mRNA_Ecto-sp6_S_contig99.18873.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18873.1
Unique NamemRNA_Ecto-sp6_S_contig99.18873.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18873.1 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE)

HSP 1 Score: 466 bits (1200), Expect = 4.660e-163
Identity = 237/247 (95.95%), Postives = 243/247 (98.38%), Query Frame = 1 
Query:    1 MGVSLLKLGVGLSVALGLGRAQPSGVKRASVERGGLVFQSDACPQAISKEEAAALEADDSLPGGILSVGSLDAIGRSGNHYEVVTRVFSMSFCCQYKVVTMPEQDTVLPTENGDRLELRHNTYSFSSADAALRTEHLGFGDISTDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCSWKDEGEEERRSLLRATSAEEGEDKRNAGSSPRGKGQSLVVHMRSGD 741
            MGVSLLKLGVGLSVALGLGRAQPSGVKRASVERGGLVFQSDACPQAISKEEAAALEAD+SLPGGILSVGSLDAIGRSGNHYEVVTRVFSMSFCCQYKVV MPEQDTVLPTENGD LELRHNTYSFSSADAALRTEHLG+GDI+TDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFC WKDEG+EERRSLLRATSA EGEDKR+AGSSP+GKGQSLVVHMRSGD
Sbjct:    1 MGVSLLKLGVGLSVALGLGRAQPSGVKRASVERGGLVFQSDACPQAISKEEAAALEADESLPGGILSVGSLDAIGRSGNHYEVVTRVFSMSFCCQYKVVRMPEQDTVLPTENGDTLELRHNTYSFSSADAALRTEHLGYGDIATDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCRWKDEGKEERRSLLRATSAVEGEDKRHAGSSPQGKGQSLVVHMRSGD 247
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BLAST of mRNA_Ecto-sp6_S_contig99.18873.1 vs. uniprot
Match: D8LSV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV8_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 1.470e-105
Identity = 150/158 (94.94%), Postives = 156/158 (98.73%), Query Frame = 1 
Query:  268 MSFCCQYKVVTMPEQDTVLPTENGDRLELRHNTYSFSSADAALRTEHLGFGDISTDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCSWKDEGEEERRSLLRATSAEEGEDKRNAGSSPRGKGQSLVVHMRSGD 741
            MSFCCQYKVVTMPEQDTVLPTENGD LELRHNTYSFSSADAALRTEHLG+GDISTDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCSWKDEGEEERRSLLRATSAEEG+DKRNAG+SPRGKGQSLVVH++ G+
Sbjct:    1 MSFCCQYKVVTMPEQDTVLPTENGDTLELRHNTYSFSSADAALRTEHLGYGDISTDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCSWKDEGEEERRSLLRATSAEEGQDKRNAGTSPRGKGQSLVVHIKRGN 158
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BLAST of mRNA_Ecto-sp6_S_contig99.18873.1 vs. uniprot
Match: A0A6H5L7B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B0_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.720e-32
Identity = 84/225 (37.33%), Postives = 122/225 (54.22%), Query Frame = 1 
Query:   97 RGGLVFQSDACPQAISKEEAAALEADDSLPGGILSVGSLDAIGRSGNHYEVVTRVFSMSFCCQYKVVTMPEQDTVLPTENGDRLELRHNTYSFSSADAALRTEHLGFGDISTDPE-------ICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCSWKD---EGEEERRSLLRATSAEEGEDKRNAGSSPRGKGQSLVVHMRSGD 741
