mRNA_Ecto-sp6_S_contig99.18864.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18864.1
Unique NamemRNA_Ecto-sp6_S_contig99.18864.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18864.1 vs. uniprot
Match: A0A6H5JIA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA6_9PHAE)

HSP 1 Score: 508 bits (1308), Expect = 2.300e-172
Identity = 281/294 (95.58%), Postives = 284/294 (96.60%), Query Frame = 2 
Query:  272 CSKAPRSSSGSSNPLLSSMRPRVPHLFDSAASSSLAASPATGDTTAPAPKADQNPPQSGATGEGRGFGSKPAGQEQQQQXXXXXXXXXXXXX--PQPKAPPRGDNLLVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVKDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFNSAR 1147
            CSKAPRSS  SSNPLLSSMRPRVPHL DSAASSSLAASPATGDT APAPKADQNPPQ+GATGEGRGFGSKPAGQ+ Q  XXXXXXXXXXXXX  PQPKAPPRGDNLLVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVK KSVGILRPITYMNNSG+SARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFNSAR
Sbjct:   71 CSKAPRSSGRSSNPLLSSMRPRVPHLLDSAASSSLAASPATGDTAAPAPKADQNPPQAGATGEGRGFGSKPAGQQSQXXXXXXXXXXXXXXXXXPQPKAPPRGDNLLVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVKHKSVGILRPITYMNNSGISARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFNSAR 364
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18864.1 vs. uniprot
Match: D8LSW9_ECTSI (Peptidyl-tRNA hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW9_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 5.230e-111
Identity = 173/175 (98.86%), Postives = 174/175 (99.43%), Query Frame = 2 
Query:  623 MTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVKDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFNSAR 1147
            MTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRV DKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHW+EEEDMAKVMTRFNSAR
Sbjct:    1 MTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVNDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWVEEEDMAKVMTRFNSAR 175
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18864.1 vs. uniprot
Match: A0A4D9CWV7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV7_9STRA)

HSP 1 Score: 229 bits (584), Expect = 3.660e-60
Identity = 111/194 (57.22%), Postives = 150/194 (77.32%), Query Frame = 2 
Query:  566 PRGDNLLVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVKDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFNSAR 1147
            PR  NLL+VGLGNPG +Y MTRHNAGFL  + LARR G   ++++AFQGEY  V  K KSVG+L+P T+MN SG S RKV+D+FKLP+++ +V+VDEVALD GQ+RL+  G AGGHNGLKS+++ LK  +Y RLRIGVG +    ++ DHVLG+F+R+E+K LD+++ DA +A+E WIE+++  KVM R N+ R
