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Homology
BLAST of mRNA_Ecto-sp6_S_contig98.18776.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI) HSP 1 Score: 267 bits (683), Expect = 2.500e-81 Identity = 293/359 (81.62%), Postives = 299/359 (83.29%), Query Frame = 1
Query: 1 MIVKYEGAIHCGTMEGQGRAEYDDGEA------------------RMWKNGMRHGTGTLTFTNGSTYSGSWDKDXXXXXXXXXXXXXXXXXXXXXXXXXXXKDGMMSXXXXXXXXXXXXXXXXXXXXXXXXXXRQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWKAGSFHGQGEYHFADSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXDLWCDLRHGHGIHSGPDSTXXXXXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 1023
MIVKYEGAI+ GTMEGQGRAEYDDGE XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXRQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWK+G+FHGQGEYHFA+SGDVYVXXXXXXXXXXXXXXXXXXXXXXXXX LWCDLRHGHG+HSGPDST XXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXX +GRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY
Sbjct: 1 MIVKYEGAIYHGTMEGQGRAEYDDGEVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWKSGAFHGQGEYHFANSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXXLWCDLRHGHGVHSGPDSTYDGXXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXXERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 359
BLAST of mRNA_Ecto-sp6_S_contig98.18776.1 vs. uniprot
Match: D7G0U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U9_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 1.280e-5 Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1
Query: 403 VAATGGENEWYDGQWKAGSFHGQGEYHFADSGDVYV 510
AATGGENEWYD QWKAG+ HGQG FA SGD+ V
Sbjct: 41 AAATGGENEWYDKQWKAGACHGQGGIRFAGSGDMCV 76
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 266.2 |
| Seed ortholog evalue | 2.2e-68 |
| Seed eggNOG ortholog | 2880.D7G0U8 |
| Model size | 1641 |
| Hectar predicted targeting category | other localisation |
| Exons | 9 |
| EggNOG free text desc. | Translation initiation factor IF-2, N-terminal region |
| EggNOG OGs | COG5253@1,KOG0229@2759 |
| Ec32 ortholog description | MORN motif |
| Ec32 ortholog | Ec-23_002230.1 |
| Cds size | 1026 |
| COG Functional cat. | T |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350605.0336454-CDS-Ecto-sp6_S_contig98:343319..343401 | 1682350605.0336454-CDS-Ecto-sp6_S_contig98:343319..343401 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 343320..343401 + |
| 1682350605.0457637-CDS-Ecto-sp6_S_contig98:344019..344051 | 1682350605.0457637-CDS-Ecto-sp6_S_contig98:344019..344051 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 344020..344051 + |
| 1682350605.056222-CDS-Ecto-sp6_S_contig98:344778..344848 | 1682350605.056222-CDS-Ecto-sp6_S_contig98:344778..344848 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 344779..344848 + |
| 1682350605.0670464-CDS-Ecto-sp6_S_contig98:345644..345733 | 1682350605.0670464-CDS-Ecto-sp6_S_contig98:345644..345733 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 345645..345733 + |
