mRNA_Ecto-sp6_S_contig98.18791.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18791.1
Unique NamemRNA_Ecto-sp6_S_contig98.18791.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18791.1 vs. uniprot
Match: D8LEM6_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM6_ECTSI)

HSP 1 Score: 473 bits (1217), Expect = 4.030e-165
Identity = 296/323 (91.64%), Postives = 304/323 (94.12%), Query Frame = 1 
Query:    1 MPVDQDASGVGLLLAARSGDIEIVRSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNGWTALHTSIANGREDVAFALLSGHHQPASINMEATTSNGDTPLHMAAFHGREWAVEILLRLGANRGAINDRGERPVQVARHNTVRAMLGPSTGSPNHNEELAAGFASSFEEGEGDVPRNIPTNASFGHGTIGGGNRRENXXXXXXXXXXXXXXXFYETPSSKAKNWRVHGVPSQLEKSTLPPVEQESEKIGDNKHFDRLLNGSLVSSRVSTETEEGSASLQKRGSDSSFEEASSEGELSLDSRMAQHDLA 969
            MPVDQDASGVGLLLAARSGDIEI+RSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNGWTALHTSIANGREDVAFALLSGHHQPA INMEATTSNGDTPLHMAAFHGREWAVEILLRLGA+RGAIN+RGERPVQVARHNTVRAMLGPSTGSPNH+EELAAGFASSFEEGEGDVPRNIPTNASFGHGTI GGNRRE XXXXXXXXXXXXXXXFYETPSSKAK+ +VHGVPSQLE STLP VEQES KIGDNKHFDRL NGSLVSS VSTETEEG ASLQKRGSDSSFEEASSE  L +  R +Q   A
Sbjct:    1 MPVDQDASGVGLLLAARSGDIEILRSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNGWTALHTSIANGREDVAFALLSGHHQPALINMEATTSNGDTPLHMAAFHGREWAVEILLRLGASRGAINNRGERPVQVARHNTVRAMLGPSTGSPNHDEELAAGFASSFEEGEGDVPRNIPTNASFGHGTISGGNRREXXXXXXXXXXXXXXXXFYETPSSKAKSRQVHGVPSQLENSTLPLVEQESGKIGDNKHFDRLPNGSLVSSHVSTETEEGFASLQKRGSDSSFEEASSEVSLHVRVRFSQKHFA 323
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BLAST of mRNA_Ecto-sp6_S_contig98.18791.1 vs. uniprot
Match: A0A6H5KS46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS46_9PHAE)

HSP 1 Score: 400 bits (1029), Expect = 5.670e-137
Identity = 253/328 (77.13%), Postives = 260/328 (79.27%), Query Frame = 1 
Query:    1 MPVDQDASGVGLLLAARSGDIEIVRSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNGWTAL-HTSIANGREDVAFALLSGHHQPASINMEATTSNGDTPLHMAAFHGREWAVEILLRLGANRGAINDRGERPVQVARHNTVRAMLGPSTGSPNHNEELAAGFASSFEEGEGDVPRNIPTNASFGHGTIGGGNRRENXXXXXXXXXXXXXXXFYETPSSKAKNWRVHGVPSQLEKSTLPPVEQESEKIGDNKHFDRLLNGSLVSSRVSTETEEGSASLQKRGSDSSFEEASSEGELSLDSRMAQHDLAEEIL 981
            MPV QDASGVGLLLAARSGD+E VRSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXX     NNGWTA  H      R     A L         +  ATTSNGDTPLHMAAFHGREWAVE LLRLGANRGAINDRGERPV+VARHNTVRAMLGPSTGSPN +EE A GFASSFEEGEGDVPRNIPTN  FGH TIGGGN REN               FYETPSSKAKN RVH V SQ+EKSTLP VEQES KIGDN+ FDR LNGSLVSS VSTETE   ASLQKRGSDSSFEEASSEGELSLDSRMAQH  AEEI+
