mRNA_Ecto-sp6_S_contig99.18825.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18825.1
Unique NamemRNA_Ecto-sp6_S_contig99.18825.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18825.1 vs. uniprot
Match: A0A6H5JSR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.840e-12
Identity = 43/80 (53.75%), Postives = 50/80 (62.50%), Query Frame = 2 
Query:    2 DHPRVAAALNNRAGLLTTQ---------------GKFTETHRLFERALAISEGALGVDHPDTIMSRACIAALYTKQGLLD 196
            DHP VA  L+NRAGLL+ Q               GK+ + H L ERALAI EGALGVDHPDTI S   +A LY +QGLL+
Sbjct:  175 DHPLVANVLHNRAGLLSAQYALPRRIRLLLGFLQGKYVKAHALLERALAIREGALGVDHPDTITSLGALADLYARQGLLE 254
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BLAST of mRNA_Ecto-sp6_S_contig99.18825.1 vs. uniprot
Match: A0A1A9NP79_9PROT (Uncharacterized protein n=2 Tax=Methylobacillus sp. MM3 TaxID=1848039 RepID=A0A1A9NP79_9PROT)

HSP 1 Score: 65.9 bits (159), Expect = 4.450e-8
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 3 
Query:  219 KQSFRSSVPLGPDHPSVAAALNDRACLLQSQGKYAEAEPLYERSQAIREKVLG 377
            K+S + +   GPDHP+VA +LN+ A L +++G+YA+AEPLY+RS AIREK LG
Sbjct:   48 KKSLQVAERGGPDHPNVATSLNNLAALYKAKGQYADAEPLYQRSLAIREKALG 100
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BLAST of mRNA_Ecto-sp6_S_contig99.18825.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.820e-8
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 3 
Query:  246 LGPDHPSVAAALNDRACLLQSQGKYAEAEPLYERSQA 356
            LGPDHPS+A  LN+RA LL++QGKY EAEPLYERSQA
Sbjct:   90 LGPDHPSLATTLNNRAGLLEAQGKYVEAEPLYERSQA 126
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BLAST of mRNA_Ecto-sp6_S_contig99.18825.1 vs. uniprot
Match: A0A6H5KLA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.970e-7
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 3 
Query:  267 VAAALNDRACLLQSQGKYAEAEPLYERSQAIREKVLG 377
            VA  LN+RA LL +QGKY EAEPLYERSQAIREKVLG
Sbjct:   67 VATTLNNRAGLLANQGKYIEAEPLYERSQAIREKVLG 103
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BLAST of mRNA_Ecto-sp6_S_contig99.18825.1 vs. uniprot
Match: A0A1G0MZL8_9DELT (Uncharacterized protein n=1 Tax=Geobacteraceae bacterium GWC2_53_11 TaxID=1798316 RepID=A0A1G0MZL8_9DELT)

HSP 1 Score: 63.5 bits (153), Expect = 2.350e-7
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 3 
Query:  219 KQSFRSSVPLGPDHPSVAAALNDRACLLQSQGKYAEAEPLYERSQAIREKVL 374
            K++ R +   GP+HP  A +LN+ A L  +QGKYAEAEPLY+RS AIRE +L
Sbjct:   52 KEALRVAENTGPEHPDTATSLNNLAGLYDAQGKYAEAEPLYKRSLAIRENIL 103
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BLAST of mRNA_Ecto-sp6_S_contig99.18825.1 vs. uniprot
Match: B0JTC7_MICAN (Kinesin light chain 1 n=1 Tax=Microcystis aeruginosa (strain NIES-843 / IAM M-2473) TaxID=449447 RepID=B0JTC7_MICAN)

HSP 1 Score: 57.8 bits (138), Expect = 1.070e-6
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:  246 LGPDHPSVAAALNDRACLLQSQGKYAEAEPLYERSQAIREKVL 374
            LG +HP VA +LN+ A L ++QGKYAEAEPLY R+ AIREK L
Sbjct:    5 LGEEHPDVATSLNNLADLYRAQGKYAEAEPLYLRALAIREKQL 47
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BLAST of mRNA_Ecto-sp6_S_contig99.18825.1 vs. uniprot
Match: A0A6H5JIH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.170e-6