| 1682350605.0773277-CDS-Ecto-sp6_S_contig98:345877..346076 | 1682350605.0773277-CDS-Ecto-sp6_S_contig98:345877..346076 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 345878..346076 + |
| 1682350605.0877025-CDS-Ecto-sp6_S_contig98:346383..346494 | 1682350605.0877025-CDS-Ecto-sp6_S_contig98:346383..346494 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 346384..346494 + |
| 1682350605.0976622-CDS-Ecto-sp6_S_contig98:346653..346803 | 1682350605.0976622-CDS-Ecto-sp6_S_contig98:346653..346803 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 346654..346803 + |
| 1682350605.108706-CDS-Ecto-sp6_S_contig98:347416..347543 | 1682350605.108706-CDS-Ecto-sp6_S_contig98:347416..347543 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 347417..347543 + |
| 1682350605.118895-CDS-Ecto-sp6_S_contig98:347750..347916 | 1682350605.118895-CDS-Ecto-sp6_S_contig98:347750..347916 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig98 347751..347916 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350605.1291037-UTR-Ecto-sp6_S_contig98:347916..348531 | 1682350605.1291037-UTR-Ecto-sp6_S_contig98:347916..348531 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig98 347917..348531 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig98.18776.1 >prot_Ecto-sp6_S_contig98.18776.1 ID=prot_Ecto-sp6_S_contig98.18776.1|Name=mRNA_Ecto-sp6_S_contig98.18776.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=342bp
MIVKYEGAIHCGTMEGQGRAEYDDGEARMWKNGMRHGTGTLTFTNGSTYS GSWDKDARQGQDGQACGAGTQTFGNGDRYDGDWKDGMMSGKGTYVSANGD RYEGEWTDDEKNGKGRQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWK AGSFHGQGEYHFADSGDVYVGSWVGNQMHGKGKIVYGGDGGEYQGDLWCD LRHGHGIHSGPDSTYDGAWSSDRRHGHGKLSDKDGNVFEGFFREGGWDNG QLTGHATVQYKNGDRYTGGFEKGRRSGEGTMFAAKTGYEFTGTFEKGVKN GSGRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY* back to topmRNA from alignment at Ecto-sp6_S_contig98:343320..348531+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig98.18776.1 ID=mRNA_Ecto-sp6_S_contig98.18776.1|Name=mRNA_Ecto-sp6_S_contig98.18776.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5212bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:343320..348531+ (Ectocarpus species6 EcLAC_371) ATGATCGTCAAATACGAAGGAGCCATCCACTGCGGCACCATGGAAGGCCA
AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTTTCCTCACCGCTCTTC
GCGAGTGATCTGCCGTCAACTACTGAAACGGGTGTTTCATTCCTAGAGTG
GGACAGTCAAGAGGAGAATGGTTGCTGGTCTCTCCGAGCTAACCAAGCAA
GAGCACTGACCATGTGCCCTGGTTATCACCGAATGAACGGTACTCAATAG
AGGATACTGTCGTGATTGATATTCCTTTGTGGAAAAACTTACCTCTTCAA
GAAACGATGGGCTCAGACTCTGTTGGCTCAGCCGTAGGAGCGGCCGATGC
ACCCCCTTTGCTATTTTGAGCATATTTTTTCCACGTGATGCACTTCACTG
CTTGGATCCGTGGTGCTTCATCCCTGGATTAAGGTAGGTGCTCGCCAATG
GATATTCACTGCATTTAGTTATCGTTGTGCGTTCGGGCTGGCTTGGTCAC
AGCTGTGGTTTTCCTGAACAATGCGGCCGCACTTGCAGCGAACAGCATGT
ACTGCAATCATCGTCCGAAACCTCGGATTTTCTCACCCTACCGGGGTGCT