Sbjct:    1 MPVHQDASGVGLLLAARSGDVEFVRSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXXVNAYDNNGWTAFAHVDREWPRGGGLRAPLQLSSASIDQHGGATTSNGDTPLHMAAFHGREWAVEKLLRLGANRGAINDRGERPVEVARHNTVRAMLGPSTGSPNQDEEPAVGFASSFEEGEGDVPRNIPTNTKFGHRTIGGGNGRENADPGAGVVEGVRRS-FYETPSSKAKNRRVHRVLSQMEKSTLPSVEQESGKIGDNEQFDRSLNGSLVSSHVSTETEVRFASLQKRGSDSSFEEASSEGELSLDSRMAQHYPAEEII 327
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BLAST of mRNA_Ecto-sp6_S_contig98.18791.1 vs. uniprot
Match: A0A8E2JD66_9PEZI (Ankyrin repeat protein (Fragment) n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2JD66_9PEZI)

HSP 1 Score: 56.2 bits (134), Expect = 2.490e-6
Identity = 33/89 (37.08%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:  217 NGWTALHTSIANGREDVAFALLSGHHQPASINMEATTSNGDTPLHMAAFHGREWAVEILLRLGANRGAINDRGERPVQVARHNTVRAML 483
            NG+TA+H + +NG++DV   LL      A +++ A TSNG++PL  A   G    V +L+  GAN   +N+  E  V +A     RA+L
Sbjct:   19 NGFTAIHVAASNGKDDVLRVLLD-----AGMDINARTSNGNSPLDSAINGGHLSTVMLLVESGANINHLNEFEETAVHLAAFAENRAIL 102
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BLAST of mRNA_Ecto-sp6_S_contig98.18791.1 vs. uniprot
Match: A0A3N4IK05_ASCIM (Ankyrin repeat protein (Fragment) n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4IK05_ASCIM)

HSP 1 Score: 53.1 bits (126), Expect = 1.880e-5
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  220 GWTALHTSIANGREDVAFALLSGHHQPASINMEATTSNGDTPLHMAAFHGREWAVEILLRLGANRG 417
            GWTALH  IA  RE +AFAL   +   A  ++EA    G TPLH AA+ GRE  V+ LL  GA++G
Sbjct:    1 GWTALH--IAAERERLAFALALIN---AGADIEAQDDLGQTPLHRAAWVGREKMVKFLLDAGADKG 61
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BLAST of mRNA_Ecto-sp6_S_contig98.18791.1 vs. uniprot
Match: W0SIY3_9PROT (Ankyrin repeat-containing protein n=2 Tax=Sulfuritalea hydrogenivorans TaxID=748811 RepID=W0SIY3_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 6.210e-5
Identity = 38/144 (26.39%), Postives = 65/144 (45.14%), Query Frame = 1 
Query:   25 GVGLLLAARSGDIEIVRSLVRQGAELEQRDILGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNGWTALHTSIANGREDVAFALLSGHHQPASINMEATTSNGDTPLHMAAFHGREWAVEILLRLGANRGAINDRGERPVQVA 456
            G GL++ A  G+I ++   + +GA++ + +  G+                                W ALH +   G   +   LL    + A +N  A ++NG TPL MAA  G+E   ++LL+ GA R  +N+RG+  ++ A
Sbjct:   53 GTGLMIGAWEGNIPMMELFLSRGADINKVNAFGEQALLHAAWKGRLEAVRWLVDHGARLNREGRE-WAALHYATFAGHGGIVDYLLE---RGADVN--ALSTNGSTPLMMAAREGQEGIAKVLLKAGARRDIVNERGDDAMRWA 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LEM6_ECTSI4.030e-16591.64Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KS46_9PHAE5.670e-13777.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8E2JD66_9PEZI2.490e-637.08Ankyrin repeat protein (Fragment) n=1 Tax=Lepidopt... [more]
