mRNA_Ecto-sp6_S_contig99.18810.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18810.1
Unique NamemRNA_Ecto-sp6_S_contig99.18810.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18810.1 vs. uniprot
Match: D7G0G8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G8_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 2.770e-85
Identity = 129/137 (94.16%), Postives = 132/137 (96.35%), Query Frame = 2 
Query:  284 VGRLCLIALASGALNERCSTGGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFDVKEHDMVLKLAGREWTENISADVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHPAASVSPVGGKWNKRY 694
            +G    IALASGAL+ERCSTGGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFD+KEHDMVLKLAGREWTENIS DVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHPAASVSPVGGKWNKRY
Sbjct:   95 LGACVWIALASGALSERCSTGGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGREWTENISPDVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHPAASVSPVGGKWNKRY 231
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BLAST of mRNA_Ecto-sp6_S_contig99.18810.1 vs. uniprot
Match: A0A6H5JT31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT31_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 6.700e-70
Identity = 113/131 (86.26%), Postives = 120/131 (91.60%), Query Frame = 2 
Query:  302 IALASGALNERCSTGGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFDVKEHDMVLKLAGREWTENISADVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHPAASVSPVGGKWNKRY 694
            IALASGALN RCSTGGAALALRT AMRMALLK  EFLS DGYLAEYRS DLFD KEHDMV+KLAGR W  N+SADVAR+YYLCA+R+NCGPFKYSQQAV+PWAAEVLGLKVRVFHPAASVS VGGKWNK+Y
Sbjct:  109 IALASGALNTRCSTGGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGRVWPMNMSADVARLYYLCAIRSNCGPFKYSQQAVLPWAAEVLGLKVRVFHPAASVSLVGGKWNKKY 239
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BLAST of mRNA_Ecto-sp6_S_contig99.18810.1 vs. uniprot
Match: D7FV00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV00_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.150e-50
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:    1 EMLARIRDAIDDLFAKRSGERAWEKGVTEAEVRHLVSMAAGLPDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGIPL 273
            EM ARIRDAI DLFA+RSGERAW KGV EA+VRHLVS AA LP PFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVG+P+
Sbjct:    2 EMFARIRDAIGDLFARRSGERAWGKGVNEAKVRHLVSTAASLPGPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGVPV 92
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BLAST of mRNA_Ecto-sp6_S_contig99.18810.1 vs. uniprot
Match: D8LEN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN6_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.800e-11
Identity = 40/78 (51.28%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:  112 MAAGLPDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGIPLQTTGWALVFDRPCFRGAERTVFHR 345
            MAAGLPDPFAGFKINP RQGDTGCFNLP     +AS    G++   G RV + L    W  +F         R V HR
Sbjct:    1 MAAGLPDPFAGFKINPTRQGDTGCFNLP-----VASSW--GSSGGLGARVNLFLTMIRW--IFSTALRDWTGRLVSHR 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0G8_ECTSI2.770e-8594.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT31_9PHAE6.700e-7086.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV00_ECTSI3.150e-5087.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEN6_ECTSI3.800e-1151.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:5445..6657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size694
Hectar predicted targeting categoryother localisation
Exons3
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350608.5720692-UTR-Ecto-sp6_S_contig99:5444..54471682350608.5720692-UTR-Ecto-sp6_S_contig99:5444..5447Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 5445..5447 +
