mRNA_Ecto-sp6_S_contig99.18823.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18823.1
Unique NamemRNA_Ecto-sp6_S_contig99.18823.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18823.1 vs. uniprot
Match: D7FUM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM7_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 1.980e-76
Identity = 140/151 (92.72%), Postives = 141/151 (93.38%), Query Frame = 1 
Query:    1 MEITHSKGTLYPALQLSSFRVRRDSLPPAFELPQEVARAVNEPLPALRSTSVAREALRESETLLRENEREQRAAEEKIAXXXALMEEELTRIVEETEASQRKSKENAAKAKKVRDMMSLMGVSDRYAAEVRLEQCGWDYEKAATAFLETVN 453
            MEITHSKGTLYPALQLSSFRVRRDSLPPAFELPQEVARAVNEPLPALRSTSVAREALRESETLLRENEREQRAAEEKIA  X      LTRIVEETE  QRKSKENAAKAKKVRDMMSLMGVSDRYAAEVRLE+CGWDYEKAATAFLETVN
Sbjct:    1 MEITHSKGTLYPALQLSSFRVRRDSLPPAFELPQEVARAVNEPLPALRSTSVAREALRESETLLRENEREQRAAEEKIAREXXXXXXXLTRIVEETE--QRKSKENAAKAKKVRDMMSLMGVSDRYAAEVRLERCGWDYEKAATAFLETVN 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUM7_ECTSI1.980e-7692.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:164306..169332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1441
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002120.1
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350609.3653958-CDS-Ecto-sp6_S_contig99:164305..1643651682350609.3653958-CDS-Ecto-sp6_S_contig99:164305..164365Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 164306..164365 +
1682350609.3752198-CDS-Ecto-sp6_S_contig99:166350..1664551682350609.3752198-CDS-Ecto-sp6_S_contig99:166350..166455Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 166351..166455 +
1682350609.3846688-CDS-Ecto-sp6_S_contig99:167142..1672741682350609.3846688-CDS-Ecto-sp6_S_contig99:167142..167274Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 167143..167274 +
1682350609.394436-CDS-Ecto-sp6_S_contig99:168188..1683471682350609.394436-CDS-Ecto-sp6_S_contig99:168188..168347Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 168189..168347 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350609.4042206-UTR-Ecto-sp6_S_contig99:168347..1693321682350609.4042206-UTR-Ecto-sp6_S_contig99:168347..169332Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 168348..169332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18823.1prot_Ecto-sp6_S_contig99.18823.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 164306..168347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18823.1

