mRNA_Ecto-sp6_S_contig98.18790.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18790.1
Unique NamemRNA_Ecto-sp6_S_contig98.18790.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:501946..502149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size204
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_002430.1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350606.3428936-CDS-Ecto-sp6_S_contig98:501945..5021131682350606.3428936-CDS-Ecto-sp6_S_contig98:501945..502113Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 501946..502113 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350606.351651-UTR-Ecto-sp6_S_contig98:502113..5021491682350606.351651-UTR-Ecto-sp6_S_contig98:502113..502149Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig98 502114..502149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18790.1prot_Ecto-sp6_S_contig98.18790.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 501946..502113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18790.1

>prot_Ecto-sp6_S_contig98.18790.1 ID=prot_Ecto-sp6_S_contig98.18790.1|Name=mRNA_Ecto-sp6_S_contig98.18790.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=56bp
MSQRGQSTFLCIRRPPVPCIRLRPGNHHLLGIGSKTGLRHPTAPPSIRLD
YHVEA*
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mRNA from alignment at Ecto-sp6_S_contig98:501946..502149+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18790.1 ID=mRNA_Ecto-sp6_S_contig98.18790.1|Name=mRNA_Ecto-sp6_S_contig98.18790.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:501946..502149+ (Ectocarpus species6 EcLAC_371)
ATGAGCCAGCGAGGGCAATCCACTTTCCTATGCATACGTCGACCACCAGT
TCCGTGCATACGTCTTCGACCAGGCAATCACCATCTTCTCGGAATCGGGT
CAAAGACCGGGCTCCGTCACCCAACGGCACCCCCATCGATCAGGCTGGAC
TATCATGTGGAAGCGTAGAAACTCCTATCGCCCGAGTTCGCCCGGCGAAA
CAGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:501946..502149+

>mRNA_Ecto-sp6_S_contig98.18790.1 ID=mRNA_Ecto-sp6_S_contig98.18790.1|Name=mRNA_Ecto-sp6_S_contig98.18790.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:501946..502149+ (Ectocarpus species6 EcLAC_371)
ATGAGCCAGCGAGGGCAATCCACTTTCCTATGCATACGTCGACCACCAGT
TCCGTGCATACGTCTTCGACCAGGCAATCACCATCTTCTCGGAATCGGGT
CAAAGACCGGGCTCCGTCACCCAACGGCACCCCCATCGATCAGGCTGGAC
TATCATGTGGAAGCGTAG
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