mRNA_Ecto-sp6_S_contig99.18854.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18854.1
Unique NamemRNA_Ecto-sp6_S_contig99.18854.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:373720..377920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1284
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_001820.1
Cds size1284
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18854.1prot_Ecto-sp6_S_contig99.18854.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 373720..377920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350611.8687444-CDS-Ecto-sp6_S_contig99:373719..3739051682350611.8687444-CDS-Ecto-sp6_S_contig99:373719..373905Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 373720..373905 -
1682350611.8800046-CDS-Ecto-sp6_S_contig99:374743..3748371682350611.8800046-CDS-Ecto-sp6_S_contig99:374743..374837Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 374744..374837 -
1682350611.8900127-CDS-Ecto-sp6_S_contig99:375089..3751881682350611.8900127-CDS-Ecto-sp6_S_contig99:375089..375188Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 375090..375188 -
1682350611.899466-CDS-Ecto-sp6_S_contig99:375510..3755201682350611.899466-CDS-Ecto-sp6_S_contig99:375510..375520Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 375511..375520 -
1682350611.9092622-CDS-Ecto-sp6_S_contig99:375554..3756801682350611.9092622-CDS-Ecto-sp6_S_contig99:375554..375680Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 375555..375680 -
1682350611.9193559-CDS-Ecto-sp6_S_contig99:376460..3765281682350611.9193559-CDS-Ecto-sp6_S_contig99:376460..376528Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 376461..376528 -
1682350611.929696-CDS-Ecto-sp6_S_contig99:376825..3769291682350611.929696-CDS-Ecto-sp6_S_contig99:376825..376929Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 376826..376929 -
1682350611.9395537-CDS-Ecto-sp6_S_contig99:377323..3779201682350611.9395537-CDS-Ecto-sp6_S_contig99:377323..377920Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 377324..377920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18854.1

>prot_Ecto-sp6_S_contig99.18854.1 ID=prot_Ecto-sp6_S_contig99.18854.1|Name=mRNA_Ecto-sp6_S_contig99.18854.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=428bp
MAGSGRQGNALPTDDRDLCVIASSLNCQQPRSQVSARPVPNRAGSAPFPD