Sbjct:  742 PRSKNLLIVGLGNPGKEYAMTRHNAGFLAVDLLARRLGADFRLRSAFQGEYGCVAYKGKSVGLLKPTTFMNRSGQSLRKVLDYFKLPVSSVLVVVDEVALDIGQIRLRQTGSAGGHNGLKSIESCLKCKDYNRLRIGVGGAA-PGSMVDHVLGQFSRSERKVLDDMLIDAVEAIEDWIEDDNTDKVMNRVNAPR 934
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18864.1 vs. uniprot
Match: A0A836CKJ3_9STRA (Peptidyl-tRNA hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKJ3_9STRA)

HSP 1 Score: 210 bits (534), Expect = 3.690e-60
Identity = 109/172 (63.37%), Postives = 131/172 (76.16%), Query Frame = 2 
Query:  623 MTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVKDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFN 1138
            MTRHN GFLVA+EL+RR G  LK ++ FQG Y S +VK KSVG+L+P T+MNNSG +ARKV DFFKL  +  +VL D+VALDFG LRL+ KG AGGHNGLKSLQ HL T +Y RLRIGVGA +  + L  HVLGEF++ E+KELD V++DA   VEHWI E+D A VMT  N
Sbjct:    1 MTRHNIGFLVADELSRRWGCALKTQSKFQGLYGSAQVKGKSVGVLKPSTFMNNSGQAARKVTDFFKLNADHVLVLTDDVALDFGALRLRMKGSAGGHNGLKSLQQHLGTQDYARLRIGVGAPR--KDLVSHVLGEFSKVERKELDMVVSDAASVVEHWIAEDDAALVMTAIN 170
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18864.1 vs. uniprot
Match: A0A429XTI9_9BACI (Peptidyl-tRNA hydrolase n=1 Tax=Siminovitchia acidinfaciens TaxID=2321395 RepID=A0A429XTI9_9BACI)

HSP 1 Score: 177 bits (450), Expect = 4.940e-48
Identity = 91/186 (48.92%), Postives = 126/186 (67.74%), Query Frame = 2 
Query:  584 LVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVKDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFNS 1141
            L+VGLGNPG +Y+ TRHN GF V EELA R G TL  ++ F G Y +VR   K V +L+P+TYMN SG S R +MD+F++P+   +V+ D++ L  G++RL+ KG AGGHNG+KS   HL TPE+ R+RIG+        + D+VLG+F+R E +E+ +VI    DA E W+E   + +VM RFNS
Sbjct:    3 LIVGLGNPGSRYEKTRHNIGFEVIEELANRSGTTLN-ESKFNGLYANVRNNGKKVILLKPLTYMNLSGESIRPLMDYFRIPIENVLVIYDDLDLPVGKIRLRQKGSAGGHNGIKSTIQHLGTPEFNRIRIGINRPPGDMKVPDYVLGKFSREEWEEMQSVIQTCADACEEWMEAPFL-EVMNRFNS 186
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18864.1 vs. uniprot
Match: A0A7S3ACE0_9RHOD (Peptidyl-tRNA hydrolase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ACE0_9RHOD)

HSP 1 Score: 178 bits (451), Expect = 1.120e-47
Identity = 77/186 (41.40%), Postives = 133/186 (71.51%), Query Frame = 2 
Query:  569 RGDNLLVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVKDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVM 1126
            RG  L V+GLGNPG++++ TRHN GF + E  A+RHGG +K+   +  E C +++++K+V +++P+T+MN SG S RK++DF+KLP +A +++ D++ L+ G++RL+ KG +GGHNGLK ++  L T  Y RL++GVG    ++ L D+VLG+F R+E   +D+++    + ++ W++  D++KV+
Sbjct:   32 RGSRLAVIGLGNPGNEFRSTRHNVGFDIIEAFAQRHGGNMKMAQKYLAEMCEIKLENKTVMLVKPMTFMNLSGTSVRKIVDFYKLPHDAILIVADDIYLELGRVRLRAKGSSGGHNGLKHIEKSLGTQIYPRLKVGVGGPNKAD-LKDYVLGKFKRSEVDAVDDMLWTCVELIDEWVKNADLSKVV 216