            R G+V Q   CPQAIS +EA    +    PGG+L++ S++ IGRSGNHY  ++ +FSM+FCCQ KV+ +P+ D  LPTE+G+R +   N +SFS             G + TD E       +CP  + + G         G+H  L +CM  V+M GC A +L + +G + A  S +    E E+E   L+  T++    ++R AGS        LVVH+RSGD
Sbjct:   38 RHGVVVQDRGCPQAISPDEADIRRSTRGWPGGVLTLSSIERIGRSGNHYMAISTLFSMAFCCQVKVLELPDMDWRLPTESGERFKSSTNLFSFSQRHTNRAPPQYINGSLPTDFEGLQGRLDVCPHERLIDGTHANHI--RGLHPHLQKCMRNVKMRGCEAAYLKESLGGEHACPSPQRQLAEREDESAQLVAGTTSPL--ERRGAGS--------LVVHVRSGD 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0Z0_9PHAE4.660e-16395.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSV8_ECTSI1.470e-10594.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7B0_9PHAE3.720e-3237.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:657552..661167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size741
Hectar predicted targeting categorysignal peptide
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001600.1
Cds size741
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18873.1prot_Ecto-sp6_S_contig99.18873.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 657552..661167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350614.424533-CDS-Ecto-sp6_S_contig99:657551..6575991682350614.424533-CDS-Ecto-sp6_S_contig99:657551..657599Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 657552..657599 +
1682350614.4375782-CDS-Ecto-sp6_S_contig99:658049..6581181682350614.4375782-CDS-Ecto-sp6_S_contig99:658049..658118Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 658050..658118 +
1682350614.4473155-CDS-Ecto-sp6_S_contig99:659333..6594391682350614.4473155-CDS-Ecto-sp6_S_contig99:659333..659439Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 659334..659439 +
1682350614.4571512-CDS-Ecto-sp6_S_contig99:659744..6598151682350614.4571512-CDS-Ecto-sp6_S_contig99:659744..659815Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 659745..659815 +
1682350614.4670596-CDS-Ecto-sp6_S_contig99:660347..6605521682350614.4670596-CDS-Ecto-sp6_S_contig99:660347..660552Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 660348..660552 +
1682350614.4768531-CDS-Ecto-sp6_S_contig99:660925..6611671682350614.4768531-CDS-Ecto-sp6_S_contig99:660925..661167Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 660926..661167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18873.1

>prot_Ecto-sp6_S_contig99.18873.1 ID=prot_Ecto-sp6_S_contig99.18873.1|Name=mRNA_Ecto-sp6_S_contig99.18873.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=247bp
MGVSLLKLGVGLSVALGLGRAQPSGVKRASVERGGLVFQSDACPQAISKE
EAAALEADDSLPGGILSVGSLDAIGRSGNHYEVVTRVFSMSFCCQYKVVT
MPEQDTVLPTENGDRLELRHNTYSFSSADAALRTEHLGFGDISTDPEICP
PIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFC
