mRNA_Ecto-sp6_S_contig99.18859.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig99.18859.1 vs. uniprot
Match: D8LSX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX4_ECTSI) HSP 1 Score: 1219 bits (3155), Expect = 0.000e+0 Identity = 673/706 (95.33%), Postives = 676/706 (95.75%), Query Frame = 1
Query: 403 MFPKREAVQQLKDRLQAWCAEENRREQAHVSLPGGTSREEDRPPRRWQAYEFIPLPSRNRTLDSEVLGMNVGRPVNDTRLEVTVDFEKEDEALEVGMRLLDMMADVSREPNEVFGYADDAVTGGQQLGPWKKSGSVNSWRKWLELGDGEDPLPESAVTVFRTVQANWADPNKIAAAMNFTVFWSNARMEESMTDPTTPLRRVEVLHSALHPHVIKIAETFASSDAMLDHFHRNYEGYLSGVFNFRAAVNPTVQAYTPLEASLRPCLSATLPTGAIVPLVAIGGAEDGVSPSTMVVLEGLKLGVRHFVLEVGSSGVKETVEGLQAALAFGVVKRDHLFVTMIVGESNSAVAGGRGIVAAVSATLASGRVDDGGIEADGTATRLLDSVDALVLAREGGEYFDDDRLFLEMWDEAHQAAASPPRGSTGLPAVPTEQTGLDTPADDDPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSNDELDSRLGGHLGVGGHGPKVADRLALLVDQSPAAGAAAADVPGTVPRKLPSLYFGDLGAGDGAATTATIELCRERGVQAFSLEYAGGRGAEEARKGAAAAADYEHEDVTDDEVLAKWVMEIDGGVVWRPREVKEVARVLPLARYYLPPEWISEIADRGGCPPEAWARTLSRLCPSEGTPSEEQLGAEVEETVAGLMTPDDGEEAGGIGDSYDGLWGMDDDE 2520
MFPKREAVQQLKDRLQAWCAEENRREQ VSLPGGTSRE DRPPRRWQAYEFIPLPSRNRTLDSEVLGMNVGR VNDTRLEVTVDFEKEDEALEVGMRLLDMMADVSREPNEVFGYADDAVTGGQQLGPWKKSGSVNSWRKWLELGDGEDPLPESAVTVFRTVQANWADPNKIAAAMNFTVFWSNARMEESM DPTTPLRRVEVLHSALHPHVIKIAETFASSDAMLDHFHRNY+GYLSGVFNFRAAVNPTVQAYTPLEASLRPCLSATLPTGAIVPLVAIGGAEDGVSP TM+VLEGLKLGVRHFVLEVGSSGVKE VEGLQAALAFGVVKRDHLFVTMIVGESNSAVAGGRGI AAVS TLASGRVDDGGIE DGTATRLLDSVDALVLARE GEYFDDDRLFLEMWDEAHQAAASPPR STGLPAVPTEQTGLDTPADDDPF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HLGVGGHG KVADRLALLVDQSPAAGAAAADVPGTVPRKLPSLYFGDL AGDGAATTATIELCRERGVQAFSLE AGGRGAEEARKGAAAAADYEHEDVTDDEVLAKWVMEIDGGVVWRPREVKEVARVLPLARYYLPPEWISEIADRGGCPPEAWARTLSRLCPSEGTPSEEQLGAEVEETVAGLMTPDDGEEA G+GDSYDGLWGMDDDE
Sbjct: 1 MFPKREAVQQLKDRLQAWCAEENRREQEDVSLPGGTSRE-DRPPRRWQAYEFIPLPSRNRTLDSEVLGMNVGRSVNDTRLEVTVDFEKEDEALEVGMRLLDMMADVSREPNEVFGYADDAVTGGQQLGPWKKSGSVNSWRKWLELGDGEDPLPESAVTVFRTVQANWADPNKIAAAMNFTVFWSNARMEESMADPTTPLRRVEVLHSALHPHVIKIAETFASSDAMLDHFHRNYDGYLSGVFNFRAAVNPTVQAYTPLEASLRPCLSATLPTGAIVPLVAIGGAEDGVSPPTMIVLEGLKLGVRHFVLEVGSSGVKEAVEGLQAALAFGVVKRDHLFVTMIVGESNSAVAGGRGIAAAVSETLASGRVDDGGIETDGTATRLLDSVDALVLARESGEYFDDDRLFLEMWDEAHQAAASPPRESTGLPAVPTEQTGLDTPADDDPFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------HLGVGGHGSKVADRLALLVDQSPAAGAAAADVPGTVPRKLPSLYFGDLRAGDGAATTATIELCRERGVQAFSLECAGGRGAEEARKGAAAAADYEHEDVTDDEVLAKWVMEIDGGVVWRPREVKEVARVLPLARYYLPPEWISEIADRGGCPPEAWARTLSRLCPSEGTPSEEQLGAEVEETVAGLMTPDDGEEADGVGDSYDGLWGMDDDE 697
BLAST of mRNA_Ecto-sp6_S_contig99.18859.1 vs. uniprot
Match: A0A6H5L373_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L373_9PHAE) HSP 1 Score: 253 bits (647), Expect = 9.580e-74 Identity = 159/215 (73.95%), Postives = 162/215 (75.35%), Query Frame = 1
Query: 1594 YFDDDRLFLEMWDEAHQAAASPPRGSTGLPAVPTEQTGLDTPADDDPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------GSNDELDSRLGGHLGVGGHGPKVADRLALLVDQSPAAGAAAADVPGTVPRKLPSLYFGDLGAGDGAATTATIELCRERGVQAFSLEYAGGRGAEEARKGAAAAADYEHEDVT 2184
YFDDDR FLEMWDEAH AAAS PR STGLPA PTEQT LDTP DD+PFXXXXXXXXXXXXX GSNDELDSRLG HLGVGGHGPKVADRLALLVDQSPAAG+AA DVPGTVPRKLPSLYFGDL AGDGAATTATIELCRERGVQAFSLEYAGGRGAEEA KGAAAAADYEHEDV+
Sbjct: 4 YFDDDRQFLEMWDEAHHAAASLPRESTGLPAAPTEQTDLDTPVDDNPFXXXXXXXXXXXXXDGSSSDDNSVVGEGRPFDFPADSLTADSPAAESSXXXXXXXXGSNDELDSRLGSHLGVGGHGPKVADRLALLVDQSPAAGSAA-DVPGTVPRKLPSLYFGDLRAGDGAATTATIELCRERGVQAFSLEYAGGRGAEEAGKGAAAAADYEHEDVS 217 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig99.18859.1 >prot_Ecto-sp6_S_contig99.18859.1 ID=prot_Ecto-sp6_S_contig99.18859.1|Name=mRNA_Ecto-sp6_S_contig99.18859.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=841bp MKHPRAARNTAVGVMNCCYRRPFTATVVALLFLSNAPLVYSFFPPVATATback to top mRNA from alignment at Ecto-sp6_S_contig99:425122..437330+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig99.18859.1 ID=mRNA_Ecto-sp6_S_contig99.18859.1|Name=mRNA_Ecto-sp6_S_contig99.18859.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=12209bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:425122..437330+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:425122..437330+ >mRNA_Ecto-sp6_S_contig99.18859.1 ID=mRNA_Ecto-sp6_S_contig99.18859.1|Name=mRNA_Ecto-sp6_S_contig99.18859.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2523bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:425122..437330+ (Ectocarpus species6 EcLAC_371)back to top |