mRNA_Ecto-sp6_S_contig98.18798.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18798.1
Unique NamemRNA_Ecto-sp6_S_contig98.18798.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18798.1 vs. uniprot
Match: D8LEM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM1_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 7.040e-69
Identity = 100/110 (90.91%), Postives = 101/110 (91.82%), Query Frame = 1 
Query:    1 MEVGRGGDHSMPRVEGERYPSFMLTAGSNGNSIPKSPVARKPRPKGPWRSVAKTCSMFEPMHTTSARFHTLPFPCVRYQRGKSSAVKNRSTGWLDGASCPDDQGRLQPDR 330
            MEVGRGGDHSMPRVEG   PSFMLTAG NGN IPKSPVAR+PRPKGPWRSVAKTCSMF PMHTTSARFHTLPFPCV YQRGKSSAVKNR TGWLDGA CPDDQGRLQPDR
Sbjct:    1 MEVGRGGDHSMPRVEG--CPSFMLTAGLNGNGIPKSPVARRPRPKGPWRSVAKTCSMFGPMHTTSARFHTLPFPCVIYQRGKSSAVKNRGTGWLDGALCPDDQGRLQPDR 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEM1_ECTSI7.040e-6990.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:548972..549802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size330
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_002500.1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350606.8241904-CDS-Ecto-sp6_S_contig98:548971..5492481682350606.8241904-CDS-Ecto-sp6_S_contig98:548971..549248Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 548972..549248 -
1682350606.834598-CDS-Ecto-sp6_S_contig98:549749..5498021682350606.834598-CDS-Ecto-sp6_S_contig98:549749..549802Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 549750..549802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18798.1prot_Ecto-sp6_S_contig98.18798.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 548972..549802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18798.1

>prot_Ecto-sp6_S_contig98.18798.1 ID=prot_Ecto-sp6_S_contig98.18798.1|Name=mRNA_Ecto-sp6_S_contig98.18798.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=110bp
MEVGRGGDHSMPRVEGERYPSFMLTAGSNGNSIPKSPVARKPRPKGPWRS
VAKTCSMFEPMHTTSARFHTLPFPCVRYQRGKSSAVKNRSTGWLDGASCP
DDQGRLQPDR
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mRNA from alignment at Ecto-sp6_S_contig98:548972..549802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18798.1 ID=mRNA_Ecto-sp6_S_contig98.18798.1|Name=mRNA_Ecto-sp6_S_contig98.18798.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=831bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:548972..549802- (Ectocarpus species6 EcLAC_371)
ATGGAGGTCGGGCGAGGAGGGGACCACTCGATGCCCCGAGTCGAAGGTGA
GAGGTCAGTATCAGACGATGTCGTCCTTGTTGCTTGACATTGCTGCTGCT
GTGAAGGGTCGAAGCTTGCAACTGGTATCGATATTGTACTGTACTCCTAT
TTTTCGTTTGTCGCTGCTCACAGCAGTTACTGTTTGGACGACTTTATCTT
GATGCTATCCCCTGCAGTACATCGGTGGGTATGCACGCGGGGTCGACACA
GTGAAACACTCCAATTTGAATCGCGTCCATTCGTAAATGGATTCTCATTC
TTATTCCTTCGCATCTCGTGTGAAACCTCGTTCGCTGCTGGTTCATGGTT
CCGTGGATAGTGAGAGCTAGCGAAACGATAAAGTGTCCTGGTGGCGGCTG
TTCAAGATGTGGTTGGTGTTGGGCGCCAAAGAACATTCCGGTCGAAAGAG
CGAAAATCGTGCTATTCACTTCTACTGTGAAGTTGAAACGAAACGAACGA
GCTTTCTGCTGTCTGTGCCCTGCTCTGTATGTATTTGTGTGTGTTCACGA
CAAGGTATCCAAGTTTTATGCTCACCGCCGGATCGAACGGCAACAGCATC
CCGAAGTCACCAGTGGCAAGGAAGCCGCGCCCCAAAGGCCCCTGGCGGAG
CGTGGCAAAGACATGTTCGATGTTCGAGCCCATGCACACCACGTCCGCCC
GCTTTCACACTTTGCCCTTCCCTTGCGTGAGATACCAGCGCGGCAAGAGC
TCAGCAGTCAAGAATCGCAGCACCGGGTGGCTTGACGGCGCTTCGTGTCC
AGACGATCAGGGCCGACTGCAGCCAGACAGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:548972..549802-

>mRNA_Ecto-sp6_S_contig98.18798.1 ID=mRNA_Ecto-sp6_S_contig98.18798.1|Name=mRNA_Ecto-sp6_S_contig98.18798.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:548972..549802- (Ectocarpus species6 EcLAC_371)
ATGGAGGTCGGGCGAGGAGGGGACCACTCGATGCCCCGAGTCGAAGGTGA
GAGGTATCCAAGTTTTATGCTCACCGCCGGATCGAACGGCAACAGCATCC
CGAAGTCACCAGTGGCAAGGAAGCCGCGCCCCAAAGGCCCCTGGCGGAGC
GTGGCAAAGACATGTTCGATGTTCGAGCCCATGCACACCACGTCCGCCCG
CTTTCACACTTTGCCCTTCCCTTGCGTGAGATACCAGCGCGGCAAGAGCT
CAGCAGTCAAGAATCGCAGCACCGGGTGGCTTGACGGCGCTTCGTGTCCA
GACGATCAGGGCCGACTGCAGCCAGACAGG
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