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:  216 RKQSFRSSVPLGPDHPSVAAALNDRACLLQSQGKYAEAEPLYERSQAIREK 368
            R Q+  + V +GP+HP VA  L +RA LL  +GK AEAEPLYERSQAI+EK
Sbjct: 1653 RSQAITAKV-IGPEHPDVATVLKNRALLLAYEGKDAEAEPLYERSQAIQEK 1702
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BLAST of mRNA_Ecto-sp6_S_contig99.18825.1 vs. uniprot
Match: A0A0S8E664_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium SM23_25 TaxID=1704028 RepID=A0A0S8E664_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.240e-6
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 3 
Query:  246 LGPDHPSVAAALNDRACLLQSQGKYAEAEPLYERSQAIRE 365
            LGPDHP VAA+LN+ A L ++QG+YAEA+PL++RS AI+E
Sbjct:    4 LGPDHPDVAASLNNLALLYKTQGQYAEAKPLFKRSLAIKE 43
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BLAST of mRNA_Ecto-sp6_S_contig99.18825.1 vs. uniprot
Match: D7FWM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM6_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 9.230e-6
Identity = 32/62 (51.61%), Postives = 35/62 (56.45%), Query Frame = 3 
Query:  246 LGPDHPSVAAALNDRACLL------------------QSQGKYAEAEPLYERSQAIREKVLG 377
            LGP+HP VA  L  RA LL                  +SQGKY EAEPLY+RSQA  EKVLG
Sbjct:    6 LGPEHPDVATVLEIRALLLPNQVWLGLNVLAMACSTTESQGKYEEAEPLYDRSQATPEKVLG 67
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BLAST of mRNA_Ecto-sp6_S_contig99.18825.1 vs. uniprot
Match: A0A1B7VCZ1_9NOST (Uncharacterized protein (Fragment) n=1 Tax=Anabaena sp. LE011-02 TaxID=1710892 RepID=A0A1B7VCZ1_9NOST)

HSP 1 Score: 53.1 bits (126), Expect = 9.320e-6
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 3 
Query:  246 LGPDHPSVAAALNDRACLLQSQGKYAEAEPLYERSQAIREKVLG 377
            LG DHP VA++LN+ A L  SQGKY EAEPLY+++  I E+ LG
Sbjct:    5 LGDDHPDVASSLNNLAGLYYSQGKYNEAEPLYQQALNIFEQRLG 48
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JSR2_9PHAE1.840e-1253.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1A9NP79_9PROT4.450e-856.60Uncharacterized protein n=2 Tax=Methylobacillus sp... [more]
A0A6H5K0C4_9PHAE5.820e-878.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLA8_9PHAE1.970e-781.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1G0MZL8_9DELT2.350e-755.77Uncharacterized protein n=1 Tax=Geobacteraceae bac... [more]
B0JTC7_MICAN1.070e-665.12Kinesin light chain 1 n=1 Tax=Microcystis aerugino... [more]
A0A6H5JIH9_9PHAE1.170e-660.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0S8E664_9BACT1.240e-665.00Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
D7FWM6_ECTSI9.230e-651.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1B7VCZ1_9NOST9.320e-659.09Uncharacterized protein (Fragment) n=1 Tax=Anabaen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:180950..183884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1122
Hectar predicted targeting categoryother localisation
Exons7
Cds size561
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18825.1prot_Ecto-sp6_S_contig99.18825.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 182266..183778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350608.2734976-UTR-Ecto-sp6_S_contig99:180949..1810071682350608.2734976-UTR-Ecto-sp6_S_contig99:180949..181007Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 180950..181007 +
