mRNA_Ecto-sp6_S_contig98.18807.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18807.1
Unique NamemRNA_Ecto-sp6_S_contig98.18807.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18807.1 vs. uniprot
Match: D8LEL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL2_ECTSI)

HSP 1 Score: 402 bits (1034), Expect = 6.000e-137
Identity = 224/235 (95.32%), Postives = 229/235 (97.45%), Query Frame = 1 
Query:  721 MRGYYVGPLLDSSFDLLMLREPVADPTDQSLYVNRTRDKIEQRKALREQQHRGGCAGGVGSGGXXXXXXXXXXXXXXXXSRXSGHGQRGAVENVAAAAGNSAGEQTSAAPSAAPEKWTPVEPLRAGDLVSPITTNLEREHVMAERRRLYQIDSDFAARKNARVAGCGRSNYSRSKMLTHKTKNAAFTKELLKQSPGVGGVAAKCPRGLKSHFLGLQNFEYDWGGGGRRGGGMTGT 1425
            MRGYYVGPLLDSSFDLLMLREPV DPTDQS+YVNRTRDKIEQR+ALREQQHRGGCAGG GSGGXXXXXXXXXXXXXXXX  X  HGQRGAVENVAAAAGNSAGE+TSAAPSAAPEKWTPVEPLRAGDLVSPITTNLEREHVMAERRRLYQIDSDFAARKNARVAGCGRSNYSRSKMLTHKTKNAAFTKELLKQ+PGVGGVAAKCPRGLKSHFLGLQNFEYDWGGGGRRGGG+TGT
Sbjct:    1 MRGYYVGPLLDSSFDLLMLREPVVDPTDQSVYVNRTRDKIEQRRALREQQHRGGCAGGAGSGGXXXXXXXXXXXXXXXXXXXXXHGQRGAVENVAAAAGNSAGEKTSAAPSAAPEKWTPVEPLRAGDLVSPITTNLEREHVMAERRRLYQIDSDFAARKNARVAGCGRSNYSRSKMLTHKTKNAAFTKELLKQAPGVGGVAAKCPRGLKSHFLGLQNFEYDWGGGGRRGGGVTGT 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEL2_ECTSI6.000e-13795.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:624094..627220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1428
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_002590.1
Cds size1428
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350607.7312694-CDS-Ecto-sp6_S_contig98:624093..6251981682350607.7312694-CDS-Ecto-sp6_S_contig98:624093..625198Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 624094..625198 +
1682350607.7418566-CDS-Ecto-sp6_S_contig98:625539..6256121682350607.7418566-CDS-Ecto-sp6_S_contig98:625539..625612Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 625540..625612 +
1682350607.752774-CDS-Ecto-sp6_S_contig98:626527..6265941682350607.752774-CDS-Ecto-sp6_S_contig98:626527..626594Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 626528..626594 +
