mRNA_Ecto-sp6_S_contig98.18800.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18800.1
Unique NamemRNA_Ecto-sp6_S_contig98.18800.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:562081..565522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1305
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_002515.1
Cds size1305
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18800.1prot_Ecto-sp6_S_contig98.18800.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 562081..565522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350607.0241797-CDS-Ecto-sp6_S_contig98:562080..5622171682350607.0241797-CDS-Ecto-sp6_S_contig98:562080..562217Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 562081..562217 -
1682350607.036552-CDS-Ecto-sp6_S_contig98:562820..5631321682350607.036552-CDS-Ecto-sp6_S_contig98:562820..563132Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 562821..563132 -
1682350607.04737-CDS-Ecto-sp6_S_contig98:563496..5636191682350607.04737-CDS-Ecto-sp6_S_contig98:563496..563619Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 563497..563619 -
1682350607.0574787-CDS-Ecto-sp6_S_contig98:563985..5642041682350607.0574787-CDS-Ecto-sp6_S_contig98:563985..564204Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 563986..564204 -
1682350607.0674806-CDS-Ecto-sp6_S_contig98:564461..5647481682350607.0674806-CDS-Ecto-sp6_S_contig98:564461..564748Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 564462..564748 -
1682350607.0773358-CDS-Ecto-sp6_S_contig98:565295..5655221682350607.0773358-CDS-Ecto-sp6_S_contig98:565295..565522Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 565296..565522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18800.1

>prot_Ecto-sp6_S_contig98.18800.1 ID=prot_Ecto-sp6_S_contig98.18800.1|Name=mRNA_Ecto-sp6_S_contig98.18800.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=435bp
MHLCDQNEPQEHHDEREDQQHQNQGHSGHHHGRRRHLDIPVRRRGREPPR
PTAPSEDGSAGGWQLHHSSTGLPFYYNRTTGESVWARGPTGTLVETAGGD
DRNSKSAGTGLRRFSYEGHSDRSSASSGGSSGTSSTSSSCTGGGGGPREG
GTSTSSSSETDSTSSASISMSGGSIRSDDDERKSSSSSSTESSDTSSSSG
DSWTASMEMRFRRMMVSEEGRKMLAGEVQALTARQARRARRPPRGTETTR
RSARRRRKSSTSSSLTYPGEGDDVEMALLTKPHSAERRNSSRIRSRSNSS
SSSRGRGRGSSRGRGRGSSSSSSGSSSGSSSSSSDSTESSFSLNMSSGSD
GGSDLSLLTSDIVLERLEKVEKILTYSREAAFSIARSSYGFATHASVVVW
TAARRGVMRVRRFILSEDRFSPQSPPSPFTPAAI*
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mRNA from alignment at Ecto-sp6_S_contig98:562081..565522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18800.1 ID=mRNA_Ecto-sp6_S_contig98.18800.1|Name=mRNA_Ecto-sp6_S_contig98.18800.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3442bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:562081..565522- (Ectocarpus species6 EcLAC_371)
