mRNA_Ecto-sp6_S_contig99.18811.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18811.1
Unique NamemRNA_Ecto-sp6_S_contig99.18811.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18811.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 6.120e-39
Identity = 62/106 (58.49%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    4 DYLSS-GVRRPDWVVTSPPYKGAIKYVKAAMAVAEKGVALKLPLSFMEPCGDRGVWLQKNPPSACIFLRRATYTPAHIMMGEFWGVWRK---NESREVPTRLVFRP 309
            DYL++   ++PDWVV SPPYKGA+ +VKAA+ VA++GVALKLPLSF+EPC DR  WLQ+NPPS C+ + RA Y PAH+ +GEFWGVW       S    T+L F P
Sbjct:   26 DYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPAHVRVGEFWGVWYPPGGGSSIGDSTKLSFLP 131
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BLAST of mRNA_Ecto-sp6_S_contig99.18811.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.880e-38
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:   25 RRPDWVVTSPPYKGAIKYVKAAMAVAEKGVALKLPLSFMEPCGDRGVWLQKNPPSACIFLRRATYTPAH-IMMGEFWGVWRKNES---REVPTRLVFRP 309
            ++PDWVVTSPPYKGA+ +VKAA+AVA KGVALKLPLSF+EPC DRG WL  NPP+ CIFLRRA YT AH + +GEFWGVW  +     +   +RLVF P
Sbjct:  203 KQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWYTDGGCCGKSGGSRLVFCP 301
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BLAST of mRNA_Ecto-sp6_S_contig99.18811.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.390e-37
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:   25 RRPDWVVTSPPYKGAIKYVKAAMAVAEKGVALKLPLSFMEPCGDRGVWLQKNPPSACIFLRRATYTPAHIMMGEFWGVWR---KNESREVPTRLVFRP 309
            ++PDWVVT PPY GA+ +VKAA+ VA+KGVALKLPLSF+EPC DR  WLQ NPP+ C+ + RA Y PAH+ +GEFWGVW       S    T+L+F P
Sbjct:   75 QQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPGSGYSSSDSTKLLFVP 172
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BLAST of mRNA_Ecto-sp6_S_contig99.18811.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.100e-36
Identity = 54/79 (68.35%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:   25 RRPDWVVTSPPYKGAIKYVKAAMAVAEKGVALKLPLSFMEPCGDRGVWLQKNPPSACIFLRRATYTPAHIMMGEFWGVW 261
            ++PDW+VTSPPYKGA+ +VKAA+ VA+KGVALKLPLSF+EPC DR  WLQ NPP+ C+ + RA Y PAH+ +GEFWGVW
Sbjct:  145 QQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVW 223
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BLAST of mRNA_Ecto-sp6_S_contig99.18811.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.370e-36
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = 1 
Query:    4 DYLSS-GVRRPDWVVTSPPYKGAIKYVKAAMAVAEKGVALKLPLSFMEPCGDRGVWLQKNPPSACIFLRRATYTPAH-IMMGEFWGVWRKNE-SREVPTRLVFRP 309
            D+L++   +RP+WVVTSPPY  A+ +VKAAM++A KGVA K+P+ F+EPC DRG WLQ NPPS C+FLRRA YT A+    GEFWGVW   E S    TRLVF P
Sbjct:   44 DFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQEMSCRNRTRLVFCP 148
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BLAST of mRNA_Ecto-sp6_S_contig99.18811.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.710e-36
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:   25 RRPDWVVTSPPYKGAIKYVKAAMAVAEKGVALKLPLSFMEPCGDRGVWLQKNPPSACIFLRRATYTPAH-IMMGEFWGVWRKNES--REVPTRLVFRP 309
            ++PDWVVTSPPYKGA+ +VKA +AVA KGVAL+LPLSF +PC DRG WL  NPP  C FLRRA YT AH + +GEFWGVW  +    +   +RLVF P
Sbjct:   35 KQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAHHVKVGEFWGVWYTDGGCGKSGGSRLVFCP 132
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BLAST of mRNA_Ecto-sp6_S_contig99.18811.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 4.180e-36
Identity = 61/105 (58.10%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:    4 DYLSSGVRR-PDWVVTSPPYKGAIKYVKAAMAVAEKGVALKLPLSFMEPCGDRGVWLQKNPPSACIFLRRATYTPAHIMMGEFWGVWRKNESREVP---TRLVFR 306
            ++L+ G ++ P+ VV SPPYKGA+K+VKAA+ VA+ GVALK  LSF+EPC DR  WL+ NPP+ C+FLRRA+YTP H+MMGEFWGVW            T+LVFR
Sbjct:  191 EFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYTPEHVMMGEFWGVWYCTGGDRTAVGGTKLVFR 295
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BLAST of mRNA_Ecto-sp6_S_contig99.18811.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 4.890e-36
Identity = 59/106 (55.66%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    4 DYLSS-GVRRPDWVVTSPPYKGAIKYVKAAMAVAEKGVALKLPLSFMEPCGDRGVWLQKNPPSACIFLRRATYTPAHIMMGEFWGVWR---KNESREVPTRLVFRP 309
