prot_Ecto-sp6_S_contig10.442.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig10.442.1
Unique Nameprot_Ecto-sp6_S_contig10.442.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length204
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.442.1 vs. uniprot
Match: A0A6H5KG72_9PHAE (S1-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG72_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 2.010e-100
Identity = 157/174 (90.23%), Postives = 158/174 (90.80%), Query Frame = 0
Query:   30 MRNILWLLGVAALSSTGEAFVGVPVRATALVAGGRASQQESCCTSLVTRNIHRTFAVDHDGHETNRRPANMARVTATSALLAKKKGRGGGNNEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYKK 203
            MRNILWLLGVAALSS GEAFVGVPVRATALVA GRASQQESCCTSLVT +IHRTFAVDHDG ET RRPANM R  ATSALLAK        NEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYKK
Sbjct:    1 MRNILWLLGVAALSSMGEAFVGVPVRATALVARGRASQQESCCTSLVTHSIHRTFAVDHDGQETARRPANMGRAAATSALLAKXXXXXXXXNEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYKK 174          
BLAST of mRNA_Ecto-sp6_S_contig10.442.1 vs. uniprot
Match: D7G916_ECTSI (S1-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G916_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 3.160e-57
Identity = 103/131 (78.63%), Postives = 103/131 (78.63%), Query Frame = 0
Query:  100 MARVTATSALLAKKKGRGGGNNEGAKPRERKEKDDVIE---------------------------VEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYKK 203
            MARV ATSALLAKKKGRGGGNNEGAKPRERKEKDDVIE                           VEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYKK
Sbjct:    1 MARVAATSALLAKKKGRGGGNNEGAKPRERKEKDDVIEPDSIFTSHAEKDCSAKACRMLVLLSQKVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYKK 131          
BLAST of mRNA_Ecto-sp6_S_contig10.442.1 vs. uniprot
Match: A0A835YXL6_9STRA (S1-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXL6_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.890e-46
Identity = 79/103 (76.70%), Postives = 89/103 (86.41%), Query Frame = 0
Query:  101 ARVTATSALLAKKKGRGGGNNEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYKK 203
            +R   T+ +  KKKGRGG N EGA PRE+K KDDVIEVEGVVKE LPSAMFRVE+  T +++LCTISG+IRKNFVRILVGDPV+VELSPYDLTRGRITFRYKK
Sbjct:   43 SRRQCTTIMHQKKKGRGGQNTEGATPREKKVKDDVIEVEGVVKESLPSAMFRVEISPTNQIILCTISGKIRKNFVRILVGDPVKVELSPYDLTRGRITFRYKK 145          
BLAST of mRNA_Ecto-sp6_S_contig10.442.1 vs. uniprot
Match: A0A7S4EBF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBF0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 8.280e-32
Identity = 68/100 (68.00%), Postives = 79/100 (79.00%), Query Frame = 0
Query:  102 RVTATSALLAKKKGRGGGNNEGAKP-RERKEKDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 200
            R    + L AKKK +   + +  KP RERK KDD IEV+GVV E LPSA FRVE+GAT +V+LCTISG+IRKNFV+ILVGD V+VELSPYDLTRGRITFR
Sbjct:   31 RAPGRTQLDAKKKKK---DLQAPKPVRERKVKDDKIEVDGVVTEALPSANFRVEIGATKQVLLCTISGKIRKNFVKILVGDSVKVELSPYDLTRGRITFR 127          
BLAST of mRNA_Ecto-sp6_S_contig10.442.1 vs. uniprot
Match: A0A6U1NIU1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NIU1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.440e-31
Identity = 58/72 (80.56%), Postives = 66/72 (91.67%), Query Frame = 0
Query:  132 KDDVIEVEGVVKEGLPSAMFRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYKK 203
            K+DVIEVEGVVKE LP+AMFRVE+ A   V+LCTISG+IRKNFV++LVGD VRVELSPYDLTRGRITFRY+K
Sbjct:   90 KEDVIEVEGVVKESLPNAMFRVELEANQNVILCTISGKIRKNFVKVLVGDSVRVELSPYDLTRGRITFRYRK 161          
BLAST of mRNA_Ecto-sp6_S_contig10.442.1 vs. uniprot
Match: A0A1Z5KC21_FISSO (Translation initiation factor IF-1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC21_FISSO)

HSP 1 Score: 110 bits (276), Expect = 8.250e-28
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 0
Query:  101 ARVTATSALLAKKKGRGGGNNEGAKP-RERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 202
            A +  +SA+  KK+ R  GN    K  R RK KDDVIEVE VV EGLP+AMFR  + GA  + + +L TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFRY+
Sbjct:   20 ATLRQSSAIYGKKEARAQGNERKNKTERVRKTKDDVIEVEAVVVEGLPNAMFRCAIDGAPESQEPILATISGKIRKNFVKILVGDKVLIELSPYDLTRGRITFRYR 125          
BLAST of mRNA_Ecto-sp6_S_contig10.442.1 vs. uniprot
Match: A0A7R9YY09_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YY09_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.860e-27
Identity = 65/98 (66.33%), Postives = 74/98 (75.51%), Query Frame = 0
Query:  107 SALLAKKKGRGGGNNEGAKP-RERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 200