1682350608.281739-UTR-Ecto-sp6_S_contig99:181252..1815051682350608.281739-UTR-Ecto-sp6_S_contig99:181252..181505Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 181253..181505 +
1682350608.2894814-UTR-Ecto-sp6_S_contig99:181821..1819471682350608.2894814-UTR-Ecto-sp6_S_contig99:181821..181947Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 181822..181947 +
1682350608.2978008-UTR-Ecto-sp6_S_contig99:182247..1822651682350608.2978008-UTR-Ecto-sp6_S_contig99:182247..182265Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 182248..182265 +
1682350608.3560889-UTR-Ecto-sp6_S_contig99:183778..1838841682350608.3560889-UTR-Ecto-sp6_S_contig99:183778..183884Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 183779..183884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350608.3070145-CDS-Ecto-sp6_S_contig99:182265..1823731682350608.3070145-CDS-Ecto-sp6_S_contig99:182265..182373Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 182266..182373 +
1682350608.3162696-CDS-Ecto-sp6_S_contig99:182662..1827881682350608.3162696-CDS-Ecto-sp6_S_contig99:182662..182788Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 182663..182788 +
1682350608.3257356-CDS-Ecto-sp6_S_contig99:183089..1832151682350608.3257356-CDS-Ecto-sp6_S_contig99:183089..183215Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 183090..183215 +
1682350608.3382146-CDS-Ecto-sp6_S_contig99:183577..1837781682350608.3382146-CDS-Ecto-sp6_S_contig99:183577..183778Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 183578..183778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18825.1

>prot_Ecto-sp6_S_contig99.18825.1 ID=prot_Ecto-sp6_S_contig99.18825.1|Name=mRNA_Ecto-sp6_S_contig99.18825.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=187bp
MPLYERSQAIREKVLGPEHPEVATTLNNRAGLLTSQGKYAEGKSLYERSQ
AIREKVLGPEHASMATTLNRWANLLESQGKHDEADPLNVRALEILGATVG
QEHPNYASTLNNRAGLLAAREEYTEALPLLERAVRIFTKKVWGNHEDAIS
GPLGACARQGSCTIAGGVLKVKPHARRTHRAKAWYY*
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mRNA from alignment at Ecto-sp6_S_contig99:180950..183884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18825.1 ID=mRNA_Ecto-sp6_S_contig99.18825.1|Name=mRNA_Ecto-sp6_S_contig99.18825.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2935bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:180950..183884+ (Ectocarpus species6 EcLAC_371)
TGATCATCCGAGGGTTGCGGCAGCGCTCAACAATCGGGCGGGGTTGCTGA
CAACACAGGTGCGACGAAAACAATGCTTCCAGATGCAACCAGACGGACAG
CAATTTCCGGATGCTTGTGGATGTTCAAAACCCTGCCACACCATTGGTGG
AACACGTGGCGATGAGGATACTTGTTGTGTTGTTGTTTCGCTTACGCCAG
TGGTTCAGGGAACCATTCAGGGCAATGCCCACTTGCATTGCCCAAGTTGT
AGCTTGTTCAGCAATCGGTTTTTTGCAAGCATGTGCGTACTGTGTGCGTT
CAGGGAAAGTTTACCGAGACGCATCGATTGTTTGAACGAGCCCTGGCCAT
AAGCGAAGGTGCTCTGGGGGTGGATCATCCGGACACGATCATGTCCCGCG
CTTGTATAGCGGCCTTGTACACGAAGCAGGGGTTGTTGGACAAGGCTGCT
CCTCTGTTGAAGGAAGCAGTCTTTTCGTTCGAGCGTGCCCTTGGGGCCTG
ATCACCCGAGCGTTGCGGCAGCGCTCAACGACCGGGCGTGCTTGTTGCAG
AGCCAGGTGAGAACCTTGTGGTGCTTGCAGGTACTTCTAGAAGAATTCAT
TTCTCTGCATCTGTACATCTCTTTTTCATTGAATTCCGACTCTCGGCCGC
CCTGTTTACCACATATCATGGCCAAAGAACCAAGTTAAATCCACTCCGTG