            DYL++   ++PDWVV+SPPY+GA+ +VKAA+ VA++GVALKLPLSF+EPC DR VWLQ NPP+ C+ + RA Y PA + +GEF GVW       S    T+L+F P
Sbjct:   27 DYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARYQPALVRVGEFRGVWYPPGSGSSSSDSTKLLFLP 132
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BLAST of mRNA_Ecto-sp6_S_contig99.18811.1 vs. uniprot
Match: A0A6H5K9B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.410e-35
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:   31 PDWVVTSPPYKGAIKYVKAAMAVAEKGVALKLPLSFMEPCGDRGVWLQKNPPSACIFLRRATYTPAHIMMGEFWGVW 261
            PDWVVTSPPYKGA+ +VKAA+ VA++ VALKLPLSF+EPC DR  WLQ NPP+ C+ + RA Y PAH+ +GEFWGVW
Sbjct:   57 PDWVVTSPPYKGALGFVKAALTVAKESVALKLPLSFLEPCADREGWLQANPPALCMMMSRARYQPAHVRVGEFWGVW 133
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18811.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.610e-35
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = 1 
Query:    4 DYLSS-GVRRPDWVVTSPPYKGAIKYVKAAMAVAEKGVALKLPLSFMEPCGDRGVWLQKNPPSACIFLRRATYTPAH-IMMGEFWGVWRKNE-SREVPTRLVFRP 309
            D+L++   +RP+WVVTSPPY  A+ +VKAAM++A KGV  K+P+S +EPC DRG WLQ NPPS C+FLRRA YT A+   MGEFWGVW   E S    TRLVF P
Sbjct:  151 DFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVWYTQEVSCRNKTRLVFCP 255
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KAM1_9PHAE6.120e-3958.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK3_9PHAE3.880e-3865.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSV3_9PHAE3.390e-3759.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K049_9PHAE1.100e-3668.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI1.370e-3660.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K929_9PHAE1.710e-3662.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE4.180e-3658.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT40_9PHAE4.890e-3655.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9B9_9PHAE1.410e-3568.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU02_9PHAE3.610e-3560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:14526..14837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350608.6428037-CDS-Ecto-sp6_S_contig99:14525..148371682350608.6428037-CDS-Ecto-sp6_S_contig99:14525..14837Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 14526..14837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18811.1prot_Ecto-sp6_S_contig99.18811.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 14526..14837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18811.1

>prot_Ecto-sp6_S_contig99.18811.1 ID=prot_Ecto-sp6_S_contig99.18811.1|Name=mRNA_Ecto-sp6_S_contig99.18811.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=104bp
MDYLSSGVRRPDWVVTSPPYKGAIKYVKAAMAVAEKGVALKLPLSFMEPC
GDRGVWLQKNPPSACIFLRRATYTPAHIMMGEFWGVWRKNESREVPTRLV
FRP*
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mRNA from alignment at Ecto-sp6_S_contig99:14526..14837-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18811.1 ID=mRNA_Ecto-sp6_S_contig99.18811.1|Name=mRNA_Ecto-sp6_S_contig99.18811.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=312bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:14526..14837- (Ectocarpus species6 EcLAC_371)
ATGGATTACCTCTCCAGTGGCGTTCGGCGTCCAGACTGGGTTGTCACCAG
CCCCCCTTACAAAGGAGCAATCAAATATGTCAAGGCGGCGATGGCGGTAG
CTGAAAAAGGCGTGGCCCTGAAGTTGCCGTTGTCTTTCATGGAGCCTTGT
GGAGATCGGGGTGTGTGGCTTCAAAAAAACCCGCCCTCCGCGTGCATTTT
CTTGAGGAGGGCAACGTACACGCCGGCACACATCATGATGGGGGAATTTT
GGGGAGTGTGGCGTAAGAATGAATCGCGTGAAGTTCCGACGAGGCTTGTC
TTTCGCCCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:14526..14837-

>mRNA_Ecto-sp6_S_contig99.18811.1 ID=mRNA_Ecto-sp6_S_contig99.18811.1|Name=mRNA_Ecto-sp6_S_contig99.18811.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:14526..14837- (Ectocarpus species6 EcLAC_371)
ATGGATTACCTCTCCAGTGGCGTTCGGCGTCCAGACTGGGTTGTCACCAG
CCCCCCTTACAAAGGAGCAATCAAATATGTCAAGGCGGCGATGGCGGTAG
CTGAAAAAGGCGTGGCCCTGAAGTTGCCGTTGTCTTTCATGGAGCCTTGT
GGAGATCGGGGTGTGTGGCTTCAAAAAAACCCGCCCTCCGCGTGCATTTT
CTTGAGGAGGGCAACGTACACGCCGGCACACATCATGATGGGGGAATTTT
GGGGAGTGTGGCGTAAGAATGAATCGCGTGAAGTTCCGACGAGGCTTGTC
TTTCGCCCCTGA
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