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18864.1 vs. uniprot
Match: A0A7S0ZE14_9RHOD (Peptidyl-tRNA hydrolase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE14_9RHOD)

HSP 1 Score: 175 bits (443), Expect = 1.110e-45
Identity = 90/192 (46.88%), Postives = 125/192 (65.10%), Query Frame = 2 
Query:  566 PRGDNLLVVGLGNPGDKYKMTRHNAGFLVAEELARR-HGGTLKIKTAFQGEYCSVRVKDKS---VGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMT 1129
            PRG  LLVVGLGNPG +Y+MTRHN GF   +  A R +    K+++ +      V + D     V +++P TYMN SG S +    F K+P +A +V+VDEV +DFG++RL+ KG AGGHNGLKS+Q  L T EY RLRIG+G     E L++ VL +FTR+E+K++ NV  D  D +E W+  E+ ++VMT
Sbjct:   95 PRGSKLLVVGLGNPGKEYEMTRHNVGFQFLDIWAARLNASKFKVESKYSALISEVNLNDSKNTQVFLMKPSTYMNLSGQSVKAFCKFHKIPSSAVLVVVDEVNVDFGKVRLREKGSAGGHNGLKSIQQSLGTQEYPRLRIGLGRPNHREDLANFVLAKFTRSEQKDIQNVYIDCMDILEEWVRNENFSQVMT 286
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18864.1 vs. uniprot
Match: A0A2A4YKD0_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A2A4YKD0_9BACT)

HSP 1 Score: 169 bits (428), Expect = 1.030e-44
Identity = 85/172 (49.42%), Postives = 113/172 (65.70%), Query Frame = 2 
Query:  584 LVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVKDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWI 1099
            L+VGLGNPG KY+MTRHN GFLV E+LA R G TL    AF G +    ++ K V  L P T+MN SG + R+ +D++ L     +++ D+VAL FG+LR++ KG AGGHNGLK ++ HL T EY RLR+GVG S   E L ++V+G F   EKK L  +  DA  A+E W+
Sbjct:    7 LIVGLGNPGKKYEMTRHNMGFLVVEKLAERLGATLSPNKAFMGRFGKASIEGKKVYFLLPSTFMNLSGQAVRRCIDYYNLTKERLLIVSDDVALPFGKLRIREKGSAGGHNGLKDVERHLGTQEYQRLRVGVG-SNGDEDLDEYVVGNFNSHEKKLLPEIQIDAALALEEWV 177
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18864.1 vs. uniprot
Match: A0A2V3IG78_9FLOR (Peptidyl-tRNA hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG78_9FLOR)

HSP 1 Score: 171 bits (434), Expect = 1.070e-44
Identity = 86/200 (43.00%), Postives = 132/200 (66.00%), Query Frame = 2 
Query:  554 PKAPPRGDNLLVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGT-LKIKTAFQGEYCSVRVKDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGA-SKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFNSAR 1147
            P  P RG+ LLVVGLGNPG ++  TRHN GF + ++ A RH  +  + +++ QG+     + D+SV +L+P T+MN SG + R  + +   P+ A +V+ D+++LD G +RL+ KG AGGHNGLKS+Q  +    Y RLRIGVG+ S+ +E  +D VLG F+R+EK+ LD V  D  +A+++W++E  + KV T+   A+
Sbjct:   67 PPPPERGNKLLVVGLGNPGPRFDNTRHNVGFTLLDQYAARHSASKFRRESSVQGDVARFHLHDRSVMLLKPSTFMNASGRAVRAALKYIDAPVAALLVVTDDISLDLGDIRLRAKGSAGGHNGLKSIQQCVGGMNYARLRIGVGSPSRGAEDWADFVLGSFSRSEKQVLDKVEWDVMEAIDYWVDEASIEKVQTQIALAK 266
