mRNA_Ecto-sp6_S_contig99.18863.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18863.1
Unique NamemRNA_Ecto-sp6_S_contig99.18863.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18863.1 vs. uniprot
Match: D8LSX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX0_ECTSI)

HSP 1 Score: 558 bits (1439), Expect = 3.760e-197
Identity = 321/384 (83.59%), Postives = 325/384 (84.64%), Query Frame = 1 
Query:   55 MLTASVWAGLAPEPAVATAAXXXXXXXXKGYHEGSAIDAFARGREMMRGSEGVEGAPAGVGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXASERGDVGRADLSGQAERGEPSLWERRGRGGHAAGTRRPPSEGSAALTDDAARRRGDSRVEGRHPAPPTNLGLLRTGGAAATFEVTEGQGREGLPRRRTQSRRDEGSGDAEEWPEEEXXXXXXXDDSFGSSGLLALLVCFGLLFCVMEVAKCYFLFECRRRQRWRQRRGATGDTRQMPIASSRVVAPEPPDDGTKGEWVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDAIEHARRLSPGTGYRAVFAPPAAPPXXXXXXPQAEMSEMSRDDVPPHRSPPVSAAPL 1206
            MLTASVWAGLAPEPA     XXXXXXXXKGYH+G AIDAFARGRE+MRGSEG   APAGVG GR                            ASERGDVGRADLSGQAERGEPSLWER+ RGGHAAGTR PPSEGS AL DDAARRRGDSRVEGRHPAPPTNLGLLRTGGAAATFEVTEG GREGL RRRTQSR+DEGSGDAEEWPEEEXXXXXXX        LLALL CFGL FCVMEVAKCYFLFECRRRQRWRQRRGATGDTRQMPIASSRVVAPEPPDDG K EWVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDAIEHARRLSPGTGYRAVFAPPAAPPXXXXXX  AEMSEMSRDDVPPHRSPPVSAAP 
Sbjct:    1 MLTASVWAGLAPEPAATAXXXXXXXXXXKGYHKGRAIDAFARGREIMRGSEGAGRAPAGVGAGREAAAPPEARVVGGAGDGGEGRMLRRRRQASERGDVGRADLSGQAERGEPSLWERQERGGHAAGTRLPPSEGSTALADDAARRRGDSRVEGRHPAPPTNLGLLRTGGAAATFEVTEGPGREGLTRRRTQSRKDEGSGDAEEWPEEEXXXXXXXXXXXXXXXLLALLGCFGLFFCVMEVAKCYFLFECRRRQRWRQRRGATGDTRQMPIASSRVVAPEPPDDGMKDEWVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDAIEHARRLSPGTGYRAVFAPPAAPPXXXXXXXXAEMSEMSRDDVPPHRSPPVSAAPF 384
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BLAST of mRNA_Ecto-sp6_S_contig99.18863.1 vs. uniprot
Match: A0A6H5JH97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH97_9PHAE)

HSP 1 Score: 437 bits (1125), Expect = 5.060e-150
Identity = 271/384 (70.57%), Postives = 284/384 (73.96%), Query Frame = 1 
Query:   55 MLTASVWAGLAPEPAVATAAXXXXXXXXKGYHEGSAIDAFARGREMMRGSEGVEGAPAGVGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXASERGDVGRADLSGQAERGEPSLWERRGRGGHAAGTRRPPSEGSAALTDDAARRRGDSRVEGRHPAPPTNLGLLRTGGAAATFEVTEGQGREGLPRRRTQSRRDEGSGDAEEWPEEEXXXXXXXDDSFGSSGLLALLVCFGLLFCVMEVAKCYFLFECRRRQRWRQRRGATGDTRQMPIASSRVVAPEPPDDGTKGEWVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDAIEHARRLSPGTGYRAVFAPPAAPPXXXXXXPQAEMSEMSRDDVPPHRSPPVSAAPL 1206