A0A3N4IK05_ASCIM1.880e-550.00Ankyrin repeat protein (Fragment) n=1 Tax=Ascobolu... [more]
W0SIY3_9PROT6.210e-526.39Ankyrin repeat-containing protein n=2 Tax=Sulfurit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:507823..509328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score473.8
Seed ortholog evalue6.7e-131
Seed eggNOG ortholog2880.D8LEM6
Model size1005
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-23_002440.1
Cds size1005
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350606.3752558-CDS-Ecto-sp6_S_contig98:507822..5085091682350606.3752558-CDS-Ecto-sp6_S_contig98:507822..508509Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 507823..508509 -
1682350606.3890042-CDS-Ecto-sp6_S_contig98:508686..5088391682350606.3890042-CDS-Ecto-sp6_S_contig98:508686..508839Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 508687..508839 -
1682350606.397178-CDS-Ecto-sp6_S_contig98:509163..5093281682350606.397178-CDS-Ecto-sp6_S_contig98:509163..509328Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 509164..509328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18791.1prot_Ecto-sp6_S_contig98.18791.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 507823..509328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18791.1

>prot_Ecto-sp6_S_contig98.18791.1 ID=prot_Ecto-sp6_S_contig98.18791.1|Name=mRNA_Ecto-sp6_S_contig98.18791.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=335bp
MPVDQDASGVGLLLAARSGDIEIVRSLVRQGAELEQRDILGDSGLLKAAR
YGHAQVVELLLMAGADVNAYDNNGWTALHTSIANGREDVAFALLSGHHQP
ASINMEATTSNGDTPLHMAAFHGREWAVEILLRLGANRGAINDRGERPVQ
VARHNTVRAMLGPSTGSPNHNEELAAGFASSFEEGEGDVPRNIPTNASFG
HGTIGGGNRRENAETGAGVVGGVGRRSFYETPSSKAKNWRVHGVPSQLEK
STLPPVEQESEKIGDNKHFDRLLNGSLVSSRVSTETEEGSASLQKRGSDS
SFEEASSEGELSLDSRMAQHDLAEEILDCSTGDH*
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mRNA from alignment at Ecto-sp6_S_contig98:507823..509328-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18791.1 ID=mRNA_Ecto-sp6_S_contig98.18791.1|Name=mRNA_Ecto-sp6_S_contig98.18791.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1506bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:507823..509328- (Ectocarpus species6 EcLAC_371)
ATGCCTGTCGACCAGGATGCATCTGGAGTCGGTCTCCTTTTAGCTGCTAG
GAGTGGCGATATCGAAATTGTACGCTCTCTGGTACGGCAAGGTGCAGAGT
TGGAGCAGCGAGACATACTAGGGGACAGCGGGCTCCTGAAGGCTGCTCGG
TACGGCCATGCTCAGGTGCTCAGGTACACATGTTACGGATACACCGTTCA
TCTCTGTGGTTGGTTGTTGTTCGATCAAGGGGGCTAATCCCCTCGGACAC
TCAGTCAACGCTGAGTATGTAGGCCTGTGGTACACTGCCTCCTCAAAAAC
AAGGACGGGGTGAGGCGACAACCAGTACGCTGCCAACAATATTGTATGCA