1682350607.7607384-CDS-Ecto-sp6_S_contig98:627037..6272201682350607.7607384-CDS-Ecto-sp6_S_contig98:627037..627220Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 627038..627220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18807.1prot_Ecto-sp6_S_contig98.18807.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 624094..627220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18807.1

>prot_Ecto-sp6_S_contig98.18807.1 ID=prot_Ecto-sp6_S_contig98.18807.1|Name=mRNA_Ecto-sp6_S_contig98.18807.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=476bp
PPFEVSGDNSTTTEGPGEGLLGLDLAFNCIGRAGMAALHRALASDATSVL
FLELRGNETKGSTERRDTTSPEPCSNRSDDNGGGGSGVNNNSNGIHTNSR
GMTESNTHDDDDDISNSNPVETPPLEVLLEDIGNVCAERRRDRRLQNELL
RPHHRRCSAAADRQEPRASPSSPPRHTSVGQPSTPQSTVLYPGRDRRPAT
ATATAAFGVSGDTRDIGSAPRLPGHGNSVIKPRPLEGALPMRGYYVGPLL
DSSFDLLMLREPVADPTDQSLYVNRTRDKIEQRKALREQQHRGGCAGGVG
SGGVGGAVGGGDRGGGGSNSRGSGHGQRGAVENVAAAAGNSAGEQTSAAP
SAAPEKWTPVEPLRAGDLVSPITTNLEREHVMAERRRLYQIDSDFAARKN
ARVAGCGRSNYSRSKMLTHKTKNAAFTKELLKQSPGVGGVAAKCPRGLKS
HFLGLQNFEYDWGGGGRRGGGMTGT*
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mRNA from alignment at Ecto-sp6_S_contig98:624094..627220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18807.1 ID=mRNA_Ecto-sp6_S_contig98.18807.1|Name=mRNA_Ecto-sp6_S_contig98.18807.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3127bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:624094..627220+ (Ectocarpus species6 EcLAC_371)
CCCCCGTTCGAAGTATCGGGCGATAATTCGACGACGACGGAAGGACCAGG
GGAGGGCTTGTTGGGTCTCGATCTGGCGTTCAACTGTATCGGCCGCGCGG
GGATGGCCGCTCTTCACCGCGCTCTCGCTTCCGACGCCACGAGCGTCTTG
TTCTTGGAGCTTCGGGGTAACGAAACCAAAGGAAGCACCGAACGCCGTGA
CACCACCAGCCCAGAACCCTGCTCCAACCGCAGCGACGACAACGGCGGCG
GCGGTAGTGGCGTCAACAACAACAGCAACGGCATCCACACCAACAGCAGG
GGTATGACAGAGAGCAACACACACGACGACGACGACGACATCAGCAACAG
CAACCCCGTGGAAACCCCGCCTCTCGAGGTGCTACTGGAAGATATCGGCA
ACGTCTGCGCCGAGCGGAGGCGAGACCGACGGCTGCAAAACGAGCTTCTC
CGACCGCACCACCGCCGCTGCTCCGCGGCAGCAGACCGACAAGAACCGCG
CGCATCACCGTCTTCGCCACCAAGGCACACATCAGTAGGACAACCATCCA
CACCTCAGAGCACCGTTCTCTATCCCGGCCGGGACCGACGGCCAGCCACC
GCAACGGCCACAGCAGCGTTTGGAGTCAGTGGTGACACACGCGACATCGG
CAGTGCTCCGCGCCTCCCCGGCCATGGCAACAGCGTTATCAAGCCGAGGC
CGCTAGAGGGGGCGCTGCCCATGCGCGGCTACTACGTCGGCCCGCTTCTG