AAAGGCCACAAGCCCTGCGAGGGACGTTCTGGGGATGGAGCACCACGATG
TGGACCAGGCGCAAAACACACTGGAGCGCGTGGTTGAGAACGTTTTTTAT
CCCCAGTTGTAGGTCCAAGTTTGACTGAACTATGCATAAATCTCTGCCGT
GGTATGCACGACTGCACACCAGGGCAAGTACGCTGAGGCCGAGCCTCTCT
ACGAGCGATCACAGGCCATACGAGAGAAGGTGCTAGGTCGGTAGCATCCG
GATGTGGCCACAACGCTCAACGATTGGGCGTCGTTGTTGCCGAGACAGGT
GGGAGCCAAAGCATGCCTGTATGCATTGATTCTTGCAGTCGCAGATCTTC
TGTTGACTCCGGCAGCCGACTCTCTGCTGCGCTATTTACCACATGTCATG
GCGCGCGGCTGAGACAGAGCCATTCTGTGAACGGTCGCAAGCCAAGAGGG
GGAAGCTCTGGGCTTGGAGCACCCGGATTTGGCGCAGGAGCTCAACTACG
GGCGGGCGTGATTGAGGAATTGTTTTCCGCGGTTGTAGGTCCCACTATGA
CTGGACTATGCACACATCTCTCCCGCGCTATGTACGACTGCATGCCAGGG
CAAGTACGCCGAGGCCATGCCACTCTACGAGCGGTCGCAGGCCATTCGAG
AGAAGGTGTTAGGTCCGGAGCATCCGGAGGTGGCCACAACACTCAACAAC
CGGGCGGGTTTGTTGACCAGCCAGGTGAGGGGCAAGCACTTGTTCCACAT
GTTTCTAGAAGGAAAGCTCCTCCGAAGTTCTAGATATCAATTTGACTGGA
TTCCGATTCTCTGCTGCGCTGTTCACATATCATGGCGCACGTGCTGAGAC
AAACCCTTGCGAGGGAAGTTCTGGGGCTTGAGCACCCGGATGTGACCCAG
GTGCAAAGCACTCGGGCGGGCGTGGCTACGAAAGTCTTCATCACCAGTTG
AAGATCCCAATTTGACTGAACTATGAGAACATCTCTGCCGCGCTGTGTAC
GACTGCATGCAAGGGCAAGTATGCTGAGGGCAAGTCGCTCTATGAACGGT
CACAAGCCATACGAGAGAAGGTGCTAGGTCCGGAGCATGCGAGTATGGCC
ACAACGCTCAACCGTTGGGCGAACTTGCTGGAGAGCCAGGTGAGAGCCAA
ACGTGCCTCTAGGTTCTTGTAGAGCACAATAATTTCTCCCCACTTCTAGA
TCTCAATTGTGTAACATTGATCTCTCCTTGGCACGATTCACCACCTATCA
TGGCACGTGTGCTGAGACCGACCAACTCTACTGACGCCCATAAGCTACAC
GAGGGAAGGTGCTGGGCATGGGGCGCCCGGATGTGGCCCACAGGGCGCTC
AACAATCGAATGGGCGTGATTGAAGAGTGATGTACATCTCGGTTTTATTG
CACTATAGATAACACTCGGCTGTGTGCGACTCCACGCCAGGGCAAGCACG
ACGAGGCGGATCCTCTAAACGTCCGGGCGCTCGAAATTCTGGGTGCAACG
GTAGGCCAAGAACACCCTAACTATGCATCAACGCTCAACAACCGGGCGGG
GTTGTTGGCAGCCCGGGTAAGAGTCGAAGGAACTTTCCAGGATTCCTTTG
AGGCGTTGTCGAGACGTTGTTGGGCAAGCAGGCAGGGCAGGCGTTTCATG
ATCTTGCCGTGAATTTCCTTGCGTCAGCGTACTTGTTGAAGGAAAGTTCG
ACCACAAGTTGCAGAATCTTCGGCGACACCAATGTGATGCCTTGTTGGCG
TGGAATCCCTCACATGTCGATGCGCATTGTTTCACAATCTGGCCGAACCG
CTTGCTTTCCACCACGGCTTGTGTGTCCTACCTGGTGAACGAATCGGTGT
TTTCACCCCCAAGTCTTCGTGTATGCAGTTTGGCGCACTCGATTTAGTTT
GTCAGCCCTTCATCTCAATCGTCCACAGGAGGAATACACAGAGGCACTTC
CACTGCTGGAAAGGGCTGTCAGAATCTTTACGAAGAAGGTTTGGGGAAAC
CACGAAGACGCGATCTCAGGACCTCTTGGAGCGTGTGCGAGACAAGGTTC
GTGCACAATTGCGGGAGGTGTCTTGAAGGTTAAACCTCATGCACGACGGA
CGCATCGCGCGAAGGCCTGGTACTACTGAAACTTCTCTGTTCTATGTACA
TGTTGCTGGTTTGAGGACGAGGTGGAAGAGCTGGCTGCGATAGCAATCAC
TGCCGACTCGATGAACAAGACAGGGGGAAAGTTCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:180950..183884+

>mRNA_Ecto-sp6_S_contig99.18825.1 ID=mRNA_Ecto-sp6_S_contig99.18825.1|Name=mRNA_Ecto-sp6_S_contig99.18825.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:180950..183884+ (Ectocarpus species6 EcLAC_371)
ATGCCACTCTACGAGCGGTCGCAGGCCATTCGAGAGAAGGTGTTAGGTCC
GGAGCATCCGGAGGTGGCCACAACACTCAACAACCGGGCGGGTTTGTTGA
CCAGCCAGGGCAAGTATGCTGAGGGCAAGTCGCTCTATGAACGGTCACAA
GCCATACGAGAGAAGGTGCTAGGTCCGGAGCATGCGAGTATGGCCACAAC
GCTCAACCGTTGGGCGAACTTGCTGGAGAGCCAGGGCAAGCACGACGAGG
CGGATCCTCTAAACGTCCGGGCGCTCGAAATTCTGGGTGCAACGGTAGGC
CAAGAACACCCTAACTATGCATCAACGCTCAACAACCGGGCGGGGTTGTT
GGCAGCCCGGGAGGAATACACAGAGGCACTTCCACTGCTGGAAAGGGCTG
TCAGAATCTTTACGAAGAAGGTTTGGGGAAACCACGAAGACGCGATCTCA
GGACCTCTTGGAGCGTGTGCGAGACAAGGTTCGTGCACAATTGCGGGAGG
TGTCTTGAAGGTTAAACCTCATGCACGACGGACGCATCGCGCGAAGGCCT
GGTACTACTGA
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