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18864.1 vs. uniprot
Match: A0A2E3LYL0_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Waddliaceae bacterium TaxID=2026802 RepID=A0A2E3LYL0_9BACT)

HSP 1 Score: 168 bits (426), Expect = 2.410e-44
Identity = 84/185 (45.41%), Postives = 120/185 (64.86%), Query Frame = 2 
Query:  584 LVVGLGNPGDKYKMTRHNAGFLVAEELARRHGGTLKIKTAFQGEYCSVRVKDKSVGILRPITYMNNSGMSARKVMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFN 1138
            L++GLGNPG+KY  TRHNAG+L  + LA  HG T K    F G+    ++   ++ ++ P TYMN SG S RK +DFFKL +   +V++D++ L FG LRL+ +GG GGHNGLKS+QAHL +  Y RLR+G+G  K  + L+ HVLG F+R E +EL   +  A   +E  ++ E +++VM   N
Sbjct:    9 LLLGLGNPGEKYAQTRHNAGYLALQRLAEVHGWTFKQDKRFLGQVAKGQIDGVTIYLVLPETYMNESGRSLRKALDFFKLSVEEVLVVLDDIHLPFGTLRLRKQGGTGGHNGLKSIQAHLGSDAYLRLRVGIGQQK-GDDLTKHVLGRFSREESEELGLSLDRAAKLIERIVQGEPLSQVMNEVN 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIA6_9PHAE2.300e-17295.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSW9_ECTSI5.230e-11198.86Peptidyl-tRNA hydrolase n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CWV7_9STRA3.660e-6057.22Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836CKJ3_9STRA3.690e-6063.37Peptidyl-tRNA hydrolase n=1 Tax=Tribonema minus Ta... [more]
A0A429XTI9_9BACI4.940e-4848.92Peptidyl-tRNA hydrolase n=1 Tax=Siminovitchia acid... [more]
A0A7S3ACE0_9RHOD1.120e-4741.40Peptidyl-tRNA hydrolase n=2 Tax=Rhodosorus marinus... [more]
A0A7S0ZE14_9RHOD1.110e-4546.88Peptidyl-tRNA hydrolase n=1 Tax=Timspurckia oligop... [more]
A0A2A4YKD0_9BACT1.030e-4449.42Peptidyl-tRNA hydrolase n=1 Tax=Candidatus Aeropho... [more]
A0A2V3IG78_9FLOR1.070e-4443.00Peptidyl-tRNA hydrolase n=1 Tax=Gracilariopsis cho... [more]
A0A2E3LYL0_9BACT2.410e-4445.41Peptidyl-tRNA hydrolase n=1 Tax=Waddliaceae bacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:492707..497057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score345.9
Seed ortholog evalue2.3e-92
Seed eggNOG ortholog2880.D8LSW9
Model size2270
KEGG koko:K01056
Hectar predicted targeting categorychloroplast
Exons4
EggNOG free text desc.aminoacyl-tRNA hydrolase activity
EggNOG OGsCOG0193@1,KOG2255@2759
EC3.1.1.29
Cds size1089
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18864.1prot_Ecto-sp6_S_contig99.18864.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 492768..495937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350612.9479785-UTR-Ecto-sp6_S_contig99:492706..4927671682350612.9479785-UTR-Ecto-sp6_S_contig99:492706..492767Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 492707..492767 +
