mRNA_Ecto-sp6_S_contig99.18871.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18871.1
Unique NamemRNA_Ecto-sp6_S_contig99.18871.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18871.1 vs. uniprot
Match: D8LSW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW2_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.010e-47
Identity = 81/96 (84.38%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 MASVRQAGRTSQGQASGGGQRPTAXXXXXXXXRQHVEEGGNVAHQPGNRMASAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHE 288
            M SVRQA +TSQGQASGGGQRPTA         QHVEEGGNVAHQ GN MA AMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHE
Sbjct:    1 MGSVRQADQTSQGQASGGGQRPTASSREQQQS-QHVEEGGNVAHQSGNLMAEAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHE 95
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BLAST of mRNA_Ecto-sp6_S_contig99.18871.1 vs. uniprot
Match: A0A6H5JGA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA2_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.030e-41
Identity = 76/97 (78.35%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 MASVRQAGRTSQGQAS-GGGQRPTAXXXXXXXXRQHVEEGGNVAHQPGNRMASAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHE 288
            MASVRQA   SQGQ S GGGQ PTA         +HVEEGG+VAHQPGNRMA AM+RGGILGWGSYLTFAWAGPFLKLGST+TLKEEHLEGIY KHE
Sbjct:    1 MASVRQADEASQGQTSIGGGQGPTASPGEQQQ-HEHVEEGGDVAHQPGNRMAEAMQRGGILGWGSYLTFAWAGPFLKLGSTITLKEEHLEGIYHKHE 96
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BLAST of mRNA_Ecto-sp6_S_contig99.18871.1 vs. uniprot
Match: A0A6H5JHZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ3_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.660e-37
Identity = 71/97 (73.20%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 MASVRQAGRTSQGQASGGGQRPTAXXXXXXXXRQHVEEGGNVAHQ-PGNRMASAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHE 288
            MASV QA +TSQGQAS  G +           RQH E+G NVAHQ P NRMA+AMKRGGI+GWGSYLTFAWAG FLKLGSTVTLKEEHLEGIYDKHE
Sbjct:    1 MASVCQADKTSQGQASVRGGQDATASSREQQQRQHAEDGENVAHQQPDNRMAAAMKRGGIMGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 97
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BLAST of mRNA_Ecto-sp6_S_contig99.18871.1 vs. uniprot
Match: A0A6H5K598_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K598_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.350e-30
Identity = 50/60 (83.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:  136 PGNRMASAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHERWEAGPNML 315
            P       MKRGGI+GWGSYLTFAWAG FLKLGSTVTLKEEHLEGIYDKHERWE GPNML
Sbjct:   12 PATAWRRPMKRGGIIGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHERWEEGPNML 71
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BLAST of mRNA_Ecto-sp6_S_contig99.18871.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.440e-20
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:  148 MASAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHE 288
            MA A++RGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIY KHE
Sbjct:    1 MAEALQRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYHKHE 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSW2_ECTSI1.010e-4784.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGA2_9PHAE1.030e-4178.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHZ3_9PHAE1.660e-3773.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K598_9PHAE7.350e-3083.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSW6_ECTSI1.440e-2091.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:608581..608898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score95.1
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D8LSW6
Model size318
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
Cds size318
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350614.2086995-CDS-Ecto-sp6_S_contig99:608580..6088981682350614.2086995-CDS-Ecto-sp6_S_contig99:608580..608898Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 608581..608898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18871.1prot_Ecto-sp6_S_contig99.18871.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 608581..608898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18871.1

>prot_Ecto-sp6_S_contig99.18871.1 ID=prot_Ecto-sp6_S_contig99.18871.1|Name=mRNA_Ecto-sp6_S_contig99.18871.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=106bp
MASVRQAGRTSQGQASGGGQRPTASSGEQQQQRQHVEEGGNVAHQPGNRM
ASAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHERWEA
GPNML*
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mRNA from alignment at Ecto-sp6_S_contig99:608581..608898-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18871.1 ID=mRNA_Ecto-sp6_S_contig99.18871.1|Name=mRNA_Ecto-sp6_S_contig99.18871.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=318bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:608581..608898- (Ectocarpus species6 EcLAC_371)
ATGGCTTCTGTGCGTCAAGCCGGCCGGACCAGTCAAGGCCAAGCAAGCGG
AGGTGGCCAGCGCCCGACTGCTTCATCCGGGGAACAGCAGCAGCAACGCC
AGCATGTTGAAGAGGGCGGAAATGTGGCCCATCAACCGGGCAACCGCATG
GCGTCCGCCATGAAGAGAGGAGGAATCTTGGGTTGGGGATCCTACTTGAC
GTTCGCCTGGGCAGGGCCTTTCCTCAAGCTCGGCTCCACTGTCACCCTCA
AGGAGGAGCACCTTGAAGGAATCTACGACAAGCACGAGAGGTGGGAAGCG
GGACCAAACATGCTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:608581..608898-

>mRNA_Ecto-sp6_S_contig99.18871.1 ID=mRNA_Ecto-sp6_S_contig99.18871.1|Name=mRNA_Ecto-sp6_S_contig99.18871.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:608581..608898- (Ectocarpus species6 EcLAC_371)
ATGGCTTCTGTGCGTCAAGCCGGCCGGACCAGTCAAGGCCAAGCAAGCGG
AGGTGGCCAGCGCCCGACTGCTTCATCCGGGGAACAGCAGCAGCAACGCC
AGCATGTTGAAGAGGGCGGAAATGTGGCCCATCAACCGGGCAACCGCATG
GCGTCCGCCATGAAGAGAGGAGGAATCTTGGGTTGGGGATCCTACTTGAC
GTTCGCCTGGGCAGGGCCTTTCCTCAAGCTCGGCTCCACTGTCACCCTCA
AGGAGGAGCACCTTGAAGGAATCTACGACAAGCACGAGAGGTGGGAAGCG
GGACCAAACATGCTTTAA
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