SWKDEGEEERRSLLRATSAEEGEDKRNAGSSPRGKGQSLVVHMRSGD
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mRNA from alignment at Ecto-sp6_S_contig99:657552..661167+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18873.1 ID=mRNA_Ecto-sp6_S_contig99.18873.1|Name=mRNA_Ecto-sp6_S_contig99.18873.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3616bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:657552..661167+ (Ectocarpus species6 EcLAC_371)
ATGGGTGTCTCCTTGCTGAAGCTGGGTGTGGGACTCTCGGTGGCGTTGGT
GAGGTTTCGAGTGCCTCCATTTTTTTCAACAACGTTATCTACGACGGGTC
CCCACGACGACGGCAGTCATTCTCAATCATCACCATCCCCACAACACGCG
TCTGATGGACGCGGGACGAACAATATTTTGCTTACTGCAGTAGCACCTGA
GAGCCCCGTCCGGTGTGGGCCTCTGTGAGGCAACGAACATGGGTTGTACC
TCTCTCACTGAAATTGATATACTTCGAATTACATGCAGGTGGTTTTTCGT
AACGTACCACAATTAGTCGGTCACGATGTCTAGACTCTCCGCGCTGCTGT
TCCGCCGATGGAACAAGTATCGAAAAGTAATGTTCCGCAAATATTGTTCA
GTCCCTCGTATAGATGTCCCCGATCAACGTTGTACAACAGAAGTGGTGGT
GTGACCCAGCTGCCCGCGATGTCCTCTTCGTGTTCTATGGCGGCACAGGG
ACTCGGCCGCGCGCAGCCATCGGGAGTCAAGAGGGCCTCAGTCGAGCGTG
GCGGACTTGTGTTTCAGGTTTGTGTGTGTGTGTGACGGATTTTACGATTG
GAGTTTCCCTCACCCACACTACACAGATTCTCTTCCACTCGGGGAGAGGT
AGTTGAAAACCGGTTTTATCCAGCATCGCTTTCAATCACACACAAGGACG
TCTGAAGTCTAAATGTAATTTCTATGGGGAACTTCTAAAGAAAAACATTC
GCCACATTCCCGATCGATTTGGTTTTTCTGCAACGCGGTTCAGTAATCGA
TTCCGCTTGGCCGAGTTCGGAGGGGTAGGACCAATCGGAAAGTTATTTAC
CCCCAGACCAAAACACAGGTGCGCCAGATCAAATTTACAAACGACATTGT
GGTAAAATTCTTCAGGAATACGCCACTTTGTCACGCTTGTTTCTTAAAAG
ACATTCAAACTGGGCCATTCTGATGCAAGATTAATGATCCCCACCCCAAA
CTCACCCGCTGAGATTTACAGCCAAAAGCAGGCCTTGCGGAGGTTGTGAC
GGGAGGGGATGCTGGTTTTCCATTCCGCATGTTGGCATTTTGGGATAGCT
GTAACTCGGTACTCGGTACCATCAATCACTTGGGAAAAGTGCGAATGGCT
TAATCTATTTTCTGGTGCTTCCACTTCCAGAGACAAAAATCAGCAATCTG
TAACTGCCCCGAGGGTGCTTGACCAATTTAACACAACGTGCGATTATCCC
GTTTGTGCGGAGTGAGGGTTCTCGACCCCGCACAACATAATCTACTCGAA
CACCACTGTGGTAAACGCAAAAAAATACCGAAGGCAGTAAGTAAAGCGGT
AACCTGGTGGTCGAGCTCAAGGAGTGATCGGTTTGTTGTACAACGTGGTT
GCCAAGCGACGAAAATCCAACTCCGATGGCAGATACCACATGGGCGGGGG
GGTCGTGCCATCCCCGCTTTCTGATGCTTCAAAGTGTTCTCTAGAGGCGA
CAGCAAACTTCGTTAAAACTCAGCACTAGCAACGAGTGTTTCCCTCCATA
CCTCTAGGGGCTGTCGGATACAACACGATCAGACCTCGCCCGGGGATGGT
TTATCACCGTCCCCCCCCCACAAGAATTCCATGACCATCATTTCTGGATG
GCGCCTTAGACTATGTAAGCATAAACCTGTTGAGACCAATAGCCGAGGAG
ACCAATCTATAATCATTTTGCATGCTGTTTTTCTTGCGCTTGCATGCAAT
TCCTACGACACCACACTACATCCATCCTGAAGAGCGACGCCTGTCCCCAA
GCGATATCTAAGGAGGAGGCTGCTGCGTTAGAGGCGGACGATTCCTTGCC
GGGCGGTATTTTGTCCGTAGGCTCTCTCGACGCGATAGGTAAGCAAGGGA
CGATTTCTGCGCTGCCAGTTCCTCCGAGACGTTGGGCAGCGGAGCTGGTT
CCTAAGTAGCCCGTTGGCATGTTGTCGGGAGCCCACCATGCCGTAAATGC
CGACAATCGGTGTGTGGCGGGCGTGTGCATACGGCGGTTATGGTCGCGGC
TTAGTTGAGAGGTTGATCGAACGTGATGGCGAGGGTCCGACCTTGTTCAT