GTTCCACGCCGCCCCGTTCAAGTTTCCCCTCCTCTCCTCTTCCCTGATCC
CTCTACGCTGCCTTGCTTCTTGGATCCTATCTCGCATCAGGCGTATGAAG
GAATGTGGAAGAATGGCATGCGTCATGGCACGGTGAGATGGGAGAAATGT
CCAGCACTCACAGGAGTGTGCGTCTCTGCTGTGATGTAGAAATACACTGA
TCTTTGCTTCGTAGGTCATCATCTCGTCTCACTTCGAGTTAAACGCGATA
CTCGTGCTACGGACATGGCTACAAACAGTCAAGCAAGAGCCAGTCGGCTT
CTACTGTAGTCAGGTAGTCCTTGAACGTTGGCTGGGCATGCTGCTGCCAT
CACTATATGCTGGGCCGAAATGAAATCATAAGCAACAGACCCATGCAATT
CTTCAAATCACGTTCTGTCCGCGGAGCTGCCAGCAAGTATTGCACACGCT
GGCTCTCGGAGTTCAAAGATTTGGTTCTACTCACCGCAGGCGTATCGAGG
TCTTGCGAATGACTTCAATGAAAATGGAACTTTCTACTCACTTCTTTCCG
TCCCATTCGTCTTGGATTGCTGTGGATGACCAACATCTGAGAATGGGCGA
TAACCTGGCATATTTTGTTCAAATGTGATTGATTCATCCACCAGTGTCTG
GAGCAACGGACAGTATACGTCGTGTAACCCGTTTCCGTGAAGCTTTCATT
TCCAGCCGAGACGTTTCTGGCGACATCGATTAACCACCTATCCCAGTAAA
GTCACAGTTGGGCCAACGTCGCTCACGCGTCTCACGATCGCCAAACCGTC
AACCATTTCCTGATGTAATGAGGCAACCCGTACTTCACTCCCGACTAATT
TGTTGGAAGGGTACACTCACGTTCACGAACGGTTCGACCTACAGCGGCTC
CTGGGATAAAGATGCTAGACAAGGCCAAGGTATGCCGTGGAAATGTTGGG
ATATGAGGATGTACACTTCATTCCGCAATGTCGAGGGCATTTCAGGGAGA
CCCATTGGCGTTTGAGTCGAAATGAAAGGTGCTCCGAATGGAAGTGAAAT
GGAAGCCTCGAAGCCAGAGGATGGGTCGTGGCGGGGTGATTCTTGCCAAA
TGGGATAAGTATTTCATTTCTGACCTCGACAACATTTGGTGCATGTGGAC
TCTCTGTGGGCATAAAAAGCAAGGCTTTTGACTACACTCAAATCTTCAGT
TGTGATCCAGATGAAGATGGTCCACATCTAGTGTATCAATGGTTGAGGGA
TGATGCCACGCATTAAATACGGTTGAACTCGACGTTGCTATCGGTCTCCC
TGACGTTCATACCCACACGGCGAAAAGAGGTATCGAGATCACGGACCGGC
GCATCCGTACATTCCCACCACAAAGCCGGCCTATCGTGGCCACGTGAGAG
TCGTTCGCTTTCGAATCGAGACAACCACGAATCATACCGACCCTCTCCAG
GTTGGCGTATGCTGCGGGTGATTGTGGTACTCCTCAATCCGCCCATTAGT
GAATATTCCTCAGGACCCGGTATTCGCAGGGGACGCGTTCTCAGCACATG
GCTCAAACGCGCGCTTTTCTCGCTGACGACCAAGTCTACAGATGGAATTC
CTGCATGCCTTTTGTGAAATTTCCCGAGGGAGTGAATCGATCAAGAATCG
CGTGAAAGTGTTTGTGCATGCCTCCAGGAACATGCCACTACACCAACGGT
AATACCTACACGGGTTCATGGAAAGATGGACAAGCGTGTGGTGCCGGGAC
ACAGACCTTCGGTAACGGTGATCGCTACGACGGAGATTGGAAAGATGGAA
TGATGAGCGGCAAGGTAGGTTCCGCCCGCATGCTACTTGACGTATGCAGC
AGTGAGTTTTCAAAGGCTTCATGCCGCCGTAGCTTCAGACGGTTCCCCTG
AAGATCCAATGCCGCTCGCCGAGTCGGATTCGGCGGTCCGCTGGGTGATG
TCCACCAGGGTACCTACGTGAGTGCGAATGGAGATAGGTACGAAGGGGAG
TGGACGGACGATGAGAAGAACGGCAAGGGGCGTCAGACATTTGCCAGCGG
TGGCGGGGGCGGCGGCAGAGGGGATGAACCCGAGAAGGTGGCAGCTACCG
GTGGTGAGAACGAGTGGTACGACGGGCAGTGGAAAGCTGGATCATTTCAC
GGTCAAGGTGCGCTTTCCTCCTACTAACGCCAACAGAGGAAGCAAGCATG
AAAAAATTCTGTAGTCACTGTGTGAAACATATCTGACCCTTGTCCACACG
TGGATGGCTTTCCGGCCCACTGCAGACAACAAGTAGATGACTACGCGTCG
TCTACAAAACGTTTTCCTATGGGTCCATTCACCCCCGTAACATATGAATT
ACCGCTTGGGAACACAATGCTGCCCTGGTGCGATCTCCGCACACTATCGT
GGCGGTCAATGCGAAATTTTTAGCTGATATATTTGCCTGCCCCAAGCGCA
CGTTTGGTACACAGGAGAATACCACTTCGCCGATAGCGGCGACGTGTATG
TCGGCTCCTGGGTGGGGAACCAAATGCACGGGAAGGGGAAGATCGTGTAT
GGCGGTGACGGTGGAGAGTACCAAGGTGGGCCTGCGTCCCAACTACAGAG
CGTTGCATAGAGCAGGGCATCTCACACCACCAACTGAACCCGAGATCAAG
TGAATGGTTGAGTGAATCGTCTGAATGTGGGGGCATCCTATCATTCGCAT
GGGGTATTGCTGACGAACCGCCCATACTCGACAGGTGACCTATGGTGTGA
TCTTCGACACGGTCACGGCATACACAGTGGCCCCGACTCTACCTATGACG