GACAGCTCCTTCGACCTCCTCATGCTCAGGGAGCCGGTGGCAGACCCTAC
CGACCAGTCCCTCTACGTCAACCGGACCAGGGACAAGATCGAGCAGAGAA
AAGCGCTCCGAGAACAGCAGCATCGGGGCGGCTGTGCTGGTGGTGTTGGG
AGCGGTGGCGTTGGAGGTGCCGTTGGAGGAGGAGACCGCGGCGGTGGCGG
GAGCAATAGCAGAGGCAGTGGACATGGCCAGCGGGGTGCTGTGGAGAATG
TGGCCGCCGCTGCTGGAAACAGTGCCGGGGAGCAGACCTCAGCGGCGCCC
TCAGCGGCGCCGGAGAAATGGACGCCCGTTGAACCGTTGAGGGCAGGAGA
CCTAGGTAAGAGTGAAGAGAAAGAAGACCATCTCCAGTCACTTTACCCCG
TTTGTCGCGTGCCTGTGAGGCCTACGCATCGACATACACACACTTGCAGA
GCCGAGCGAGTCACTTGTTCTGACTCACGCCCCCGCCCCACCTACTACCG
TAGGGGGTTCGCCTTGGTTTGTGGGGACAGCGATCCAAGTATGTCCGGTG
TTCTCTATTCACTCTGCCCTCCTTTCGTGGAATGGGTGATTATGTCGATG
CACACCTGCAAGTCCGTGGCATACGAATATTCACACCCAATCGTTTGCCC
AAAGCGAGCAATAATTCTTCATTTCCCGCTGTTCCCTTGTTACCAGTGTC
CCCTATAACCACCAACCTGGAACGGGAGCACGTGATGGCGGAGAGGCGCC
GCCTCTATCAAATAGACAGGTAAAATTCGAGAAGAAAAAAGGAGCAGTCG
ATACAACAACCGCGTCAACCACACAGAAAGCTGACGTGCTTACCCCGGAC
ATTTTTTTCTCAGCGGCGAAGACCGAATCGTGCGTTCCGTCGACCCCAAG
AGCAGCGGCAACATACGACAAAAACCATGGCATGGAAACCATACGTACAC
ACGCGTAGCAATGTGTCGCAGCCCATTGTCCAGCTGTGTTGGCTCTTGTT
GTACCTTTCTTGTCGGAGTATCATACGTTCTCCCCTGACGTTTTCCCTTC
ACACATCGTAAGTGACGTTATCGTCGTGTTTATGATCTGTTCGGCAACCC
TGAAAGACAAATGGGTGGTATATCGTCCGATGACTGGTATTCTTTCTGGT
CGTTGTCTCAACATCGGTGCAAAATAATGTTGAGAGGGGGCTTGTACGAG
TTTCCGCGAAGAAGAAGGCCGACAGGTCCCGGGGACAGTAAATCTCCTGT
GCGTAAAATTCATCAAGATAGTACGAACGTCAAGCGCGTACGCGTAAGGG
TAGATTGCAGCGGTCGATGTAGCTCCTTCCATCGCCGTATTTTTTCAAAG
ACGCAAGTTTTTCCGCCTTGAGTTCGCCACGAGAGCGGGCGAACTACGTG
CACATGTAGGGTCGGTAGTACAAAACATGAATTGACATAGAGTGCCATGT
TCTTCCACATGGCAGGACGGCATGCGAGCACGTTGCAGATATCGCGAGTG
TGTCTAGGGGCTAGCTTAGGGCGGGCGTACAACAGGCTGTATCCACCCGC
GCTCAAACTCAAAGTCAAGAAAAGGGAAAGCCCACCGACAAAATATTTGC
CTCGCAGATACTTCTCGAACATTTATTCCCATTCCCGGATGGGTGTGGAT
AAGTGTTTTCCTTTGCTCCCTTTTTCGTTTTCAGCGACTTTGCCGCCAGG
AAGAACGCGAGGGTAGCCGGCTGTGGGCGGTCCAATTATTCTCGCAGCAA
GGTGAGGCAGCATCTGCGGTCGTCGTCGTCGTCGTCGCGGTCGTCATCGT
TACTGTTGCTGTTGCTGTTTCTGTTGTTGTTGTTGTTGTTGTTTTTGTTG
TTGTGGTCGTTGCTGTTGGTGTTGTTGCTGCCATCGTCATCGTCGCCGTT
GTTGCTGGTGTTCGCATCATGTACTTTCTCGCTTTCTCTTCTCACCATCT
TCGCGCCACTGCAAGCATATGAGGACGGCAGTGCAGAGGTACTTCTCCCA
ACAACAGAATCATTGGACGGCACCCCAGATCGAGAACCGCAACAAACGCA
CTATATGGCGCCCTACACACAGTCGACCATACCCTATGTAACCCTCACCC