            ML+ASVWAGLAPEPAVATAA        KG+H+GSA+D +ARG +M+RGSEG   APAG     XXXXXXXXXX               X  +SERGDVGRADLSGQAE+ E SL ER+GRGGHAAG+R PPSEGS AL +DAARRRGDS VEGRHPAPPTNLGLL TGGAA TFE     GREG PRRRTQSRRD  SGDAEEWPEEEXXX    DD FGSSGLLALLVCFGLLFCVME                       GDTRQMPIASSRVV P P  D TK  WVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDAIE+ARRLSPGTGYRAVFAPPAAP        QAEMSEMSRDDVPPHRSP     PL
Sbjct:    1 MLSASVWAGLAPEPAVATAAAGRAGGRGKGHHKGSAMDTYARGPKMVRGSEGAGRAPAGXXX-XXXXXXXXXXXVVGAWVGGEGRMLRRXRRSSERGDVGRADLSGQAEQEEASLSERQGRGGHAAGSRLPPSEGSTALANDAARRRGDSSVEGRHPAPPTNLGLLPTGGAAVTFE-----GREGWPRRRTQSRRD--SGDAEEWPEEEXXXGDENDDGFGSSGLLALLVCFGLLFCVME-----------------------GDTRQMPIASSRVVVPVPQGDRTKDGWVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDAIEYARRLSPGTGYRAVFAPPAAPSPLPPPQLQAEMSEMSRDDVPPHRSPRFPPRPL 353
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSX0_ECTSI3.760e-19783.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH97_9PHAE5.060e-15070.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:485593..489487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1212
Hectar predicted targeting categorysignal peptide
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001720.1
Cds size1212
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18863.1prot_Ecto-sp6_S_contig99.18863.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 485593..489487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350612.8740406-CDS-Ecto-sp6_S_contig99:485592..4857661682350612.8740406-CDS-Ecto-sp6_S_contig99:485592..485766Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 485593..485766 -
1682350612.8837397-CDS-Ecto-sp6_S_contig99:486681..4867631682350612.8837397-CDS-Ecto-sp6_S_contig99:486681..486763Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 486682..486763 -
1682350612.893895-CDS-Ecto-sp6_S_contig99:487211..4873091682350612.893895-CDS-Ecto-sp6_S_contig99:487211..487309Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 487212..487309 -
1682350612.9041371-CDS-Ecto-sp6_S_contig99:487766..4878491682350612.9041371-CDS-Ecto-sp6_S_contig99:487766..487849Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 487767..487849 -