            +AL  KK  R  GN    K  RE+K+KDDVIEVEGVV E LP+AMFR  + GA  T + VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   56 TALFGKKAARAQGNERKNKTVREKKKKDDVIEVEGVVLESLPNAMFRCAIDGAPDTQEPVLATISGKIRKNFVKILVGDKVTIELSPYDLTRGRITFR 153          
BLAST of mRNA_Ecto-sp6_S_contig10.442.1 vs. uniprot
Match: A0A7S4K9U1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K9U1_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.440e-27
Identity = 64/108 (59.26%), Postives = 76/108 (70.37%), Query Frame = 0
Query:   97 PANMARVTATSALLAKKKGRGGGNNEGAKP-RERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 200
            P +++     + L  KK  R  GN    +P RE+K KDDVIEVEG V E LP+AMFR  + GA  T + VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   46 PVHVSVAVPNTILFGKKAARAQGNERKNRPVREKKVKDDVIEVEGTVLESLPNAMFRCAIDGAPETQEPVLATISGKIRKNFVKILVGDTVTIELSPYDLTRGRITFR 153          
BLAST of mRNA_Ecto-sp6_S_contig10.442.1 vs. uniprot
Match: A0A6U4EV19_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4EV19_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.030e-26
Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 0
Query:  101 ARVTATSALLAKKKGRGGGNNEGAKP-RERKEKDDVIEVEGVVKEGLPSAMFRVEV-GA--TGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR 200
            A V + +AL  KK  R  GN    K  R RK+KDDVIEVEG V E LP+AMFR  + GA  T + VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR
Sbjct:   48 ATVPSKTALFGKKAARAQGNERKNKTERVRKKKDDVIEVEGTVIESLPNAMFRCAIDGAPETQEPVLATISGKIRKNFVKILVGDSVTIELSPYDLTRGRITFR 151          
BLAST of mRNA_Ecto-sp6_S_contig10.442.1 vs. uniprot
Match: A0A1E7F4X1_9STRA (Translation initiation factor IF-1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4X1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.080e-26
Identity = 62/107 (57.94%), Postives = 79/107 (73.83%), Query Frame = 0
Query:  100 MARVTATSALLAKKKGRGGGN-NEGAKPRERKEKDDVIEVEGVVKEGLPSAMFRV---EVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFRYK 202
            ++ +++ SAL  KK+ R  GN ++  K R +K KDDVIEV G+V E LP+AMFR    E   T + VL TISG+IRKNFV+ILVGD V +ELSPYDLTRGRITFR++
Sbjct:   49 VSSISSGSALFGKKEARAQGNESKRKKNRVKKVKDDVIEVNGIVLESLPNAMFRCAIEEAPDTQEPVLATISGKIRKNFVKILVGDKVLMELSPYDLTRGRITFRHR 155          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.442.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG72_9PHAE2.010e-10090.23S1-like domain-containing protein n=1 Tax=Ectocarp... [more]
D7G916_ECTSI3.160e-5778.63S1-like domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YXL6_9STRA2.890e-4676.70S1-like domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S4EBF0_9STRA8.280e-3268.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U1NIU1_9STRA1.440e-3180.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5KC21_FISSO8.250e-2861.32Translation initiation factor IF-1 n=1 Tax=Fistuli... [more]
A0A7R9YY09_9STRA3.860e-2766.33Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4K9U1_9STRA5.440e-2759.26Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6U4EV19_9STRA1.030e-2663.46Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1E7F4X1_9STRA1.080e-2657.94Translation initiation factor IF-1 n=1 Tax=Fragila... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 136..200
e-value: 2.5E-21
score: 75.3
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 126..202
score: 18.452
NoneNo IPR availableGENE3D2.40.50.140coord: 123..202
e-value: 7.3E-30
score: 104.5
NoneNo IPR availablePANTHERPTHR33370:SF1TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 99..202
NoneNo IPR availableTMHMMTMhelixcoord: 32..54
IPR004368Translation initiation factor IF-1TIGRFAMTIGR00008TIGR00008coord: 132..201
e-value: 2.6E-26
score: 89.4
IPR004368Translation initiation factor IF-1PANTHERPTHR33370FAMILY NOT NAMEDcoord: 99..202
IPR004368Translation initiation factor IF-1HAMAPMF_00075IF_1coord: 130..202
score: 23.172
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 114..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:230341..234725 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.442.1mRNA_Ecto-sp6_S_contig10.442.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig10 230149..235483 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig10.442.1 ID=prot_Ecto-sp6_S_contig10.442.1|Name=mRNA_Ecto-sp6_S_contig10.442.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=204bp
MRTSWSLHAVSHITQVPCLILRVYRALSNMRNILWLLGVAALSSTGEAFV
GVPVRATALVAGGRASQQESCCTSLVTRNIHRTFAVDHDGHETNRRPANM
ARVTATSALLAKKKGRGGGNNEGAKPRERKEKDDVIEVEGVVKEGLPSAM
FRVEVGATGKVVLCTISGRIRKNFVRILVGDPVRVELSPYDLTRGRITFR
YKK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006196RNA-binding_domain_S1_IF1
IPR004368TIF_IF1
IPR012340NA-bd_OB-fold