LRRPILPSHPPLLQPRVQSYGKPATRATNPMSRAVPCAGQLIPFSTKAQD
GMPDPSERNSSNSSVNSSKNRAATTELPSTEGRSGRSWSELGRVPGSHGA
RAGGLRGRTWKALAGTTRECRVGDASQTDPTSIAQCSRRADTGQGSARSE
QLLTRKRSLSGLTALSEDVLVQICEYIHEQDIVRLSTASPAAFDERLWQQ
LHLVRYGSPNNSCLEGLPFAHSSKLQLQSDFPMYHSRLFAIRCHNRCILG
NTVPPDGSCCSRLMFAAEALTREDRLLRGNEETSRLDRAKLRRKQHSTRA
SVMRELAIAKRASTEERMALVDVRSAVERHAYAPGCRPKAPQTPSSWRES
HGVRGKGRANGASRILSPTLTGVFDGE*
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mRNA from alignment at Ecto-sp6_S_contig99:373720..377920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18854.1 ID=mRNA_Ecto-sp6_S_contig99.18854.1|Name=mRNA_Ecto-sp6_S_contig99.18854.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4201bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:373720..377920- (Ectocarpus species6 EcLAC_371)
ATGGCAGGCTCAGGGCGCCAGGGGAATGCCCTGCCGACAGATGATCGCGA
CTTGTGCGTCATCGCATCAAGCCTGAATTGCCAACAACCCCGATCGCAGG
TCTCTGCCCGTCCTGTGCCGAATCGCGCTGGTAGCGCACCTTTCCCCGAC
TTACGCCGGCCCATTCTTCCTTCACACCCACCTCTGCTCCAGCCACGTGT
CCAATCCTATGGAAAGCCAGCAACACGCGCCACAAATCCAATGAGCAGGG
CGGTGCCTTGTGCCGGCCAACTGATTCCCTTTTCGACCAAAGCTCAGGAC
GGCATGCCGGATCCCAGCGAGCGCAACAGCAGCAACAGTAGTGTCAACTC
GTCCAAAAACAGAGCGGCTACAACCGAGCTTCCCTCGACAGAGGGCCGTT
CGGGACGCTCCTGGAGCGAGCTGGGAAGGGTTCCTGGTTCCCATGGAGCA
AGAGCAGGAGGTCTTCGGGGACGAACGTGGAAAGCGTTGGCTGGAACGAC
ACGCGAATGTCGCGTTGGCGATGCCAGTCAAACAGACCCCACCTCAATCG
CGCAGTGCTCGAGACGTGCGGACACCGGGCAAGGGAGTGCTCGATCTGTG
AGTTCAGGATGTAGATCATCGGCAACCCACTACACTACTATTCGGTATGT
CGTGTTCGCCATGATGAAGTATTAATCAAACTTTCAGTGCCCAGCCGACT
TCGCAGCAAACCGGAGCCTTCGTAGACGATAGAAACGCCTTCGACCTTCG
AGATGCTTCTCTGTTTTGGCTCGATGCTTTCATGTTTCCTGGCGGGGTGT
TAAGGTACACAGCACATCCACTATGCTACAAGTCAGCAGCGCTGACTTGT
AGCGTAATGGATATGCTGTTCACCCATTATTCACCCAAGTAGGCTTGAGG
GTACAAAGTAACCGGTGTGACACGCACTTTGAGCTTCCGGCGTGGTGGGC
CACCCATCGTGCACCTCATCGACGTTGTTGTTGTCCGGCAGGAGCAGCTC
CTGACCCGCAAAAGGAGTTTGTCGGGGCTGACGGCTCTGTCGGAAGACGT
CTTGGTTCAAATATGCGAGTACATTCATGAGCAGGACATAGTCCGGTGAG
GGACAGAAAACGGCAGTTCAAGGTTCTTGATTTTCCTTTTGAGGCTTGCG
TATGCGTGCATTTTTTGGAGCCATCCGGAAGGTGGCAACCCTTAGTTGTA
GCGGCCGTGTCCTTGTTGATGTGCCGCCTGCTTTGCATCACGGAAAGTGG
ACACTTTTTTCGTTCGGCGGCAATCTTGCAAAGACTGTTCGCTGTGGGTA
ATACCGTTCAAGAGCGCTCGCCGCATGGTTTGATCACCGGTATCTGCTCC
AACGCCCGCTTCCAACGCGTGCGCGACGTTTCCCTCCCGTAGGCTGTCCA
CAGCCTCTCCAGCGGCGTTCGACGAGAGGCTGTGGCAGCAGCTACATCTC