1682350612.9976974-UTR-Ecto-sp6_S_contig99:495937..4970571682350612.9976974-UTR-Ecto-sp6_S_contig99:495937..497057Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 495938..497057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350612.9589243-CDS-Ecto-sp6_S_contig99:492767..4934151682350612.9589243-CDS-Ecto-sp6_S_contig99:492767..493415Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 492768..493415 +
1682350612.968614-CDS-Ecto-sp6_S_contig99:494226..4943191682350612.968614-CDS-Ecto-sp6_S_contig99:494226..494319Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 494227..494319 +
1682350612.9784317-CDS-Ecto-sp6_S_contig99:495018..4951991682350612.9784317-CDS-Ecto-sp6_S_contig99:495018..495199Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 495019..495199 +
1682350612.9879112-CDS-Ecto-sp6_S_contig99:495770..4959371682350612.9879112-CDS-Ecto-sp6_S_contig99:495770..495937Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 495771..495937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18864.1

>prot_Ecto-sp6_S_contig99.18864.1 ID=prot_Ecto-sp6_S_contig99.18864.1|Name=mRNA_Ecto-sp6_S_contig99.18864.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=363bp
MLMHARRFWRNSLLSLMSSACLVRPPPSAQAFLLTSIASTARTSTTARLA
NAIIMGKQQVATTTTSSRRMCSKAPRSSSGSSNPLLSSMRPRVPHLFDSA
ASSSLAASPATGDTTAPAPKADQNPPQSGATGEGRGFGSKPAGQEQQQQQ
EQQHRRPKQQRRPQPKAPPRGDNLLVVGLGNPGDKYKMTRHNAGFLVAEE
LARRHGGTLKIKTAFQGEYCSVRVKDKSVGILRPITYMNNSGMSARKVMD
FFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYT
RLRIGVGASKFSEALSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEED
MAKVMTRFNSAR*
back to top

mRNA from alignment at Ecto-sp6_S_contig99:492707..497057+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18864.1 ID=mRNA_Ecto-sp6_S_contig99.18864.1|Name=mRNA_Ecto-sp6_S_contig99.18864.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4351bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:492707..497057+ (Ectocarpus species6 EcLAC_371)
GTCGTGTCGGCGGTTCAGCAGCAGCAGCAGCAGCAGTCGGGAAAGCAGCA
GTAGAGGGATCATGCTGATGCATGCGCGGCGGTTCTGGCGCAACTCGCTC
TTGTCGTTGATGTCGTCGGCCTGCCTTGTGCGCCCCCCGCCGTCTGCGCA
AGCGTTCCTGCTGACCAGCATAGCATCGACGGCACGCACGTCAACAACGG
CAAGACTGGCGAACGCCATCATCATGGGGAAGCAGCAGGTCGCAACCACC
ACCACTTCATCACGACGAATGTGCAGCAAGGCCCCGCGCTCTTCTAGCGG
CAGCAGCAACCCGCTGCTCTCCTCGATGAGACCCCGAGTCCCCCACCTCT
TCGATTCCGCCGCGTCTTCCAGCCTGGCCGCTTCGCCTGCCACCGGGGAC
ACAACCGCTCCTGCGCCCAAGGCTGACCAGAACCCACCGCAATCGGGAGC
AACCGGCGAGGGCCGAGGGTTCGGAAGCAAGCCTGCCGGACAGGAGCAGC
AGCAGCAGCAGGAGCAGCAGCACCGGCGGCCGAAACAGCAGCGACGGCCG
CAGCCGAAGGCGCCCCCGCGGGGGGACAACCTGCTGGTGGTGGGTCTCGG
TAACCCGGGCGACAAGTACAAGATGACCAGGCACAATGCCGGGTTCCTGG
