mRNA_Ecto-sp6_S_contig99.18831.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18831.1
Unique NamemRNA_Ecto-sp6_S_contig99.18831.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18831.1 vs. uniprot
Match: A0A6H5KN12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN12_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 1.360e-84
Identity = 159/201 (79.10%), Postives = 164/201 (81.59%), Query Frame = 1 
Query:    1 AATVSEEQGLPPRTRPASQQESAGAKRKALVGLLGNFVAFLKADDDASSPGNPPTLT--GRQEGNRLGRGNSADPGQRNGGGRSSRSASPPSKETVAGVMVNGYWFPSLDAAAKAPAGKGFDFAEAAANAAAETARTKERRQKMQAAKRRAAELARPKGVDMTCGAVLLSCPARYDDSGEGVAADDDGFLGGVRQEEEDEK 597
            AATVSEEQGLPPRTR ASQQE AGAKRKALVGLLGNFVAFLK DDDAS PGNPPTLT  GRQEG+R G                     PPSKETVAGVMVNGYWFPSLDAAAKAPAGKGFDFAEAAANAA    R KERR+KMQAAKRRAAELARPKGVD TCGAVLLSCPAR+D+SGEGVA DDDG L GVRQEEE+EK
Sbjct:   91 AATVSEEQGLPPRTRAASQQEWAGAKRKALVGLLGNFVAFLKTDDDASPPGNPPTLTAEGRQEGDRFGGXXXXXXXXXXXXXXXXXXXXPPSKETVAGVMVNGYWFPSLDAAAKAPAGKGFDFAEAAANAAXXXXRAKERRRKMQAAKRRAAELARPKGVDFTCGAVLLSCPARHDNSGEGVAGDDDGVLEGVRQEEEEEK 291
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KN12_9PHAE1.360e-8479.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:218762..222501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size604
Hectar predicted targeting categoryother localisation
Exons5
Cds size600
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350608.3818002-CDS-Ecto-sp6_S_contig99:218763..2188281682350608.3818002-CDS-Ecto-sp6_S_contig99:218763..218828Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 218764..218828 -
1682350608.400929-CDS-Ecto-sp6_S_contig99:220024..2201301682350608.400929-CDS-Ecto-sp6_S_contig99:220024..220130Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 220025..220130 -
1682350608.4145484-CDS-Ecto-sp6_S_contig99:220563..2206411682350608.4145484-CDS-Ecto-sp6_S_contig99:220563..220641Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 220564..220641 -
1682350608.4250443-CDS-Ecto-sp6_S_contig99:221263..2214341682350608.4250443-CDS-Ecto-sp6_S_contig99:221263..221434Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 221264..221434 -
1682350608.4353282-CDS-Ecto-sp6_S_contig99:222321..2225011682350608.4353282-CDS-Ecto-sp6_S_contig99:222321..222501Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 222322..222501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18831.1prot_Ecto-sp6_S_contig99.18831.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 218764..222501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18831.1

>prot_Ecto-sp6_S_contig99.18831.1 ID=prot_Ecto-sp6_S_contig99.18831.1|Name=mRNA_Ecto-sp6_S_contig99.18831.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=200bp