GTTCGCTACGGTAAGGAGCGATAGAATAGAGCCGCCGCCCCCCCCTCGGG
ATTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAAAATCCAATTCAGTT
CGTGAACTCGGCCACCAGGTTACCGGTTTTTTTTTACCTCTGTTTTTCTT
TTTTGGCGGTATCCATAATGGTGGTCGAGTAGATCATGTTGTGCGGGGTC
GAGAACCCTCACTCCGCGCAAGGGGGATGATCGCACCACGTTGTGTTAAA
ATGGTCAAGCATCCTCGAGGCAGTTACACAGTGCTTATAGCTTTCTCTGG
AAATGAAAGCACCAGAAATTAAGTCATACGCAGCTGTCGTCCGTACGCTA
GGAAGTAAGCACAAGATGCCGAACACCCTTTAGCAGGATGCAGCGCACCC
TTCATGCGACTGGCCGAATACCTCACGGCGCTTCGCGCTTGGTGATGTGA
GAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGA
TGCGAGGTCAATGGGCTAACGACTACGGCATGCACGACTATGAGTACAAC
CCCCCTGCGACTGGGGCGTGTGATGTCTCCGCACATGAGCAAAAGGGGTA
GCAGATAAGGTCGCAAGCTACAGAGGTCGCCAAGTTCCCGTAGCTTCAAC
CTTTCCTAGCGCTGACCCGTTTTGCCATCCTCCCCGGATACAGTAACACC
ACAGCGAGACGACCGCCATCAACAGACGCAATTCTGTACACATACCCCGC
ATGAAAGCGTCACCGCCCGACTGGCTCATCACGCCCGCAGGGTCACCGAA
TAACTCCTGCCTGGAGGGTCTTCCGTTCGCACACTCTTCCAAGCTTCAGC
TCCAGAGCGACTTCCCGATGTACCACTCGAGGTTATTCGCCATCCGGTGC
CATAATCGGTGCATCCGTTCCATATGAGGGTCGAGAACAACCGCAGCAAG
TCGGCAACACGTCTAAATAGATGGAAATTCAACGAAACAATCTAGATCGG
CGCGTTTTCAGGGGAAAACCTGCTTTGGCTGGGCTCGTGGTTGCCGCGAC
AGGCAGCTGAATGGGACGATCGATGGCCCGGAGCGTTCACTATTGGCGGG
AGAATTCAGCAACAAAGATCTTACCCTAGTCACGAGATTAAACTCGACGC
TTCACAACCTCTTGGTATGGCAGAAACTCGCATCCTTCTCATGATACAGC
CTTGCGAAAAACTTTCTAGGTGCTCTTGTCGGGCTTAAATTTCCTTCCCT
TTGGTTGTCTTACCCTGGTCCGCCGTCTACAGGGTTCCGCCGGACGGCAG
CTGCTGCTCTCGGTTGATGTTTGCAGCCGAAGCGCTGACGCGGGAGGACC
GGTTGTTGCGCGGTAATGAAGAAACAAGCCGGTGAGAAACATGCCAGATC
ATTTGTTGAAAACCCGTGAGGAGCTTTGTTCTGTCCTCCCATCATCATCA
TCATATATTTGTTTCCGGTCCCGCATTTTACCACAACTTCAACGTCAGGA
GATGTCGGTGTGTCTCGAACCAAGCCGCTTCCGTTTTCTTTCAATCTTCC
TTGGGCTTTCTTTTTGCTTCGTACCAAAGCATTGGGGACGATACCTAAAT
CATTTTTTTCTGGCCGGTGACGGGGCGATGCAGGTTGGACAGAGCGAAAC
TTCGTCGGAAGCAGCATTCCACCCGTGCCTCTGTGATGCGAGAACTAGCG
ATTGCGAAGCGGGCCAGCACGGAAGAGGTAGGAGGTACAATGTACTCTGG
GTCAGTGAAAATACCGGCATTGCTTTCTTTTTTGTAGCACCGGTCTGTTT
CGTCGTGGCTCAGCTCTCTGTTGAGAGACAGTCAGCCCCTTCAAAGGATC
GTGAATGAACGGATGATCAAACATTCAACACGTTCGGGTTTTAGATGAGT
GGCAACATTATTGGACCGCTCCTGGGATGTATTGTTGCTACACCTGAAGA
ACGCCAAACACTTGAGAACCGAGTCAACGGTTCCAACAGTCCTGTTTTGA
ACCCTGTTTTGAAATTCCTGGAGCTGTATCTACGCGAAACAAAAGAGGAG
TGTTTCCCCACCTCGTCGGAATAGCCACCCCCATGGGGAGAAATTATTTG
CTCTTCGCGGGTACACCGTCCTGCAAGAGCATCGAATCAGTGTCGACTCG
GGAACCTGTTTATCAGAGTTGTCAGTCTGACTCTTGACCCCCTCAGGCAC