TGAAGAAGCCCAGTGTTGGAACATTCAGGGCAACTCTTGCGGTCGTAATG
TTTTCCCTCCTCTGTTGTTACCTGCACTCGTTCGTCTCACCAGGACGCAG
CGGAAACCACTATGAGGTGGTAACAAGGGTCTTTTCGATGTCATTCTGCT
GCCAGTACAAAGTGGTGAGTGGCTTTAACCTCTGGTGCATGTGCGGGATG
TGAGAGTGTGGGGAAGAGTATCTCTCTTGCTTCGAGATTAAAGTCGTCGG
TCATTGTTACGCTCCGATGTTGAACTTTTGAGTGTGCGGCCAGAAAGGTT
CTGTAGTTCCAAATTGCCGAGTTATTTTGAATGGGTAGTTCTTCTGTCGT
GTTTTGTTTTCTCTACACGCTTTTGAACAGTTGTCGCGCTTTGCTAGCTA
CCCCCGGCCAGATGTGAATGTCACCTTAGCGTACCAGCACCGAATGGACA
GAATGCCGATCCGTACTTTCTGGACAAAAGCTGATTTCATATCAAGCGTT
GGTCTGAAAAAGGTTCATTGCCGCACACTCTCCCGTTTGTTGTATTGATA
TTCTCGGTGGAAACTCTCCCAGAGGTATCTATCGTGGCAAGAGCATGCTC
CATTGAGTACCGAAAGTTTTGTATGATGCCCTACCCTCCCCTCAAGCACC
TTCAAGGCGTGATGATATGTTCCCCTCCCACGACTTGCAAACCCAGGTGA
CGATGCCCGAACAGGACACCGTACTCCCCACGGAGAACGGGGATAGGTTG
GAGCTGAGGCACAACACGTACAGTTTTTCTTCCGCCGATGCTGCCCTCCG
CACCGAGCACCTAGGATTCGGAGATATCTCGACGGACCCCGAGATATGCC
CACCGATCAAGCATCTCTCTGGACAAAAGACAAAGGAGTTCACCCGCGAA
GGTGAGAAACGTTTACGGTACACACCGGTTAGCCTTCGCTGAACCTGTTA
CGAACCCCAGCATGGAGAGAAACATGAGAAGGTTCGTCGAGGCTGTACTA
ACTTGGAACACTTTTTTTCGGCCTGTAAATGGTTCGATTCGGGCGACAAG
CAATCTCGGCGCAGGCTCAAGGGTTCTAATGCTCCCCCTTTTCAAGGAAA
AATATGAGCTGTCTGTGGGGTGTCTGAACCATGTTTCATTGCCCAGCTTG
TCCGCGAAACCTGCTTGTACAAGACCCAAGCCGAGTCGTTCCGCGTTACC
GATTGGTTTCGGATCCTCTCGGCGCTCTTATCCCGGATTTTGGCTCTATG
TCCGGCCTTCCTTGCCGTTTGCAGGAGTTCACGAGAGGCTCCTCCAGTGC
ATGCTGCGTGTTGAGATGATCGGGTGCGTAGCGCACTTTCTCCACGACGT
CGTGGGCGCCGACGACGCTTTCTGCAGCTGGAAAGATGAGGGCGAGGAGG
AACGCCGGTCACTGTTGCGAGCCACGTCGGCGGAGGAGGGCGAGGACAAG
CGCAACGCCGGGAGTTCCCCCCGGGGTAAAGGCCAGTCTCTGGTCGTGCA
CATGCGCTCCGGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:657552..661167+

>mRNA_Ecto-sp6_S_contig99.18873.1 ID=mRNA_Ecto-sp6_S_contig99.18873.1|Name=mRNA_Ecto-sp6_S_contig99.18873.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:657552..661167+ (Ectocarpus species6 EcLAC_371)
ATGGGTGTCTCCTTGCTGAAGCTGGGTGTGGGACTCTCGGTGGCGTTGGG
ACTCGGCCGCGCGCAGCCATCGGGAGTCAAGAGGGCCTCAGTCGAGCGTG
GCGGACTTGTGTTTCAGAGCGACGCCTGTCCCCAAGCGATATCTAAGGAG
GAGGCTGCTGCGTTAGAGGCGGACGATTCCTTGCCGGGCGGTATTTTGTC
CGTAGGCTCTCTCGACGCGATAGGACGCAGCGGAAACCACTATGAGGTGG
TAACAAGGGTCTTTTCGATGTCATTCTGCTGCCAGTACAAAGTGGTGACG
ATGCCCGAACAGGACACCGTACTCCCCACGGAGAACGGGGATAGGTTGGA
GCTGAGGCACAACACGTACAGTTTTTCTTCCGCCGATGCTGCCCTCCGCA
CCGAGCACCTAGGATTCGGAGATATCTCGACGGACCCCGAGATATGCCCA
CCGATCAAGCATCTCTCTGGACAAAAGACAAAGGAGTTCACCCGCGAAGG
AGTTCACGAGAGGCTCCTCCAGTGCATGCTGCGTGTTGAGATGATCGGGT
GCGTAGCGCACTTTCTCCACGACGTCGTGGGCGCCGACGACGCTTTCTGC
AGCTGGAAAGATGAGGGCGAGGAGGAACGCCGGTCACTGTTGCGAGCCAC
GTCGGCGGAGGAGGGCGAGGACAAGCGCAACGCCGGGAGTTCCCCCCGGG
GTAAAGGCCAGTCTCTGGTCGTGCACATGCGCTCCGGGGAC
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