>prot_Ecto-sp6_S_contig99.18823.1 ID=prot_Ecto-sp6_S_contig99.18823.1|Name=mRNA_Ecto-sp6_S_contig99.18823.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=152bp
MEITHSKGTLYPALQLSSFRVRRDSLPPAFELPQEVARAVNEPLPALRST
SVAREALRESETLLRENEREQRAAEEKIAREQALMEEELTRIVEETEASQ
RKSKENAAKAKKVRDMMSLMGVSDRYAAEVRLEQCGWDYEKAATAFLETV
N*
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mRNA from alignment at Ecto-sp6_S_contig99:164306..169332+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18823.1 ID=mRNA_Ecto-sp6_S_contig99.18823.1|Name=mRNA_Ecto-sp6_S_contig99.18823.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5027bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:164306..169332+ (Ectocarpus species6 EcLAC_371)
ATGGAAATCACCCACTCAAAGGGAACCTTGTACCCTGCTCTTCAGCTTTC
ATCGTTTCGGGTGAGAAAACATGCCCCCTTCAGATACAAGGAAAAATGGG
ACGCTCCTTGTTGCGGCTGATCACACGGCCTTTGTGTAGAACTTTGTGGA
ACGAAGGTTGTTTGCAGAGACACCGGCATGACGTGCTTGCGAAAAACTCG
CTCCGGTAGTGGGGGTTGAGGATCACCTGCTGGATATGGAACTGCCTTGT
ATCTCCTTCAGTGCTTGCGCTCAGAGAGAAACCAACAATGATGCCGGCAA
CGAGTCTTGGCTTGGACCGTGTGACATAGAGAAGGGGAAGCGGGAAGCGG
ACAGTTTCCTTGCTCACTGCGCTGGTAGTAGCGCTGCTGCTGCCGTGTAA
GCTGCTGTGTACTCCGTACACAAGTAGTTCAGAAAAATCTCTCCAACAAA
CACACCAATGCCCCCTGCTGCTTCGTTCTATGAAGGACACTCGGCGAGTA
TTCTACACACAGCAGTAGCCTACAAGGCAGGTTGATGCTCTCTTTTGATC
AGTTTGATGACCACGATGTCGGTGCGTGTAGTTCTAGAAGACTTGAGGAA
TAAGACAAGTACACGCACAGAAAGACCTACCCGTTTGAGATATACCCACA
GTAGTAGTCGAACGGGATGTGGTTGAGTCTTTTCAGTGAGTGGAGGGAAA
CCGGCTAGGTACTGGACTTATTTCGAGTCTTTTTAAGTCTATACACCGAT
GATTTATATCAGTGATGCCAGCTGGTGCTAAGTACAAAAACATCTCTAGG
TAACTTACACTTACAACACATCCCCTTGTAGTCTAGTTCTGGGTCTTAGT
TCTGGGTCAACGACAAAATTTTCGTGGAGAATCCCTCCGTTGTGTCGTGT
ATTGTAAAATGTAATCTTCACAGGGGACACGGCGCAGTGTCTATTGACAG
CTTGCTGGTTTGTTAGATTTTAGGAATAATATTGTAAAAATCATCATGGA
AGATGGAACGAAGGCTACAGCAGTACATAACTCGTTTTTCAAATCTACAG
ATTTTCGAATTTCACGGGCAGCAGTAGTTTAAGACTGGTCTTTACCCCGA
TTTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCGCATGCTCACTCAT
CTCTTTTGGGTAGCATACCTGCTGCTGCTGCAATATCAATATGGCATGTC
GGCATAATTCGCTACAGGCACACCTAAGCGTGACTATGCCTACAAGTACG
CCATGTTTTTTGTCCAAGTACCACCAGTTACACATATGCTCGTCGCAACT
CGTCTGTATCTCGCACATGTCGCACATGCCCCTCCACGTACAGCAGTAGC