AATVSEEQGLPPRTRPASQQESAGAKRKALVGLLGNFVAFLKADDDASSP
GNPPTLTGRQEGNRLGRGNSADPGQRNGGGRSSRSASPPSKETVAGVMVN
GYWFPSLDAAAKAPAGKGFDFAEAAANAAAETARTKERRQKMQAAKRRAA
ELARPKGVDMTCGAVLLSCPARYDDSGEGVAADDDGFLGGVRQEEEDEKG
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mRNA from alignment at Ecto-sp6_S_contig99:218762..222501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18831.1 ID=mRNA_Ecto-sp6_S_contig99.18831.1|Name=mRNA_Ecto-sp6_S_contig99.18831.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3740bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:218762..222501- (Ectocarpus species6 EcLAC_371)
GCGGCGACGGTTTCCGAAGAGCAAGGACTGCCGCCGCGCACCCGACCGGC
CTCTCAGCAAGAGTCAGCCGGCGCCAAGCGGAAGGCCCTCGTGGGCCTCC
TCGGCAACTTCGTGGCCTTTCTCAAGGCCGATGACGACGCCTCCTCCCCG
GGAAACCCACCGACGCTGACGGGACGACAGGTGTGTAGGGGGGGGGGCGT
ACTCTTATGTTTTTCATGCCTTAGCGGTTAGACCATTGACCACGCGTCCT
CGAGAGGACGGAGCATTGTTCCCACAGGACCGATCACCGATGGCCAATCG
TTCCTTCCTACTTTACCAAAGGTGGCTCAAAAATGTCTTCCCTAGTCTGT
CTATCCTTGCGGCATTTACAATGTTTGCAGCATTTTTTGGGTTTTGCTTT
ATTTTTTCTTAGGCGAATGGGGGGGGGGGGGTGATTCGTACGGAACCCCT
ACGTCGTGCCGTCGCAAAGGAAACACTTAGTTGTATGTCTACGTAGCGTA
CGTTCGAAGTGGTAGTACAATGTTGGTTGAACATGACAGCGCTCTCCCGG
AAGTCGCTGCACGTGATCTCTGGGGAGGGGGACAAGGTCTCATGTCCATC
CAGCCACGTGCTTCTAGCCTCTCCTACCAGGCATTCTCTTCCTTACAAGA
TTGTTTTGATGGAACCTTACTAAGGGCGCATGTTTTCGTGAGAGTGTGGA
GACGAAGATCCGTTGTTACAGATTTGAGGCTGGTGGACTTAACCGTTGTG
TGTGGGGGCGAAGGGGAAGCATGCCAATCATCCACGTCTACACCTGCACG
CTTCTCTCTTGGCGATGTGGCAGCGCGTCGGCTGACCCATCAAATCATGC
CATTCTTGTAGTACCGGGGCCGTACACACTAGACACGCTCGGGCGCGCGT
GTGCGTGTTGACAGATCTGCAAACATGACAGCACGCGGGGTGTGCGGTGC
TGTCAACACCGTTCGCCATCACCCATGTTCCCACCCACGAGGGGTACACG
CGGCTGTAAGCCCTCACGCCCCCTTCTTCCTGTTTGCATACGCACGAACT
TCAATCTTTGTTGTCAGGAGGGGAACCGATTGGGCAGGGGCAACTCCGCC
GACCCCGGCCAACGCAACGGTGGGGGGAGGTCTTCTCGATCGGCGTCGCC
CCCTAGCAAGGAGACCGTTGCAGGCGTTATGGTGAACGGTTACTGGTTCC
CTTCGCTTGACGCTGCTGCCAAGGCTCCCGCTGGCAAGGTGCGGCAAGCA
GAAGGGTCTCCTCGGTCTTGGCCTACTGCCGTTTCTGTGAAGCTGCGGCA
TCGTGGAACCGCTGTCCGTCTACAATATTGGATCGACGTATAGAATATTT
TAGGAGTGTATGGTGCTCAAGTGTTTTGGTACTCCATTCTGTTGTTTTTC
TTGCCCCACCGCATGAACTGAAGTGAGAATGGTGTACAGGCACGCGTATT
TTGTGTTTTTATTGCCAATAAGGGAACCAAGAGAGACAGAGACAGAGAGA
GAGAAACAACAGAATCAGCATTGACAGCAGCGGATGGAAGGGGCTGCTTT
GTGTCGGACAATTTGTTTCTGAAGCACCTCGCAGGAGACGGAGGAAGAGA
CTCTGCCCTCTCCGCGCGTTGGGTTTCTCGGACAGGGATGCGCACGCTTG
ACACAACAAACTGTCTTTGCTGACATGTGCAAACAACAGCAGTAGCTTGA
AACGGTGATTTTAGCGGTGACTTTGCGCGTGAACAGGTGCACAAGCTGCT
GGAAACCAGACCGTTGGCTCTCCGAACCTTGTCCTCAGCTCACAACAAAG
TAAAAATGTATATATTTTCGCTGTTCCTTCATTTGCGTGTTTTTGCTGTT
CTTAATTTAGGGTTTCGACTTCGCTGAGGCTGCGGCGAACGCGGCTGCCG
AGACCGCTCGCACTAAGGAGAGGCGTCAAAAGATGCAGGTTAGTTTGGGG
AAGAGTGGGGGGGCGTGCGGAGTTTACCTCACGAATCTGTGGGGGGGGGG
TAGTGACCTCTGGATGCAGCTAGTGGCGTGCGAATTTTTTCGACGCTTTC