TCTCACCCCACCCTTCAGACAATTCCCATGTTCCGACCAACCCACTATTC
CCGTGAAATGCCGTCCTCAACCGCCATTCATACCGCGAGAAAAGATGTTG
ACGCACAAGACCAAGAACGCGGCCTTCACGAAGGAGCTTCTGAAACAATC
TCCGGGTGTCGGCGGAGTAGCAGCGAAGTGCCCGCGAGGTCTAAAGTCTC
ACTTCCTGGGGTTGCAGAACTTCGAGTACGATTGGGGGGGCGGGGGTCGA
CGAGGGGGCGGGATGACTGGAACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:624094..627220+

>mRNA_Ecto-sp6_S_contig98.18807.1 ID=mRNA_Ecto-sp6_S_contig98.18807.1|Name=mRNA_Ecto-sp6_S_contig98.18807.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1428bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:624094..627220+ (Ectocarpus species6 EcLAC_371)
CCCCCGTTCGAAGTATCGGGCGATAATTCGACGACGACGGAAGGACCAGG
GGAGGGCTTGTTGGGTCTCGATCTGGCGTTCAACTGTATCGGCCGCGCGG
GGATGGCCGCTCTTCACCGCGCTCTCGCTTCCGACGCCACGAGCGTCTTG
TTCTTGGAGCTTCGGGGTAACGAAACCAAAGGAAGCACCGAACGCCGTGA
CACCACCAGCCCAGAACCCTGCTCCAACCGCAGCGACGACAACGGCGGCG
GCGGTAGTGGCGTCAACAACAACAGCAACGGCATCCACACCAACAGCAGG
GGTATGACAGAGAGCAACACACACGACGACGACGACGACATCAGCAACAG
CAACCCCGTGGAAACCCCGCCTCTCGAGGTGCTACTGGAAGATATCGGCA
ACGTCTGCGCCGAGCGGAGGCGAGACCGACGGCTGCAAAACGAGCTTCTC
CGACCGCACCACCGCCGCTGCTCCGCGGCAGCAGACCGACAAGAACCGCG
CGCATCACCGTCTTCGCCACCAAGGCACACATCAGTAGGACAACCATCCA
CACCTCAGAGCACCGTTCTCTATCCCGGCCGGGACCGACGGCCAGCCACC
GCAACGGCCACAGCAGCGTTTGGAGTCAGTGGTGACACACGCGACATCGG
CAGTGCTCCGCGCCTCCCCGGCCATGGCAACAGCGTTATCAAGCCGAGGC
CGCTAGAGGGGGCGCTGCCCATGCGCGGCTACTACGTCGGCCCGCTTCTG
GACAGCTCCTTCGACCTCCTCATGCTCAGGGAGCCGGTGGCAGACCCTAC
CGACCAGTCCCTCTACGTCAACCGGACCAGGGACAAGATCGAGCAGAGAA
AAGCGCTCCGAGAACAGCAGCATCGGGGCGGCTGTGCTGGTGGTGTTGGG
AGCGGTGGCGTTGGAGGTGCCGTTGGAGGAGGAGACCGCGGCGGTGGCGG
GAGCAATAGCAGAGGCAGTGGACATGGCCAGCGGGGTGCTGTGGAGAATG
TGGCCGCCGCTGCTGGAAACAGTGCCGGGGAGCAGACCTCAGCGGCGCCC
TCAGCGGCGCCGGAGAAATGGACGCCCGTTGAACCGTTGAGGGCAGGAGA
CCTAGTGTCCCCTATAACCACCAACCTGGAACGGGAGCACGTGATGGCGG
AGAGGCGCCGCCTCTATCAAATAGACAGCGACTTTGCCGCCAGGAAGAAC
GCGAGGGTAGCCGGCTGTGGGCGGTCCAATTATTCTCGCAGCAAGATGTT
GACGCACAAGACCAAGAACGCGGCCTTCACGAAGGAGCTTCTGAAACAAT
CTCCGGGTGTCGGCGGAGTAGCAGCGAAGTGCCCGCGAGGTCTAAAGTCT
CACTTCCTGGGGTTGCAGAACTTCGAGTACGATTGGGGGGGCGGGGGTCG
ACGAGGGGGCGGGATGACTGGAACGTGA
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