TGCGAGTGCATCGCGCTGCCGGCATCTAGCTTGTTCGAAGCCTGCGACTT
GGGTAGTCTACACCTCCGATGTGTTGCGCGCTTGGAAATCTGATAAGTAC
CGTGGAGGGCGCGGGACGGATACCGGCCTCCGGAATATACTCGGGGCAAG
ACCTTGAATCTCGCTCTGCTTCACCGCTACCTTGACATCGATGCAGAGTA
TTGTAGTGTCATGATGAAATGTGGCCGCCATTCACTGCAGATCGCTAAAC
CGAACTAACAATTCTATAGCATAGCAGTTATACTGCCGGAGTGCCGTTGC
GACACGTGATTTTGTGGTCGCTAAACAGGGCATGTCGCTAAACACGGGTG
AGCTAAACCGGGAACCCCACTGAAAGGATCAGTTGCGTCGTCACCAGTTT
GGTGCTGCGAGGGGGTGACTTTGTTTGGGCCTCCGTATCGCCGGGGGATG
GAATATTTGCTCCAAATCACACCCCTGTGACATGCTGCCTCCTGAGATGG
GGCGGCGGGTGCCCAGGCGAATCATGCTCCATCACATGGTCTCCTGGGAA
CGCCGTAGTATGCGACGTCGCTCGTGTGCTTTGCGCGGCCACAGCTGATG
CCGCATTTGGTACACAACCAGCGCCTATAACGTTCCTCAGAAGTTGAAAC
CATGTTTCCGTGTGCCTTGCGACTGCTTGTGCCGCCAACTATTAGGTGAG
GCGAGACAGCTTGCCTCCAGCTTTCGAGCTTCCGCAGGAAGTGGCCCGCG
CCGTCAACGAGCCTCTGCCAGCCCTACGATCGACGTCGGTGGCGAGGGAA
GTGAGCAATAACAGACTGCTGACCGCGCGTTTTACGGGAAAGTTGTGATG
GGGTCTTGTAGCTTTTGTTTCGGGTTCTGGCGTTGATGTTGCGATTTGTT
CACTGGGTGATTGGATTGTGCCGTTACTGCGTTGGTTTCCGTGAACAGTA
AACACCTACCTAAATCCCACCCAGGACAACCACTTCAACGTCCCTTACAG
ACCCTCCAGTATTCCAGTATCACGATGAGCGGAGTACCAAATTTCACGTC
CCTGCGTCTACTAACATCTGTTTTTCGCGCCTTTTCGTCGATACAATCAC
TTCAACAGACTTCAACACCCGTTCGACAGGGTTTGCTCATGTTTCCAAGA
CATGTTTGCTTTCTTGCGACAGCAAGTGCAGTTGAAGTGGTCGCGAAGTG
CCAACGCATTCAGGAGGGAGGCAGATCCTCACGCCTGGTGCCGTAGCTCT
TGCCCCTCGCTTTCTGTCGTTACTTTACTTTCATCACCGCACGTGCCTTC
CACCATTAGTTCGGTCGCTCTTGATGTACTTCCTGTTGGCTATTCGGGCA
TGTACCCCCCCACCCCCCACCCCTACCTACTCCCGGGGCCTCCCATTTGC
ATGCAAACCCTACCCCCACCCCTACGTACTCCCGGGGCCCCCATTTCGCC
TGATTTCCCTCTGTACTGGTTTTCGGGGGTCCCTCAGGCTCTGAGAGAAA
GCGAGACGCTCTTGAGGGAGAACGAGAGGGAGCAAAGGGCCGCCGAGGAG
AAGATCGCTAGGGAGCAAGCGTTGATGGAGGAGGAGCTCACCCGCATCGT
TGAGGAGACAGAGGCGAGTGTTGTTTTGCGGCGCGACATCCACGTAGACA
AAACGTGTATTTCAACATCTATTCAATGTAAAGCCGGAATGAGCGGCACG
CTGCCCTCTTCTCGTCTCCCGCAGAATTTTGCGCACCACGACCAAGGGTT
TGCTATGTGTTTCCCTGCACCAATACTGCCCGTGTTTGTCCCTTATCCCT
CATCTAGCCCCAGGCATTGCATTCCTTCGTTTAGGCGTCCTGTTCAACGC
ACCTTACATATAAATAGCGCAACTGATGCATGCTTGGAAATTTCGCATTT
TTTCTTGTGTTTTTTTTTTGCGTGAGGTCGGACGGCTATGTGTATACATA
CCTATATGATGCTAGGTTTAATGTGGGGTTTCTCATCGGGCATCCCAAGT
CGGTAGCGATGAAGCCCACGTGCATTGAATGAACCATCGAGGTTCATCTT
CTCGCCTTCGCGTCCGAATGTGATGGCGGGTGTTAAATACTGGTGTATTT
TTTTGTCGTTCCATATCTCGGTTAAATATTTTGGCGTCATAGACGCAGGA
GAGTGGGACAGCTCAACCCTTGCATGACTTGAGGTGCTAATGTTGTTGTC
CCCCCCAATAATCGGCTCTCTGTTGGAGGACGAAAGCTCCAATTTCTTGC
