mRNA_Ecto-sp6_S_contig99.18861.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig99.18861.1 vs. uniprot
Match: D8LSX2_ECTSI (Similar to intersectin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX2_ECTSI) HSP 1 Score: 670 bits (1728), Expect = 3.330e-239 Identity = 387/397 (97.48%), Postives = 389/397 (97.98%), Query Frame = 2
Query: 353 MPGPGGFGRGGGFRXXXXFXXXXXXXXXXXXXXXGPLFGPGPGPLGLVGALATGAAIAAVVGXXXXXXXXXXXAGYIYVVQEPQPGQVGHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQITMNDGYKYGVLRRYSQFDQLRERVSRVVRTTTPPFPPKSSIRSSTVGLGPADLEERRQMLQAWLQSLCTAASTNTPALRVPLYDFLETATYYPPEAPVTSSDPTAASGQHTAVATPAATTATTGVPVAAAYAEALPPAAGTKGIGVPSAGPLPPKPDSAGDGWGVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWMLSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPFG 1543
MPGPGGFGRGGGFRXXXXFXXXXXXXXXXXXXXXGPLFGPGPGPLGLVGALATGAAIAAVVGXXXXXXXXXXXAGYIYVVQEPQ GQVGHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQITMNDGYKYGVLRRYSQFDQLRERVSRV+RTTTPPFPPKSSIRSSTVGLGPADLEERRQMLQAWLQSLCTAAS NTPALRVPLYDFLETA YYPPEAPVTSSDPTAAS QHTAVATPAATTATTGVPVAAAYAEALPPAAGTKG+GVPSAGPLPPKPDS G GW VPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVW LSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPFG
Sbjct: 1 MPGPGGFGRGGGFRXXXXFXXXXXXXXXXXXXXXGPLFGPGPGPLGLVGALATGAAIAAVVGXXXXXXXXXXXAGYIYVVQEPQSGQVGHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQITMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKSSIRSSTVGLGPADLEERRQMLQAWLQSLCTAASANTPALRVPLYDFLETAMYYPPEAPVTSSDPTAASAQHTAVATPAATTATTGVPVAAAYAEALPPAAGTKGVGVPSAGPLPPKPDSTGYGWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPFG 397
BLAST of mRNA_Ecto-sp6_S_contig99.18861.1 vs. uniprot
Match: A0A6H5JHJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ6_9PHAE) HSP 1 Score: 383 bits (984), Expect = 3.720e-129 Identity = 203/212 (95.75%), Postives = 205/212 (96.70%), Query Frame = 2
Query: 908 MLQAWLQSLCTAASTNTPALRVPLYDFLETATYYPPEAPVTSSDPTAASGQHTAVATPAATTATTGVPVAAAYAEALPPAAGTKGIGVPSAGPLPPKPDSAGDGWGVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWMLSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPFG 1543
MLQAWLQSLCTAASTNTPALRVPLYDFLETA+YYPPEAPVTSSDPT AS QHTAVATPAATTATTGVPVAAAYAEALPPAAGTKG+GV SAGP PPKPDSA DGW VPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVW LSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPFG
Sbjct: 1 MLQAWLQSLCTAASTNTPALRVPLYDFLETASYYPPEAPVTSSDPTTASAQHTAVATPAATTATTGVPVAAAYAEALPPAAGTKGVGVSSAGPPPPKPDSAEDGWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPFG 212
BLAST of mRNA_Ecto-sp6_S_contig99.18861.1 vs. uniprot
Match: A0A6H5JJX9_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX9_9PHAE) HSP 1 Score: 211 bits (537), Expect = 2.430e-63 Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 2
Query: 572 AGYIYVVQEPQPGQVGHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQITMNDGYKYGVLRRYSQFDQLRERVSRVVRTTTPPFPPKSSIRSSTVGLGPADLEERR 904
AGYIYVVQEPQPGQV HAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQ+TMNDGYKYGVLRRYSQFDQLRERVSRV+RTTTPPFPPK SIRSSTVGLGPADLEERR
Sbjct: 9 AGYIYVVQEPQPGQV-HAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQVTMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKCSIRSSTVGLGPADLEERR 118
BLAST of mRNA_Ecto-sp6_S_contig99.18861.1 vs. uniprot
Match: A0A7S2SL29_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SL29_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.530e-12 Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 2
Query: 1292 KLTGEQAAVALRTGTGAGQEDLRAVWMLSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKR 1507
KL+ Q AL T TG +E LR+VW L+DID+DG LDRDEFAVA +L QA AG+ PASLP ++VPP KR
Sbjct: 218 KLSPAQVRDALMT-TGLPRETLRSVWELADIDRDGKLDRDEFAVAMFLCRQAQAGSALPASLPVEVVPPGKR 288
BLAST of mRNA_Ecto-sp6_S_contig99.18861.1 vs. uniprot
Match: A0A7S2F4E5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4E5_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 4.740e-12 Identity = 49/107 (45.79%), Postives = 62/107 (57.94%), Query Frame = 2
Query: 1220 WGVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWMLSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPF 1540
W V P + + + + GPS GKL+ Q AL TG Q LR +W LSDID+DG LD DEFAVA YL QA G P +LP+ +VPPSK+ + + NPF