GGCAAAAGGCTAGTTGTTTGCCACCTATAGCCCCGATCTCTCCCTTCTTC
CTGCCCCCCCCCTTCCTGCTCGGCTCTCTACCCAGCCCCCTGTGGTGTTG
GTGGCCTTGAAAATGGGTCCCATCTCTCCAACAGCTGCCGAGCACGTTCC
TTCTCATTGCACTGTACTTTTACCCGACTGGTTTATACTCTCGGTGATGG
ATGTGATAATCTCACAATGCTTTTACCCGACGGATAAAACTGTCGATGGT
GGTGGATGTGATCACCACACACTACTCTTTCCCGACTGGTTATACTGTCG
GCGCCGGATGTGATCAAACAGGCCGCGAAACGCCGGGCCGCGGAACTCGC
ACGACCCAAAGGCGTGGACATGACGTGTGGTGCTGTTCTCCTGTCCTGCC
CCGCCCGGTACGACGACTCCGGCGAAGGTGCGAACCGAAGTTGCTGCTAC
AGCAGCGGCTACGGTTAAAGAGGGATTTTTCTGAGAAAAAATCGGATTCA
TTTGGGTGTGTTTGGCTTCTCCAGACCATGCACAGTGCTTCTACGCCTAT
TACACAGCAGTACGGTTTGAGAGAAAACCGGATTTGAGGATTGTTTCTGG
CTTGCACCTTTTACCGACCATGAGAAATACACCTATTGCACGGTTTACGA
GAAAACCGGATTCGAGAGATTGTTGCGGGCTTGTACCTTGTACCGACCAT
GAGAAATGCACCTATTACACGGTTTACGAGAAAACCGGATTAGAGGGATT
GTTGCGAGCTTGTACCTTTTACCGACCATGAGAAATACACCTTTTACACG
GTTTAAGACAAAAAGCGGTTTTGAGAGGTTGTTGCTGGCTGGTCCCGACC
CTCTCTTGCACGATAGCCACTACTGCTGTGCGTACGATTTTTTTAAGTTT
GTCGGGCTCAAACTCCTCTTCGCGATTTGTTTAGATCGAAGTTCGAATGA
CGCAATAAGGCAGCACATACCCTGGTGGTCACGAAGCTACAGTACTGCTT
TGTTTCGAGCTCAAGTTCTCGTCTAGAAAAGCGGGTTCCAGTGTTGAGAG
CAAGGCGGATCCTTCTCGAAAACGGTTTTGTTTCGAAAGGCTGCTGCTAT
TGAGGGTATGCATAGGGTTCGTGCCTTGGAGCTGTGGCGGTCGGCAAGTC
CAGCAATCGGGGGGAAGGTGGTATAATGTCATCGTGTGACAACTCTTTTC
TGCAAATATGGTACCCATCCACCTCGAAGCAACCAAACGAGAACCAACCG
CATCTGGCAGCAAAGGGCACGCATCTATCGATCGCTCTCATTGGGTCCGA
GGCGTTCGTAGAGGGGCGAAGGGATAACCCTCGCACACCGTCCTGGCAGC
CAGAGGGACTGTCAGAAAGTCCAGCCAATTACAGAGAGGCGGACCGAAAG
AAAACTTGCACACCGTCCCGGCAGCCAGAGGGACTGTCGTCATCTCCCAA
GGCCAGCCTTCTCTTTTGACGTGCAAACGTTAGCCTTAGCTAGCTAACCT
TTCGCAACCACCGCGTCAAGATGTCGGGCTGCGTGGAATCGACCTCCGGA
AGGGTGCATGCAGCACCTTAGACAACAACGCGCGGTTGAATATATTGACC
CGCTCACTTTTAAACACGGACAGGTGTTGCTGCTGATGACGACGGGTTCT
TGGGGGGGGTGCGGCAGGAGGAGGAAGACGAGAAGGGGGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:218762..222501-

>mRNA_Ecto-sp6_S_contig99.18831.1 ID=mRNA_Ecto-sp6_S_contig99.18831.1|Name=mRNA_Ecto-sp6_S_contig99.18831.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:218762..222501- (Ectocarpus species6 EcLAC_371)
GCGGCGACGGTTTCCGAAGAGCAAGGACTGCCGCCGCGCACCCGACCGGC
CTCTCAGCAAGAGTCAGCCGGCGCCAAGCGGAAGGCCCTCGTGGGCCTCC
TCGGCAACTTCGTGGCCTTTCTCAAGGCCGATGACGACGCCTCCTCCCCG
GGAAACCCACCGACGCTGACGGGACGACAGGAGGGGAACCGATTGGGCAG
GGGCAACTCCGCCGACCCCGGCCAACGCAACGGTGGGGGGAGGTCTTCTC
GATCGGCGTCGCCCCCTAGCAAGGAGACCGTTGCAGGCGTTATGGTGAAC
GGTTACTGGTTCCCTTCGCTTGACGCTGCTGCCAAGGCTCCCGCTGGCAA
GGGTTTCGACTTCGCTGAGGCTGCGGCGAACGCGGCTGCCGAGACCGCTC
GCACTAAGGAGAGGCGTCAAAAGATGCAGGCCGCGAAACGCCGGGCCGCG
GAACTCGCACGACCCAAAGGCGTGGACATGACGTGTGGTGCTGTTCTCCT
GTCCTGCCCCGCCCGGTACGACGACTCCGGCGAAGGTGTTGCTGCTGATG
ACGACGGGTTCTTGGGGGGGGTGCGGCAGGAGGAGGAAGACGAGAAGGGG
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