1682350612.9149773-CDS-Ecto-sp6_S_contig99:488432..4886251682350612.9149773-CDS-Ecto-sp6_S_contig99:488432..488625Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 488433..488625 -
1682350612.922546-CDS-Ecto-sp6_S_contig99:488905..4894871682350612.922546-CDS-Ecto-sp6_S_contig99:488905..489487Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 488906..489487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18863.1

>prot_Ecto-sp6_S_contig99.18863.1 ID=prot_Ecto-sp6_S_contig99.18863.1|Name=mRNA_Ecto-sp6_S_contig99.18863.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=404bp
MVAHGKPARRRRRVWQAAMLTASVWAGLAPEPAVATAAAGRGGGRGKGYH
EGSAIDAFARGREMMRGSEGVEGAPAGVGGGREAAAPPEARVVVGAGGGG
EGRMLRRRRRASERGDVGRADLSGQAERGEPSLWERRGRGGHAAGTRRPP
SEGSAALTDDAARRRGDSRVEGRHPAPPTNLGLLRTGGAAATFEVTEGQG
REGLPRRRTQSRRDEGSGDAEEWPEEEEEDGDENDDSFGSSGLLALLVCF
GLLFCVMEVAKCYFLFECRRRQRWRQRRGATGDTRQMPIASSRVVAPEPP
DDGTKGEWVEVVVDGVWMSGDVPGGEGLPSATGYAVAGASHALHDAIEHA
RRLSPGTGYRAVFAPPAAPPPLPRPQPQAEMSEMSRDDVPPHRSPPVSAA
PLT*
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mRNA from alignment at Ecto-sp6_S_contig99:485593..489487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18863.1 ID=mRNA_Ecto-sp6_S_contig99.18863.1|Name=mRNA_Ecto-sp6_S_contig99.18863.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3895bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:485593..489487- (Ectocarpus species6 EcLAC_371)
ATGGTTGCTCACGGGAAACCCGCGAGGCGGAGGCGCAGAGTGTGGCAGGC
GGCGATGCTCACGGCGTCAGTGTGGGCTGGCCTTGCGCCTGAACCGGCGG
TGGCGACGGCGGCGGCTGGGCGAGGAGGGGGGCGTGGAAAGGGGTACCAC
GAGGGAAGCGCGATCGATGCGTTCGCGAGGGGACGGGAGATGATGAGAGG
CTCGGAGGGAGTCGAAGGAGCACCGGCAGGAGTAGGGGGGGGGCGCGAAG
CAGCAGCGCCGCCAGAGGCCAGAGTTGTTGTTGGTGCTGGGGGTGGAGGC
GAGGGCCGGATGTTGAGAAGGAGGCGGCGGGCCTCGGAGAGGGGGGATGT
CGGCCGAGCCGACCTCTCGGGGCAAGCGGAACGGGGAGAGCCGTCTCTGT
GGGAGCGGCGAGGGCGAGGAGGGCATGCCGCCGGCACCCGCCGCCCCCCA
TCGGAGGGATCGGCGGCTCTCACCGACGATGCAGCAAGGCGCCGGGGCGA
CAGCAGGGTTGAGGGTCGGCATCCCGCGCCACCAACGAACCTTGGGTTGT
TGCGAACCGGAGGGGCGGCGGCAACGTTCGAGGTAAGCGGGGATCCGCCG
TGTGCTGGGCCGTGGTGGCAGACCAGGGGGGGGGGTCTATGATTTGGGCT
CCCTAAGGTCTCGAAGGGAGGTGGTAGTAGTAGCAGCACGGCCGATGGAG
AGGGCCAGGAGAGACTGCCTTCGCGAGAGATAAAGTTCATGAGGAACTAG
GACAGGGAGGGGGTACGCAGACCTTGTCCCTAACCCTAATCCTAACCCCC
CTCCCCCCCACAAGTGCATGCTTTTATCCAACATGTGTGCCTTATCGGAA
TTCCCTGCGAAGGTTACTGAGGGGCAGGGCCGGGAGGGGTTGCCCCGCCG