Sbjct: 132 WAVAPYQAEFNQVFYSK-GPSN-GKLSPAQVREALMA-TGVAQGVLRCIWELSDIDKDGQLDMDEFAVAMYLCRQAQRGQPMPQALPSQVVPPSKKS---YIVGNPF 232
BLAST of mRNA_Ecto-sp6_S_contig99.18861.1 vs. uniprot
Match: UPI00146EE9B3 (epidermal growth factor receptor substrate 15-like n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI00146EE9B3) HSP 1 Score: 73.9 bits (180), Expect = 1.540e-10 Identity = 50/103 (48.54%), Postives = 60/103 (58.25%), Query Frame = 2
Query: 1205 SAGD-GWGVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWMLSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQ 1510
SAGD W V PE + D GPS G LTG++ L + L VW LSDID+DGMLDRDEF+VA YL ++A G P SLP +VPPSKR+
Sbjct: 31 SAGDLHWVVKPEEKMKFDAIFESLGPSG-GILTGDKVKPVLLNSK-LPVDILGRVWELSDIDRDGMLDRDEFSVAMYLVYRALEGEPVPMSLPPPLVPPSKRK 131
BLAST of mRNA_Ecto-sp6_S_contig99.18861.1 vs. uniprot
Match: A0A6P8WJF3_GYMAC (LOW QUALITY PROTEIN: epidermal growth factor receptor substrate 15-like 1 n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8WJF3_GYMAC) HSP 1 Score: 73.9 bits (180), Expect = 1.700e-10 Identity = 50/103 (48.54%), Postives = 60/103 (58.25%), Query Frame = 2
Query: 1205 SAGD-GWGVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWMLSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQ 1510
SAGD W V PE + D GPS G LTG++ L + L VW LSDID+DGMLDRDEF+VA YL ++A G P SLP +VPPSKR+
Sbjct: 113 SAGDLHWVVKPEEKMKFDAIFESLGPSG-GILTGDKVKPVLLNSK-LPVDILGRVWELSDIDRDGMLDRDEFSVAMYLVYRALEGEPVPMSLPPPLVPPSKRK 213
BLAST of mRNA_Ecto-sp6_S_contig99.18861.1 vs. uniprot
Match: A0A7S3URG0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URG0_HETAK) HSP 1 Score: 67.8 bits (164), Expect = 4.170e-10 Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 2
Query: 1334 TGAGQEDLRAVWMLSDIDQDGMLDRDEFAVAWYLAHQAAA-GNKPPA--SLPADIVPPSKR--QAAQHSLANPF 1540
TGA + L VW LSD+D+DG LDR+EFAVA YLA + AA G PA SLPA +VPPS+R AA S NPF
Sbjct: 52 TGADAQALAQVWELSDLDRDGALDREEFAVAHYLAAEVAAKGGALPAGPSLPAALVPPSRRGRPAASASANNPF 125
BLAST of mRNA_Ecto-sp6_S_contig99.18861.1 vs. uniprot
Match: UPI001469E16F (epidermal growth factor receptor substrate 15 isoform X1 n=6 Tax=Trematomus bernacchii TaxID=40690 RepID=UPI001469E16F) HSP 1 Score: 73.9 bits (180), Expect = 4.220e-10 Identity = 50/103 (48.54%), Postives = 60/103 (58.25%), Query Frame = 2
Query: 1205 SAGD-GWGVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWMLSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQ 1510
SAGD W V PE + D GPS G LTG++ L + L VW LSDID+DGMLDRDEF+VA YL ++A G P SLP +VPPSKR+
Sbjct: 113 SAGDLHWVVKPEEKMKFDAIFESLGPSG-GILTGDKVKPVLLNSK-LPVDILGRVWELSDIDRDGMLDRDEFSVAMYLVYRALEGEPVPMSLPPPLVPPSKRK 213
BLAST of mRNA_Ecto-sp6_S_contig99.18861.1 vs. uniprot
Match: A0A0L0D9J8_THETB (EH domain-containing protein 3 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D9J8_THETB) HSP 1 Score: 72.4 bits (176), Expect = 8.100e-10 Identity = 51/120 (42.50%), Postives = 67/120 (55.83%), Query Frame = 2
Query: 1190 PPKPDSAGDG-WGVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWMLSDIDQDGMLDRDEFAVAWYLAHQA--AAGNKPPASLPADIVPPSKRQAAQHSLANPF 1540
PP P A D W + PE + D GP AGKL+G A A+ + LR +W L+DID+DG LD DEFAV +L Q A G+ P +LPA++VPPSKR ++ A+PF
Sbjct: 410 PPNPFGASDSDWAIGPEEKQKWDSYFVKMGP-VAGKLSGASAKPAM-VASKLDTTTLRDIWTLADIDRDGHLDADEFAVCMHLLQQKKNAPGSPLPTALPANLVPPSKRGGSE---ASPF 524 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig99.18861.1 >prot_Ecto-sp6_S_contig99.18861.1 ID=prot_Ecto-sp6_S_contig99.18861.1|Name=mRNA_Ecto-sp6_S_contig99.18861.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=398bp MPGPGGFGRGGGFRGGGGFGRGFGRGFGWGPRFGGPLFGPGPGPLGLVGAback to top mRNA from alignment at Ecto-sp6_S_contig99:472053..477208+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig99.18861.1 ID=mRNA_Ecto-sp6_S_contig99.18861.1|Name=mRNA_Ecto-sp6_S_contig99.18861.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5156bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:472053..477208+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:472053..477208+ >mRNA_Ecto-sp6_S_contig99.18861.1 ID=mRNA_Ecto-sp6_S_contig99.18861.1|Name=mRNA_Ecto-sp6_S_contig99.18861.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1194bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:472053..477208+ (Ectocarpus species6 EcLAC_371)back to top |