ATGTGTGCACACAACGGCACGCACATATCACGGCGGCTGCGTCGCTAGTG
TAGTCACACAAGGGCAATCACCCCCTCTAGAAGTTGTTGGCAGTGTCTCT
GTAAGGAGTAGGGACGACCCTCTGGCCAACAATCGAGACAGCGGGCAAGC
ACTCGAGGAACCCCCCCCCCCTCCTCCCTGTGAGAACAATGCGCGGTCCT
TCCGAGGATGCTTGGCCAATGGTCTAACCGGTAGGGCACGCCAAACATGA
ACGCGCGCCCCCGCCCGCCCCCCAATTTTACAGCAAAGGAAATCGAAGGA
AAACGCGGCGAAGGCTAAGAAGGTCAGAGACATGATGTCTCTGATGGGGG
TGTCTGACCGATATGCTGCAGAGGTACGGCTGGAGCAGTGCGGGTGGGAC
TACGAGAAAGCCGCCACGGCCTTCCTCGAAACCGTCAATTAAGAGTCTTC
GTCGAACGCCTTGCCGTACATACCCAACAGGACTCTCGGGCGGTTGGGTC
CATGTGTAGCTGTCGACGACGGGATGAAAAACCGTCAGTTTTGTTGGTGT
TTTCTAAATCTGTGTTGTTGTTTGAAATAGTGGTGTGTCACTTCCCGTAC
TAGTAGCGTTGGTGTGAGGTCTGATGTTGTTATTGGGTGCTTGTGATGGC
ACCAGAATTTGTGTTGTTGGTTGTTTGGGCGTGTTGGCTTCGACTCGAGC
GACGGGGCGTATACAAGAGAACATGGGCAAGTTTGCCAGGGCTGTACATG
AGTTGGATTCGTCGCCTCTTGTTTGGTCGCTTGTACATTCGGCGACGCCC
TAGGTCACCTCCAGCATACAGTAGCACCAGACCGACTTCAACCGGCGGCG
CAACCTGCTGCTTCCAACGCAGGGTTGGGAGGTGTAGAGGGGCAGGGAAG
GAATAGCAAGTGGTTTTGTGTTTTTTTGCGGTGGATAGTACATGGTTGTC
TTTTCGTTGGAAGTCCTAGCGGGCTCCTCACAGAAGCGGAACCATTTTTT
TTGCGATTCGGCGTGTTCCTGTACTAAATGGTAGGTGTTTTGGTACAAAT
AGTTCAAGCGATTCAGGCGCCACGATGAGGGAAGCAAAGGATAAAGGGTA
CAATTACATAGAACCGCATTCATGCGGGGGTGCGAAAGAACCTCTCCGAG
AGTTCCTTGAGCGCAGGCTTGCTTCATACCAACGCTTACGGTTCTCTATA
TCTCCGGTCTCGGTGTACAGCAGTAGTACTGCTGCATGTCATAACAGTGG
AAGCTTTCAAGAAATATGGTCCGTTACTTGATGGCGACAACGTGCTATGT
AGCATGAGAAATACTCGCAATCGAAGGAGTGTCCCCAAGGCAAATCGGGG
CGTGGGCCGAGACGCCTGCATCTTCTTGAGGGAGAAAAATCGTGTGCGGT
ATGAAGCTCTACTGCTGTGGGTTCGGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:164306..169332+

>mRNA_Ecto-sp6_S_contig99.18823.1 ID=mRNA_Ecto-sp6_S_contig99.18823.1|Name=mRNA_Ecto-sp6_S_contig99.18823.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:164306..169332+ (Ectocarpus species6 EcLAC_371)
ATGGAAATCACCCACTCAAAGGGAACCTTGTACCCTGCTCTTCAGCTTTC
ATCGTTTCGGGTGAGGCGAGACAGCTTGCCTCCAGCTTTCGAGCTTCCGC
AGGAAGTGGCCCGCGCCGTCAACGAGCCTCTGCCAGCCCTACGATCGACG
TCGGTGGCGAGGGAAGCTCTGAGAGAAAGCGAGACGCTCTTGAGGGAGAA
CGAGAGGGAGCAAAGGGCCGCCGAGGAGAAGATCGCTAGGGAGCAAGCGT
TGATGGAGGAGGAGCTCACCCGCATCGTTGAGGAGACAGAGGCGAGTCAA
AGGAAATCGAAGGAAAACGCGGCGAAGGCTAAGAAGGTCAGAGACATGAT
GTCTCTGATGGGGGTGTCTGACCGATATGCTGCAGAGGTACGGCTGGAGC
AGTGCGGGTGGGACTACGAGAAAGCCGCCACGGCCTTCCTCGAAACCGTC
AATTAA
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