1 ID=prot_Ecto-sp6_S_contig10.484.1|Name=mRNA_Ecto-sp6_S_contig10.484.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=173bp
SCSLRGVPPTRTTAASTMKCSLLLALAFRAQSGQGFVGPTGGLVLSNCVS
VAARSNNNIVRRGVASTSLKAAASDEGSDASVNLRKPAVVEAIAERSDLN
KNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGE
ELKIKATTAPAFSASKAFKDMVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000119Hist_DNA-bd
IPR010992IHF-like_DNA-bd_dom_sf
IPR020816Histone-like_DNA-bd_CS