ATGCACCTGTGTGACCAAAACGAGCCCCAAGAGCATCACGACGAACGGGA
GGACCAGCAGCATCAGAACCAGGGGCATAGTGGTCACCACCATGGCCGAA
GACGACATCTCGACATACCTGTTCGGCGTCGGGGAAGGGAGCCGCCAAGG
CCGACAGCACCTTCCGAGGACGGCAGTGCTGGGGGCTGGCAGCTCCATCA
TTCGTCAACGGGACTGCCCTTCTACTAGTACGTCCGTCTGACCCATACAT
TCAGTGATTGTCACTTCATACTTCTTCATTCTACGAGAATTGGCCTGATG
ACTTGTGCACAGCGGTATATACGTACATGTAGTCTTCAGCAATTAGAAAA
CAAACGACCACCTTTGCTATGGGCACGTCGAAGGGCACGGAAGAAAGGAC
TTACCAAGAAATATGTTGAATGGACACGTATCAGAACAGTTTTGTTATAA
GGCCACGAAAACACTGTGCAAGTCGTTACTTCATTGGGCCGACATGAACT
CATGCATTTGCGTACGCCGGCCACATTGCCTGGTATGGCCGGCGTTCAGG
TGGTCGCCCCACAGTATGTCAGCCTTCACAAAAGCACCCCCGACAAGGCG
AAGTGCAGATCAGCACCAGCATCAACAATCACGACCCGTGCGCAGACAGA
GTGCTATCCCGGCTGGACCCGCCATAGTTCGGGTTCGTTTAACTCTCGAT
CCAGATCGGTAGACAAGAGCACCAGCAAATAACTGTGATTTCATTACAGT
ATGTATCTATATTCTTTCGACCAGCAATCGCACGACGGGAGAGTCTGTCT
GGGCACGTGGACCGACGGGAACTTTGGTCGAAACGGCCGGCGGCGATGAC
CGCAACAGCAAGAGCGCGGGCACCGGCCTGCGGCGTTTCTCATATGAGGG
TCACAGCGACAGGAGCAGCGCAAGCTCCGGCGGCAGCTCCGGCACGTCCT
CGACATCGTCTTCGTGTACTGGAGGGGGAGGAGGGCCACGTGAAGGTGGA
ACGTCGACGAGCTCTTCGTCGGAAACTGATTCGACTTCCTCGGCGTCGAT
CTCAATGTCGGGTGAGCCTGCTGTAGTGAAAATTGCGTAGACCAGGTGGA
CCAAGCCAGCATAATGGAGACCCTAGCATGCCGTTTCCCTGACCTATCTA
TTGTATCAGGGTCTTTCTCACTATTTTTGCACGAATTGGGCAGCCTCATG
GAAGGTTATCGGTGTCCATTGACCTTCTCTCTCGTCGACACTATGCTGTC
GGGCACCCAGCCCCAACTCCGGGCCTTGTCCTTATCAACAATCCCGCTTA
ACTAACCTGAATATCAAGGAGGCTCCATCCGAAGCGACGATGATGAGAGA
AAATCTTCCTCTTCCTCCTCAACGGAGTCGTCAGACACATCTTCGTCGAG
CGGAGATAGCTGGACGGCGTCGATGGAGATGAGATTCCGGCGAATGATGG
TTTCCGAGGAAGGCCGGAAGATGCTGGCGGGCGAGGTTCAAGCCCTCACC
GCGCGGCAAGCTAGGCGTGCCCGACGGCCTCCACGAGGTAGGGGTGGGCG
AACTACCTGCATCGTTTAGCACATGTCCCACAGTTGCCCAGCCGGTGGCC
CGACCATTTTTCTGCGGGTGCCTTTCCGTTGTAGTGATACCATAGCAGGG
TTCCATGAGAGTAGGAGGCTCGACACTTGCAAGTAACGGTATTCGACGGG
AACACTGCAATATCCCACAGCAGCGCAAGGAGAGGGTGTCAATAGTAATG
CGACTGGAATGAGGAATAGGAGTCCAAAGGCCTCGATTGTCCGGCCCACA
TGTGGCAAATATGTGCAAATTTTTTCACTTGTCCTTCCTCATGCGCTATC
AGCTGCTGCAAAGTTCTGAACATGGTGATCTCTCCCCCGCTTTTTTATGC
AAGGGACCGAGACAACAAGAAGATCTGCGAGGAGGAGAAGGAAGAGTAGC
ACGTCGTCGTCGCTTACGTACCCTGGCGAGGGAGACGACGTTGAAATGGC
CCTACTCACCAAACCGCACAGTGCTGGTGAGTGAAAGGCTACCTGTGGGT
GTTCTTGAACGGACAACAAGAGGTAGGGATAGCAGCACCTCTCGTTGAAC
TGAAAGGTGGTTTACCGGACATTGTTTGTGCCGAGGTTTCGCCCCCCTTC
TCGTCGTGTTTTCTGCGAACGTTTCTTATCGCGTGAGGTGAAAATGGTGG
TACTGTTCAAGCCGATCAGAGGTGTTGTTCAAGTTGCGTCGGTCATGACG
GATTGCTGCCCTATAACAGTGCAGACACGGCAATATCAACACTGATTGTC
TGAGGAGACACCATTATTTTTCACCGACCATGTTTCTCATATGGTATTCT
TTTCCGGCTCTATGTATGCCCCGTCCTGGCCACCATCTAGAGAGAAGAAA
TAGTAGCCGCATCAGGAGCAGAAGCAACAGCAGCAGCAGCAGCAGGGGCC
GCGGCAGGGGCAGCAGCAGGGGCCGCGGCAGGGGCAGCAGCAGCAGCAGC
AGCGGCAGCAGCAGCGGCAGCAGCAGCAGTAGTAGCGATAGCACCGAATC