TACAAACACGGGTTGGGTGGGGAACGTCCGCTGCGTCGGAAGGTGCTTCC
CTCTCAAAACTTGACTGGTTCGGTTGGCCTTCTGCTAAGCCGAGCGTTGT
TGTCAGGTGTACTGAATACACGCCGTTTTCGTCGCTAGCGTCTTGAACTG
ACCTGGAACTGGTGACGTCACGTCGAAGTAGAACCGCTTCGAAAACCTCA
TCCAGCATGCTTCCATCCGTTCCGCCCAGCTTCGTGGCCTTTCTCTTCGA
GCGGCACTGCGCATGTGCCTTCTTTTCGCAGCTGCTTACGACTCGGATTG
ATTTGATTGGTTGGCATCGTGAATGACCTCTCCCGCCCTCTGCTCGCCCG
ATCCGCCACGTGCAGCGCATGGCGCTGGTGGACGTGCGATCCGCGGTGGA
ACGACACGCCTACGCCCCCGGTTGTCGCCCGAAAGCCCCCCAGACTCCAT
CCTCGTGGCGAGAAAGCCACGGGGTCAGGGGCAAGGGGAGAGCAAACGGG
GCGTCGAGGATACTATCCCCGACTCTCACCGGCGTGTTTGACGGGGAATA
G
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:373720..377920-

>mRNA_Ecto-sp6_S_contig99.18854.1 ID=mRNA_Ecto-sp6_S_contig99.18854.1|Name=mRNA_Ecto-sp6_S_contig99.18854.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1284bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:373720..377920- (Ectocarpus species6 EcLAC_371)
ATGGCAGGCTCAGGGCGCCAGGGGAATGCCCTGCCGACAGATGATCGCGA
CTTGTGCGTCATCGCATCAAGCCTGAATTGCCAACAACCCCGATCGCAGG
TCTCTGCCCGTCCTGTGCCGAATCGCGCTGGTAGCGCACCTTTCCCCGAC
TTACGCCGGCCCATTCTTCCTTCACACCCACCTCTGCTCCAGCCACGTGT
CCAATCCTATGGAAAGCCAGCAACACGCGCCACAAATCCAATGAGCAGGG
CGGTGCCTTGTGCCGGCCAACTGATTCCCTTTTCGACCAAAGCTCAGGAC
GGCATGCCGGATCCCAGCGAGCGCAACAGCAGCAACAGTAGTGTCAACTC
GTCCAAAAACAGAGCGGCTACAACCGAGCTTCCCTCGACAGAGGGCCGTT
CGGGACGCTCCTGGAGCGAGCTGGGAAGGGTTCCTGGTTCCCATGGAGCA
AGAGCAGGAGGTCTTCGGGGACGAACGTGGAAAGCGTTGGCTGGAACGAC
ACGCGAATGTCGCGTTGGCGATGCCAGTCAAACAGACCCCACCTCAATCG
CGCAGTGCTCGAGACGTGCGGACACCGGGCAAGGGAGTGCTCGATCTGAG
CAGCTCCTGACCCGCAAAAGGAGTTTGTCGGGGCTGACGGCTCTGTCGGA
AGACGTCTTGGTTCAAATATGCGAGTACATTCATGAGCAGGACATAGTCC
GGCTGTCCACAGCCTCTCCAGCGGCGTTCGACGAGAGGCTGTGGCAGCAG
CTACATCTCGTTCGCTACGGGTCACCGAATAACTCCTGCCTGGAGGGTCT
TCCGTTCGCACACTCTTCCAAGCTTCAGCTCCAGAGCGACTTCCCGATGT
ACCACTCGAGGTTATTCGCCATCCGGTGCCATAATCGGTGCATCCTCGGC
AACACGGTTCCGCCGGACGGCAGCTGCTGCTCTCGGTTGATGTTTGCAGC
CGAAGCGCTGACGCGGGAGGACCGGTTGTTGCGCGGTAATGAAGAAACAA
GCCGGTTGGACAGAGCGAAACTTCGTCGGAAGCAGCATTCCACCCGTGCC
TCTGTGATGCGAGAACTAGCGATTGCGAAGCGGGCCAGCACGGAAGAGCG
CATGGCGCTGGTGGACGTGCGATCCGCGGTGGAACGACACGCCTACGCCC
CCGGTTGTCGCCCGAAAGCCCCCCAGACTCCATCCTCGTGGCGAGAAAGC
CACGGGGTCAGGGGCAAGGGGAGAGCAAACGGGGCGTCGAGGATACTATC
CCCGACTCTCACCGGCGTGTTTGACGGGGAATAG
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