1682350608.6047037-UTR-Ecto-sp6_S_contig99:6159..63891682350608.6047037-UTR-Ecto-sp6_S_contig99:6159..6389Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 6160..6389 +
1682350608.6144824-UTR-Ecto-sp6_S_contig99:6613..66571682350608.6144824-UTR-Ecto-sp6_S_contig99:6613..6657Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig99 6614..6657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350608.5833724-CDS-Ecto-sp6_S_contig99:5447..56121682350608.5833724-CDS-Ecto-sp6_S_contig99:5447..5612Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 5448..5612 +
1682350608.5947604-CDS-Ecto-sp6_S_contig99:5907..61591682350608.5947604-CDS-Ecto-sp6_S_contig99:5907..6159Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 5908..6159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18810.1prot_Ecto-sp6_S_contig99.18810.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 5448..6159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18810.1

>prot_Ecto-sp6_S_contig99.18810.1 ID=prot_Ecto-sp6_S_contig99.18810.1|Name=mRNA_Ecto-sp6_S_contig99.18810.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=139bp
MLARIRDAIDDLFAKRSGERAWEKGVTEAEVRHLVSMAAGLPDPFAGFKI
NPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGIPLQTTGWALVFD
RPCFRGAERTVFHRGCCACPPYSSHADGAAEEPRVPEP*
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mRNA from alignment at Ecto-sp6_S_contig99:5445..6657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18810.1 ID=mRNA_Ecto-sp6_S_contig99.18810.1|Name=mRNA_Ecto-sp6_S_contig99.18810.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1213bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:5445..6657+ (Ectocarpus species6 EcLAC_371)
GAGATGTTGGCCAGGATCAGAGACGCCATCGATGATTTATTTGCGAAGAG
AAGTGGTGAACGCGCGTGGGAAAAAGGCGTGACTGAGGCAGAGGTCCGAC
ACCTAGTTTCTATGGCTGCCGGTTTGCCCGACCCCTTTGCCGGATTCAAG
ATAAACCCCATCCGACAGGTGAGCCCCGCCAGGGAAAATAATGTTGGAAT
GCAGTTTTTTATGGGCAAGGGCGCGACACTTCATGTTTTAGCACGAAAGC
AGGAACCGACGTAGCACGTCCCTCCCATTGGCAAAAAAAAAACTCTTGTA
CGCCCGTACGAAGCGTCGGAAAGGGGGTTGTTCTCTGCAGCGTTTTTTTG
TTTTTTTTCTCTGGTGAGGTAGGAATGCCAGTCGAAAAACATGAAACCAC
AGCCAGCCGTGTGCTCCTGGACATAATTTTTTCCGCCACGAAACCACCCC
GATGATTACGTAGGGTGATACGGGATGTTTCAACCTTCCTGAGGACACCG
ACGAACTTGCCAGTCGGTGCTTGGAAGGGGCTGCGACATCCGATGGTGGG
CGGGTGGGGATTCCGTTGCAAACGACGGGTTGGGCGCTTGTGTTTGATCG
CCCTTGCTTCCGGGGCGCTGAACGAACGGTGTTCCACCGGGGGTGCTGCG
CTTGCCCTCCGTACAGCAGCCATGCGGATGGCGCTGCTGAAGAGCCCCGA
GTTCCTGAGCCGTGACGGGTACCTTGCCGAGTACCGTTCTCCCGACCTCT
TCGATGTAAAGGAACACGACATGGTGCTTAAGCTTGCAGGTCGTGAGTGG
ACGGAGAACATATCGGCGGACGTGGCCCGCATGTACTACCTTTGTGCTGT
CAGGAACAACTGCGGTCCGTTCAAGTATAGCCAGCAGGCGGTCATACCAT
GGGCAGCGGAGGTGCTTGGCTTGAAAGTGCGGGTGTTTCACCCAGGTAAG
GAATTGTTACCGACACGCGGAGATGGAGTCCTGGGGAATAATAATAACTG
GGAAGACGCGGATATTTAGCTCGAAAGTACGAGTGTGTCACCCAGGCCAT
CTTGCAGAGTTTCGGATGTGTGCACATGTGAGTCGTGCGGGGGAATTCTG
AGGCAGTACCCGGCAAACAACACAAACCTGGATCCCCATACGTGCTTTGG
CCGTGTTGTTGTGCTGCAGCCGCTTCAGTTTCGCCGGTTGGCGGAAAGTG
GAACAAGCGGTAT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:5445..6657+

>mRNA_Ecto-sp6_S_contig99.18810.1 ID=mRNA_Ecto-sp6_S_contig99.18810.1|Name=mRNA_Ecto-sp6_S_contig99.18810.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:5445..6657+ (Ectocarpus species6 EcLAC_371)
ATGTTGGCCAGGATCAGAGACGCCATCGATGATTTATTTGCGAAGAGAAG
TGGTGAACGCGCGTGGGAAAAAGGCGTGACTGAGGCAGAGGTCCGACACC
TAGTTTCTATGGCTGCCGGTTTGCCCGACCCCTTTGCCGGATTCAAGATA
AACCCCATCCGACAGGGTGATACGGGATGTTTCAACCTTCCTGAGGACAC
CGACGAACTTGCCAGTCGGTGCTTGGAAGGGGCTGCGACATCCGATGGTG
GGCGGGTGGGGATTCCGTTGCAAACGACGGGTTGGGCGCTTGTGTTTGAT
CGCCCTTGCTTCCGGGGCGCTGAACGAACGGTGTTCCACCGGGGGTGCTG
CGCTTGCCCTCCGTACAGCAGCCATGCGGATGGCGCTGCTGAAGAGCCCC
GAGTTCCTGAGCCGTGA
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