GAGAACCCAGAGCCGAAGAGATGAGGGTTCGGGCGATGCTGAAGAGTGGC
CGGAAGAGGAAGAGGAAGACGGCGACGAGAACGACGACAGCTTCGGGTCG
TCCGGGCTGCTGGCGCTCCTGGTCTGCTTCGGCCTGCTCTTCTGCGTCAT
GGAAGGTGCGTTTTGGGGGGGGGGGTGCGACGTTGCTCCCTGCAGGCACG
CCACCGGCGGTGTGTGCGGTGTGATTTGGTGGCGTGAGTCGATGCGTACC
TCTGCTATTTATGTGTAGTAGCGTGGGTGTTGTCGTGGTGCCTGGTTGAG
TGGGCGCGATTAGTTGTGTGGGGCGGCAGCGGAAAGACATCGTTGCCTGA
TCGCCTGGCTCCGAACGTCTTCGCATGGGCTAGAGCTGTGCGAGGGTTGC
CCAAGCGTCAACATACAACGAACCATTCTCGTTTCTCTAGGGACAAGCTG
GTGGGTCCGCTGGTACGAAAGGGCCCCAAGCATGCACACGCAACTATTCT
CGTTCCTCTCAGAGGACTTTGTGAATCCTTGTACCCTATCACAAAAGCGG
CCCAAGCGTGCTCATGATATCTCAGGCGAGCTGGGGGATCAATTTACGTT
GTTGCCGAACCATTCAGCCGCTAAACGTGAGGTAGGCGCCAACTTACTTC
CCCGCTCGATCTTGGGATGCGTGCACCGCTCCGCGCCTCGTTTCCTCCTC
CTGTGTTATTTATTTGATGACGTCATTCGTTGGTCCAGTGGCGAAGTGCT
ACTTCCTCTTCGAGTGTCGGCGCCGGCAGCGGTGGCGCCAACGGAGGGGA
GCGACAGGGGATACCCGCCAGGTAAGGGGAAAAAAACGAAAAAGAGGCAA
ACGGGCACTGACTTGAGCACGAGACCATAATGCCGATGGTGTCGTGAGGG
ACGCGTAGCAAGGGCGCGCAAACGGCATCTTCCCGTTTGAGTTTAGGCCT
CCTACTCCAATTTGTAGGGGGCTAGGCTAGAGATGTCGGCCTACGTGATT
CCGGCCATTACCTCTCCTTTCCGGCAACTTTGGCCGCCCTAACTCACATA
GTTGAGGTAGTGTTGTTCGTTGTCCTATGGTGACAAAATGGCACAGCAGT
ATGCGTCAAACTGCCGCTTCGTTCTGTCCAACGTAATACCGTCTTCGGCA
TCTTCACAAACTGCTTGCATTCATGTCTGATCTCCCACCCTCTCCCCCCT
CCGCTGCTACTGCCCCCCCTCCTCCCTTGACATGTCGTCCAATGGCGAAA
CCACTTCAACTGCTCCGCCGTGGTCCAGATGCCCATTGCCTCTAGCCGAG
TGGTCGCCCCAGAGCCCCCAGACGACGGAACGAAGGGCGAGTGGGTGGAG
GTGGTCGTGGACGGCGTCTGGATGAGGTGAGAGTCACGCTGTTGGGGTTG
GTGGGCTCAGGCGGGTGTCGGTCGTTGTGTTTCGTTTCCCGCCGTGCGCA
AGCGATTTCTCCCCTGCCACATGTTTTTGTTCGGTGTGATGTGTTGTGAG
TGCTTGCCTTGAAAAATGCTGTCTCTGATTGCGGAATGAAGGTTGGAAGT
AATCCACTCCTCCCTTCCCTCCGTTTGCCACCCCAAAATACGGACATCTT
TGGCTCCAACATCACAAGGCGCCGCCCGCACGGCAGCAGTCCTTGATGCA
TGCAGAAATCGAATTGGCGTGAGCCCTTTCCCCCCCCCCTCTATCCTGCT
CTCTCCCAATGCATGTACGTGTGCCCCCTGCCTCGCCGACTCGCCTTTAC
TGCCATTCGTCCTTTCCTGATTGGCTGTGTGTTTTTCGGTATTTCGCCAC
ATTGTCGTGTGCCACACGTGTCAGCGGCGACGTGCCGGGAGGTGAGGGCT
TGCCGTCGGCTACCGGCTACGCCGTCGCGGGAGCGTCTCACGCTCTCCAT
GACGCGGTGAGTCTTTCCTGGCGCTCGGTACTTCGTGGGGCGGGGGGGGG
CGTACTCTCATGTTTGGCATGCCTTAGCGGTAGACCCTTGACCACGCATC
CTCGAGACGATGGAGCACTGTTCCCACAGGATCGACCACTGATCGATGGC
AAATCGTTCCTTCTTTCAGGCGTGGGGGGGGGTCCGTGGATGATGACGGT
CAAGGGGGGTTGGCGGTGCTCTTGCCTGTGGGTGCCGACGGGCGAGGTCT
GCGTTGCACACGTTACTTTGTTTGGTGCTTGTGTTGGCACACGTGTTTTT
GTTCAGCTTGACCGTCGCAATTGGTGTCGTAGCCCCTCGCGTCTACGCTG