CGTGCAGCTACACAACAACCAGATGGCTGTACTTACAACATGCTTGGTGT
ACGCAACGAAATCCGCAACAATCTCCACTATTATTTCAAGACCATTAAAC
CCCTCGTTCAACATCGAGCCTCCCCTCGTATGTGTGAAGGTGGTGGAATT
GCTGCTCATGGCCGGCGCCGACGTCAATGCCTACGACAACAACGGATGGA
CCGCTTTGCACACGTCGATCGCGAACGGCCGCGAGGACGTGGCCTTCGCG
CTCCTTTCCGGCCATCACCAGCCAGCATCGATCAATATGGAGGTGTGTAC
ATAGTTGGACACCTCTACATTCGCTATACAACGCGGTTCACTCACACGGT
CGTTGGGCACACAAAACATGGTCACACCACCGCCCTGCCCTACGGAACCA
AAATGCATATGGCAGGTGCACTTTATTATTTTCCCTCGATGATGTTTCTC
CTGTACCCCGGGACGGCAGGCGACTACCTCGAACGGGGACACGCCTCTCC
ATATGGCGGCCTTTCACGGGAGAGAGTGGGCCGTAGAAATACTCCTGCGT
CTTGGGGCAAATCGTGGGGCCATCAACGATAGAGGAGAGCGCCCGGTTCA
GGTAGCAAGGCACAACACCGTGCGTGCGATGCTCGGACCTTCGACGGGAT
CACCCAACCACAACGAAGAACTTGCGGCCGGATTCGCTTCCAGCTTTGAA
GAGGGTGAGGGCGACGTGCCGCGAAACATTCCTACCAACGCCAGCTTCGG
CCATGGCACCATCGGTGGTGGAAATAGGCGGGAGAATGCAGAGACCGGCG
CAGGGGTCGTCGGGGGGGTTGGACGACGTTCTTTCTACGAGACACCATCG
TCTAAAGCAAAGAACTGGCGAGTACACGGAGTGCCGAGCCAATTGGAAAA
ATCCACGTTGCCCCCGGTGGAGCAGGAGTCCGAAAAAATCGGAGACAACA
AACATTTCGACCGGTTGCTCAACGGCAGCCTTGTCAGCAGCCGCGTTTCG
ACGGAGACAGAAGAGGGGTCTGCTTCCTTGCAGAAACGAGGAAGCGATTC
CTCGTTCGAAGAAGCCTCATCGGAAGGTGAACTGTCCCTCGACAGCAGAA
TGGCACAGCACGATCTGGCAGAGGAAATCCTAGACTGCAGTACCGGTGAT
CACTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:507823..509328-

>mRNA_Ecto-sp6_S_contig98.18791.1 ID=mRNA_Ecto-sp6_S_contig98.18791.1|Name=mRNA_Ecto-sp6_S_contig98.18791.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1005bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:507823..509328- (Ectocarpus species6 EcLAC_371)
ATGCCTGTCGACCAGGATGCATCTGGAGTCGGTCTCCTTTTAGCTGCTAG
GAGTGGCGATATCGAAATTGTACGCTCTCTGGTACGGCAAGGTGCAGAGT
TGGAGCAGCGAGACATACTAGGGGACAGCGGGCTCCTGAAGGCTGCTCGG
TACGGCCATGCTCAGGTGGTGGAATTGCTGCTCATGGCCGGCGCCGACGT
CAATGCCTACGACAACAACGGATGGACCGCTTTGCACACGTCGATCGCGA
ACGGCCGCGAGGACGTGGCCTTCGCGCTCCTTTCCGGCCATCACCAGCCA
GCATCGATCAATATGGAGGCGACTACCTCGAACGGGGACACGCCTCTCCA
TATGGCGGCCTTTCACGGGAGAGAGTGGGCCGTAGAAATACTCCTGCGTC
TTGGGGCAAATCGTGGGGCCATCAACGATAGAGGAGAGCGCCCGGTTCAG
GTAGCAAGGCACAACACCGTGCGTGCGATGCTCGGACCTTCGACGGGATC
ACCCAACCACAACGAAGAACTTGCGGCCGGATTCGCTTCCAGCTTTGAAG
AGGGTGAGGGCGACGTGCCGCGAAACATTCCTACCAACGCCAGCTTCGGC
CATGGCACCATCGGTGGTGGAAATAGGCGGGAGAATGCAGAGACCGGCGC
AGGGGTCGTCGGGGGGGTTGGACGACGTTCTTTCTACGAGACACCATCGT
CTAAAGCAAAGAACTGGCGAGTACACGGAGTGCCGAGCCAATTGGAAAAA
TCCACGTTGCCCCCGGTGGAGCAGGAGTCCGAAAAAATCGGAGACAACAA
ACATTTCGACCGGTTGCTCAACGGCAGCCTTGTCAGCAGCCGCGTTTCGA
CGGAGACAGAAGAGGGGTCTGCTTCCTTGCAGAAACGAGGAAGCGATTCC
TCGTTCGAAGAAGCCTCATCGGAAGGTGAACTGTCCCTCGACAGCAGAAT
GGCACAGCACGATCTGGCAGAGGAAATCCTAGACTGCAGTACCGGTGATC
ACTGA
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