TGGCCGAGGAGCTGGCGAGGCGGCATGGGGGCACGCTCAAGATCAAGACC
GCATTCCAGGTGAATGGTCTCGCGTTGTTCTCCGAATGTCCTTTGCCTTT
CCAGCGGAGACGAGACTAACATGCACAAACATGCACACCGCTGGGTGCAT
GGCAGGCGACCCAATCCCACACCCATGCGGGTCCCTGCCGTCACTTTGCC
TGCTACTGCTGTAGAGCGATCCCGATAGAGTATGCTGAAATACAGCAGTG
TTGTGTCTCACGGTAAATGGCACTCCAACCTTTTTGCCGAGGGAGTCGCA
AGCAAGCGTAGGTTTGCACGCCCTCTCGCTGGGCTGGATGGTCCATCGTC
TGTGATGGGGTCACGCGAGCCTGGCTGACCACACTCAAAGGCTGCGGCCG
TTTAGCACCGCTTTGCCGCGCCACAAACGACAAGGCCGAACGTATCGTGT
GTGTGGCACCAGCTGATGGATTCGTTTTGCAATCGAGCCGCAGAATGCTT
GAGCCGGACACCCGCATTGCTAGACACCCTGCCCTACAAAGGCGCGCTGA
AATAGAAGCCACAATCGAATGCTGGTATATACATAAATTAGCACTGCCAT
TTCGCTGGACGACCCTGGATATCGAGTTTCCTTCCTTGACTATTTCTCGG
ACGTCGTCCTCTGCGTCGACTTAGACCAGCAGAACCTCAAATGCTGTACT
GCCAGATTGACCGGAGGGCCAGCGGTACTCTCTGGCATCGTGTTGACACC
CATCCCGTTGCTTGCATCTTGCCCGAGGAACTGTCGTCCAAACCACCCCT
CATCTTTGCGGTGACCCGCCGTATCCGTTTGGCGCCGGGCTCGACTGCAT
GTTTTCTCGGACGCGTTCAGGGCGAGTATTGCTCGGTGAGAGTGAAAGAC
AAGTCCGTGGGGATCCTGCGACCCATCACGTACATGAACAACAGCGGCAT
GTCTGCCCGAAAGGTGAAAGGGGACGGGAGCGCAAGAAGACGCACGATGC
TATGTATCATGGTTTACGACGCTTTTGTTGGAAGTTGTTCCGCCGTCCTA
CCTCAACGAGCACCGGGTACTCCTGAAACGTGTTTGGGTTTGTTTAACGT
GTTGCTTTGTGGGAAGAACGCGAGGGCCTCTTCATTGTTCAGACAGACAG
TTGCTCTTCCTCTCTCAGCAGAAACAGGTCAATTGCTGTCCGAACGTGCC
TTGCACCAACCTCTTCGCGTACACTTTCTCGAAGGAGGCGTATGTATGTA
CGACTTTTCTGCATTTGGCGTGTACACTTTCGCGGTGCCAGCGTGGCATG
GTTATCGTTGCCGTCGCACCTTGCACGAAATATTCCCAATGGTTGCTTAT
GAGACGAGTCGCCTTTACGCCCTCGTTTTGCCCCCCACCCCCCACACCGA
AAACGGTAGCTGTGCTGGGGCACAGGAAGTGAGTTAAAAAATCTGTTGGT
GATGTCGATAGGATAGATGGGCTCCGTAGGGAAATCATTTTTGAGCAACC
GTTGGCAAGTAGGAAGGAACGATTGGCCAAAGATGATCGGTCCTGTGTTA
ACAATGCTCCTCTCTCTCTCTCGAGGGCGCGTGATCAATGGTCTAAACGC
TAAGGCATGCAAAAGATAAGAGTACGCCCCGCCCCCCCTCCCTCCTCATG
GCCGTCGCCCAGGTGATGGACTTCTTCAAGCTCCCCATGAACGCGGCCAT
AGTCCTGGTGGACGAGGTAGCGCTAGACTTTGGCCAGCTCCGGCTCAAGG
GAAAGGGGGGTGCGGGGGGGCACAACGGGCTCAAGAGCTTGCAGGCACAT
CTCAAGACTCCGGAGTACACCCGACTTAGGATCGGCGTAGGAGGTGTGTG
GGTACGCATGTCTACCATGCGCATGCCGCAGGTGACACAAGATACCACAC
CCCCTGAACCGATTTCCAAAGCTCGACTTCTCCACGACGAAGAGGATGCA
AAACTCAATTGATGCGTTTTCAGAAAGATGTCGACGTGATGGTTCCAACG
ACGACATTTTCGGCACGACCTATCTTTCTCGAGCTTAGAAATCGGGCCAG
GCCGGGGTGTGTGGTATCTTGAGTCACCCGCGGTATCTACGAGGAGCTGA
GATCGCGTTTGTGTCGAAGGTGCTAGTGGGTGGCTCGTGAAAACGCGCGC
ACGGGTATCTCTCCGGTGTCTTGTTACCGCTGTGCATGTTTTTTTTTTCG
TACTTACTGCGCGCATCGTGACCATGGCCGAAAAACTCTTAACCCTCTGG
CTCGTTCAACCCGTGCTCGAAAGAGGGATGGTTTGACCACTGCAGTAAGC
CACGAATGCTGCTGAGGTAAGGAGCGATCCGGTGCGTGTCTGCTTTCGCT
TCGCTTGTTTACACACGGCCCCGCCCCACTTGTGCGCGGCTCCACCTTCA
CTTTTTGCCGACAGCGTCCAAGTTTTCGGAGGCCTTGTCGGACCACGTTC
TTGGAGAGTTCACGAGAACAGAAAAGAAGGAGCTCGACAACGTTATCGCC
GACGCGTGCGACGCGGTGGAGCACTGGATAGAGGAGGAGGACATGGCTAA