CCGCCGCTACGTGTGACGTTGGTCGTTCACCACCGAGCAGGCGTTCCGCC
GTGTCAAAGGACAAGAGCTACTAAATACATAGGTCGCGTGGTTTTGAGAC
TTGGCGTGTGTGGGTTCGTATTGGATGATCTGTGTGCGAACAGCAGCACA
GCGCTGTTAAGATGTTTTCGTTCTACGTTCGGCGAAGAACGGGTGAGCTA
GGCCCTAACATACCTGACAGGTATACCGTCCTCTGCCCCTGAACACCAGC
TCGCCTGGGAAGTTCCATGATTTACAACGTATGCTCGGTTCGAGTGTCTT
TTGTAGGGCACCTTGATACTGGGGGCAACTATTGTAAATAGGTGGTATGC
CGGGCTATTTTCTGCTCGTTGGCTCGGAGATCCTGCAGCAATGATTAACT
ACCCTCGGTAATTGTCTGGATATCCTTGTTGCGGATGGTGCATTGCCCGA
AGACGGAACGCTATTTACCCCCCCACACACGCCCACGTCGTTTATCCCCC
GTCATACACATCCTCTAAGCACACCTCTAACGCCCCTCTTGTTTCGCCCC
GTCTCGTGTGCCACCCGTCAGATCGAGCACGCTCGTCGACTCTCGCCAGG
CACAGGTTACCGCGCCGTGTTCGCCCCGCCGGCAGCGCCGCCGCCGCTTC
CGCGGCCGCAGCCACAAGCGGAGATGTCCGAGATGTCACGGGACGACGTT
CCGCCGCACCGCTCTCCCCCGGTTTCCGCTGCGCCCTTGACATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:485593..489487-

>mRNA_Ecto-sp6_S_contig99.18863.1 ID=mRNA_Ecto-sp6_S_contig99.18863.1|Name=mRNA_Ecto-sp6_S_contig99.18863.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:485593..489487- (Ectocarpus species6 EcLAC_371)
ATGGTTGCTCACGGGAAACCCGCGAGGCGGAGGCGCAGAGTGTGGCAGGC
GGCGATGCTCACGGCGTCAGTGTGGGCTGGCCTTGCGCCTGAACCGGCGG
TGGCGACGGCGGCGGCTGGGCGAGGAGGGGGGCGTGGAAAGGGGTACCAC
GAGGGAAGCGCGATCGATGCGTTCGCGAGGGGACGGGAGATGATGAGAGG
CTCGGAGGGAGTCGAAGGAGCACCGGCAGGAGTAGGGGGGGGGCGCGAAG
CAGCAGCGCCGCCAGAGGCCAGAGTTGTTGTTGGTGCTGGGGGTGGAGGC
GAGGGCCGGATGTTGAGAAGGAGGCGGCGGGCCTCGGAGAGGGGGGATGT
CGGCCGAGCCGACCTCTCGGGGCAAGCGGAACGGGGAGAGCCGTCTCTGT
GGGAGCGGCGAGGGCGAGGAGGGCATGCCGCCGGCACCCGCCGCCCCCCA
TCGGAGGGATCGGCGGCTCTCACCGACGATGCAGCAAGGCGCCGGGGCGA
CAGCAGGGTTGAGGGTCGGCATCCCGCGCCACCAACGAACCTTGGGTTGT
TGCGAACCGGAGGGGCGGCGGCAACGTTCGAGGTTACTGAGGGGCAGGGC
CGGGAGGGGTTGCCCCGCCGGAGAACCCAGAGCCGAAGAGATGAGGGTTC
GGGCGATGCTGAAGAGTGGCCGGAAGAGGAAGAGGAAGACGGCGACGAGA
ACGACGACAGCTTCGGGTCGTCCGGGCTGCTGGCGCTCCTGGTCTGCTTC
GGCCTGCTCTTCTGCGTCATGGAAGTGGCGAAGTGCTACTTCCTCTTCGA
GTGTCGGCGCCGGCAGCGGTGGCGCCAACGGAGGGGAGCGACAGGGGATA
CCCGCCAGATGCCCATTGCCTCTAGCCGAGTGGTCGCCCCAGAGCCCCCA
GACGACGGAACGAAGGGCGAGTGGGTGGAGGTGGTCGTGGACGGCGTCTG
GATGAGCGGCGACGTGCCGGGAGGTGAGGGCTTGCCGTCGGCTACCGGCT
ACGCCGTCGCGGGAGCGTCTCACGCTCTCCATGACGCGATCGAGCACGCT
CGTCGACTCTCGCCAGGCACAGGTTACCGCGCCGTGTTCGCCCCGCCGGC
AGCGCCGCCGCCGCTTCCGCGGCCGCAGCCACAAGCGGAGATGTCCGAGA
TGTCACGGGACGACGTTCCGCCGCACCGCTCTCCCCCGGTTTCCGCTGCG
CCCTTGACATGA
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