GTCCTTCTCGCTGAACATGAGCAGTGGCAGCGACGGAGGGAGCGACCTGT
CTCTATTGACAAGTGATATTGTCCTCGAGAGGCTCGAGAAGGTGGAGAAG
ATTTTGACCTATTCGCGGGAGGCTGCATTTTCCATTGCCCGTTCCTCGTA
CGGTAAGCACGAAGATATCAAGCACGTGTAGAAACAAGAACAGGAGGCCA
CTTGTTTCGCTAAATTATTTTTCGATAAATTGTTTCGCTGGTGATCCATG
CGCACGATGGATGCCGATGGCATCCAACGGGTCGAAGGTTGTTGCTAGCA
GTCAACAATACCCTACATGCCAACAGGGTCCAAACATCTGAGAAATGCAT
GCACGCCACTGGAATCACACAAACCAACAAGGGTAGAGGCATATTCGGCA
CTACACGAAAACACGTGCGGCTTCTGTAGGGTGTCGATTTAAGCGTTGGC
TCTTGTGACTAGCTCGAACATATTTACCCATCCAATACTGACAAGAGCCC
TTTCCTACGTACCTTCCCTCCCACCTTGGAACACTCCCGCCTAAATGACC
GAGATGGTCCCGTCCATACGGCCAGCACGCCTTCCCACCGCACATCGCTC
ACCCACCTACCCCGCCCTTAACGCCCTCGCCTCTGTTCCTTTTCCTGCAC
CGTCTCGAAAACGTGTTGCGTAGTCTGTGGTAAAAATACTAGGGAAGCAA
GAATTTTTGTAATGCATATTCTTTTGGTTCCCTGTCCGTCCCCTCGCCGT
GTCAGGGTTTGCGACGCACGCGTCCGTCGTGGTGTGGACCGCGGCAAGGC
GAGGGGTGATGCGCGTACGGAGATTTATCCTCTCCGAAGATCGTTTCAGC
CCACAATCTCCCCCATCTCCATTTACCCCCGCCGCGATCTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:562081..565522-

>mRNA_Ecto-sp6_S_contig98.18800.1 ID=mRNA_Ecto-sp6_S_contig98.18800.1|Name=mRNA_Ecto-sp6_S_contig98.18800.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1305bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:562081..565522- (Ectocarpus species6 EcLAC_371)
ATGCACCTGTGTGACCAAAACGAGCCCCAAGAGCATCACGACGAACGGGA
GGACCAGCAGCATCAGAACCAGGGGCATAGTGGTCACCACCATGGCCGAA
GACGACATCTCGACATACCTGTTCGGCGTCGGGGAAGGGAGCCGCCAAGG
CCGACAGCACCTTCCGAGGACGGCAGTGCTGGGGGCTGGCAGCTCCATCA
TTCGTCAACGGGACTGCCCTTCTACTACAATCGCACGACGGGAGAGTCTG
TCTGGGCACGTGGACCGACGGGAACTTTGGTCGAAACGGCCGGCGGCGAT
GACCGCAACAGCAAGAGCGCGGGCACCGGCCTGCGGCGTTTCTCATATGA
GGGTCACAGCGACAGGAGCAGCGCAAGCTCCGGCGGCAGCTCCGGCACGT
CCTCGACATCGTCTTCGTGTACTGGAGGGGGAGGAGGGCCACGTGAAGGT
GGAACGTCGACGAGCTCTTCGTCGGAAACTGATTCGACTTCCTCGGCGTC
GATCTCAATGTCGGGAGGCTCCATCCGAAGCGACGATGATGAGAGAAAAT
CTTCCTCTTCCTCCTCAACGGAGTCGTCAGACACATCTTCGTCGAGCGGA
GATAGCTGGACGGCGTCGATGGAGATGAGATTCCGGCGAATGATGGTTTC
CGAGGAAGGCCGGAAGATGCTGGCGGGCGAGGTTCAAGCCCTCACCGCGC
GGCAAGCTAGGCGTGCCCGACGGCCTCCACGAGGGACCGAGACAACAAGA
AGATCTGCGAGGAGGAGAAGGAAGAGTAGCACGTCGTCGTCGCTTACGTA
CCCTGGCGAGGGAGACGACGTTGAAATGGCCCTACTCACCAAACCGCACA
GTGCTGAGAGAAGAAATAGTAGCCGCATCAGGAGCAGAAGCAACAGCAGC
AGCAGCAGCAGGGGCCGCGGCAGGGGCAGCAGCAGGGGCCGCGGCAGGGG
CAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCGGCAGCAGCAGCAGTAGTA
GCGATAGCACCGAATCGTCCTTCTCGCTGAACATGAGCAGTGGCAGCGAC
GGAGGGAGCGACCTGTCTCTATTGACAAGTGATATTGTCCTCGAGAGGCT
CGAGAAGGTGGAGAAGATTTTGACCTATTCGCGGGAGGCTGCATTTTCCA
TTGCCCGTTCCTCGTACGGGTTTGCGACGCACGCGTCCGTCGTGGTGTGG
ACCGCGGCAAGGCGAGGGGTGATGCGCGTACGGAGATTTATCCTCTCCGA
AGATCGTTTCAGCCCACAATCTCCCCCATCTCCATTTACCCCCGCCGCGA
TCTAG
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