GGTCATGACGCGGTTCAACTCGGCGCGATGACATTCGGCGGCGGCGGCGG
CGGTGGCAGCGGTTTGCGTGGCCGAGGAAATCACACCAACAGCCCCAAGC
AATGATCCCGTGGTTACGGAAAGGCGGGAATGTAAATATTTGCTTTACGC
GTTGTGCAACCGCCTTTTATACTACGTTGAGGAGCGGAGAGGATTCCCCA
CAACCTTCAAAACCACGACAAGTGTGTGTCACCATCGAGGGCGTTCTGCG
TTAGAGGACCGCCGTAGCTTGACTTGGTGCAAATGGACAAGCCCCGCAGC
TCCTTGCTAGAATTGCCAGTCACTTTCGACCAAGGGTCGCGGTCAAGACA
CGGCCACGGCGTTGGTGTGTCCCCCTTCTCTGCTAGTCGTGAGATTTGAA
AACAGAGTAAACACCGGGATGACACCGACCATGTTGTGTGTCGTTCTGCC
CCAAAGGGTCGCGGGGCGTCTTCCATCGTGTCGACGAGCGGCGGGCGGGC
GTTCGGCTCGGTGGGCAGGCGGCGAATCCGCACTCAGGTGCTGAGCTGCT
GTAAGCGAAGCATCTCGTGGTGGTCACGACGCGCGATCACCCAGGAAGAC
ACCTCAGAACGAGCGTGAATGTAGCAGAGGGCACCACGTACGACCTCTCT
TTCTTGCCTGAAGCAAAGAGCTGTGGGGGAACGGCAACGTTCGACCTCTC
TTTCTTGCCTGAAACAAAGAGCTGTGGGGGAACGGTACGAGTAGGTTGTT
TTGCATGTCTGAACATTCATGGCCTTGCAGTGGTACCTGCTTCCACCACC
GCTTTGAGAATCGGAATTTTGGACACGTTTGTGTCCTCTGTGACAACGCA
GAGCAGTCCGTCCACGCAAAGCAGGGAGGTTTGCTTTCAGCATGTTTTCC
AACACGAACGCGGTGGGGCAAGACTTTGCCTAGATATGCGCTCGGCGTCC
GCTCGGAGGTACCCACCCGATCGCCCCCGCACTGCTGTGATTATCGTGTG
CCTTTTTTGGTCGTGGTCGCGCTGTTAGGTGAAACTGTGTATGTGTTCTT
GATGTGTGTTCTTAACGTGGCTGCGTGTGGAAAAACGCACCCGGTGTATT
TCTCCAAGAGCTGTCGAATCACAGCAGTAGCACCCGTTAACTTGTCGGCA
C
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:492707..497057+

>mRNA_Ecto-sp6_S_contig99.18864.1 ID=mRNA_Ecto-sp6_S_contig99.18864.1|Name=mRNA_Ecto-sp6_S_contig99.18864.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1089bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:492707..497057+ (Ectocarpus species6 EcLAC_371)
ATGCTGATGCATGCGCGGCGGTTCTGGCGCAACTCGCTCTTGTCGTTGAT
GTCGTCGGCCTGCCTTGTGCGCCCCCCGCCGTCTGCGCAAGCGTTCCTGC
TGACCAGCATAGCATCGACGGCACGCACGTCAACAACGGCAAGACTGGCG
AACGCCATCATCATGGGGAAGCAGCAGGTCGCAACCACCACCACTTCATC
ACGACGAATGTGCAGCAAGGCCCCGCGCTCTTCTAGCGGCAGCAGCAACC
CGCTGCTCTCCTCGATGAGACCCCGAGTCCCCCACCTCTTCGATTCCGCC
GCGTCTTCCAGCCTGGCCGCTTCGCCTGCCACCGGGGACACAACCGCTCC
TGCGCCCAAGGCTGACCAGAACCCACCGCAATCGGGAGCAACCGGCGAGG
GCCGAGGGTTCGGAAGCAAGCCTGCCGGACAGGAGCAGCAGCAGCAGCAG
GAGCAGCAGCACCGGCGGCCGAAACAGCAGCGACGGCCGCAGCCGAAGGC
GCCCCCGCGGGGGGACAACCTGCTGGTGGTGGGTCTCGGTAACCCGGGCG
ACAAGTACAAGATGACCAGGCACAATGCCGGGTTCCTGGTGGCCGAGGAG
CTGGCGAGGCGGCATGGGGGCACGCTCAAGATCAAGACCGCATTCCAGGG
CGAGTATTGCTCGGTGAGAGTGAAAGACAAGTCCGTGGGGATCCTGCGAC
CCATCACGTACATGAACAACAGCGGCATGTCTGCCCGAAAGGTGATGGAC
TTCTTCAAGCTCCCCATGAACGCGGCCATAGTCCTGGTGGACGAGGTAGC
GCTAGACTTTGGCCAGCTCCGGCTCAAGGGAAAGGGGGGTGCGGGGGGGC
ACAACGGGCTCAAGAGCTTGCAGGCACATCTCAAGACTCCGGAGTACACC
CGACTTAGGATCGGCGTAGGAGCGTCCAAGTTTTCGGAGGCCTTGTCGGA
CCACGTTCTTGGAGAGTTCACGAGAACAGAAAAGAAGGAGCTCGACAACG
TTATCGCCGACGCGTGCGACGCGGTGGAGCACTGGATAGAGGAGGAGGAC
ATGGCTAAGGTCATGACGCGGTTCAACTCGGCGCGATGA
back to top