GTGCCTGGAGCAGCGACCGCAGGCACGGCCATGGAAAGCTCAGTGACAAG
GACGGGAACGTGTTCGAGGGTTTCTTCAGAGAAGGTTTGCACCGGAATCA
ACATTTGAACTGGGTATTCCGCGCGTAGAACACGAGACACTGATACTGGA
GGTAGTTGAGGATTTTGTGGGTATTAGTGCAGCTGCCGGTGGCGACACGA
TGATAGCAATCATCCCTTGTCGCGCATTGACTGCGGTACCGTAATGCTTC
ACCGCCAGCATCACCGTTCGGTGATTTTTCACGTCCCTCTCCACGCAGGA
GAAAAGCATGGCAACGGTCAACTCAAGTCCGCGGCAGGCGACGAGATTGA
AGGTGGCGACAAGGCCGTTCTCGTCTGTATTCGAAGGGCCTCCGTTTAAC
GTGCCTTCGTAGCATTCATGAGATTTTTGTCATTGCTGCCTCACGACAGA
GTGAAAAACTGCGTTGGTGGCGATGATGAGTATCTTGGCCTTATTCACAA
AAATCGCACGTGGTACCTGTGGTTGACGGTGCTCGGTCTTTGGGCATGGA
CTTGGTTACACAGGGACGGTATCGAAAACTAAGATTTTCCCAACTGGCCA
GGCGGTGAAAATTCCTCTGATGCTTGTTCTACCTTCCTGGTACCTTCCTG
GTATTACGGAACGCATAACACTTCCGTGAATTGTGTCGAGTGGAAAGGTG
GGTGGGACAACGGGCAGCTCACCGGTCATGCGACGGTTCAGTACAAGAAC
GGTGATCGGTACACCGGCGGCTTCGAAAAGGGCCGGAGGAGCGGCGAGGG
AACTATGTTCGCCGCAAAAACGGGGTGAGGCAACACTGGAGAATCGTCAT
TGTTGAAATGCATGGGATTGTTCAGTACGACCTCTGGAATGAATCTCCGC
GATGTTGTGGTTCTGGGAGTAAAGGCGCTGTCGCCGTCTGGGGGGTTATT
GAGGATTGTCATCTTCAGATCGAAACACCCTCGAACCGACCGAAAGCTCT
CGCTGCCGTTGCTCTCTTGAAATCGTGAAAGCTACGAGTTCACCGGCACC
TTCGAGAAGGGCGTGAAGAACGGTTCGGGACGTTTGCGCCTTCCGTGCGG
CGCGAGCGTAGAAGGCCTGTGGATATTGGGCAATCTCGTCGGGAACTCGA
AATTTTCGTTTGCACCTGACTCCGAGTGGAACGACCCGAGTTACTGATGC
TTGGCGATCCTTTTGCGTTCATGGTCTCGACAATCACGGAGGTCTGCGTA
GTCGCGCCGTCGCGTTTCCTTGGCAAGAAGACTGCGCCGATGCGTTGTCC
CGAAAATGCAGTGCCGAAAATGCAATGAGTCAACCAAGTTTGGGCCGGTA
CATTACCCTAGGTGATTCCGTAGTGACAATCATTTTTTGCCATCGATAAA
GTCTCTACGTAGGTGCGGAGGGTTTCGTTGATGAAGATGTATCGCCCGGA
GTCGGACATGGTGATTCCCCCGGGGCTCCCATTCATTCCTCTTTTTTTAT
GTGCGCCCTCCATTTCTACTCAAGCAAGTACTTTTAAAATTAGCCATCCC
CCCTCGCATGTTCGAGTTGACGGGCTGTTGTTTTCACGAAGAGGGGGGCA
GTGATCAGGATCTGTGAACCCCGTATGGCAATGTCAAGGTGTTGTCAAAG
CACGATCATCAGTAGAGCGCGTGCTCTCAAGTGGGACAAGTGCTAAGGGA
ACGAGGTCATCAGCTTGTGAGATGTCTGTAGGGGGGGCGTGCCCTTTACG
TTTTACATGCCTTAGCGGTTAGACCATTCGCCACGCGTCCTCAAGATGAC
GGAGCATTGTTC back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig98:343320..348531+ >mRNA_Ecto-sp6_S_contig98.18776.1 ID=mRNA_Ecto-sp6_S_contig98.18776.1|Name=mRNA_Ecto-sp6_S_contig98.18776.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:343320..348531+ (Ectocarpus species6 EcLAC_371) ATGATCGTCAAATACGAAGGAGCCATCCACTGCGGCACCATGGAAGGCCA AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGAATGTGGAAGAATGGCA TGCGTCATGGCACGGGTACACTCACGTTCACGAACGGTTCGACCTACAGC GGCTCCTGGGATAAAGATGCTAGACAAGGCCAAGATGGACAAGCGTGTGG TGCCGGGACACAGACCTTCGGTAACGGTGATCGCTACGACGGAGATTGGA AAGATGGAATGATGAGCGGCAAGGGTACCTACGTGAGTGCGAATGGAGAT AGGTACGAAGGGGAGTGGACGGACGATGAGAAGAACGGCAAGGGGCGTCA GACATTTGCCAGCGGTGGCGGGGGCGGCGGCAGAGGGGATGAACCCGAGA AGGTGGCAGCTACCGGTGGTGAGAACGAGTGGTACGACGGGCAGTGGAAA GCTGGATCATTTCACGGTCAAGGAGAATACCACTTCGCCGATAGCGGCGA CGTGTATGTCGGCTCCTGGGTGGGGAACCAAATGCACGGGAAGGGGAAGA TCGTGTATGGCGGTGACGGTGGAGAGTACCAAGGTGACCTATGGTGTGAT CTTCGACACGGTCACGGCATACACAGTGGCCCCGACTCTACCTATGACGG TGCCTGGAGCAGCGACCGCAGGCACGGCCATGGAAAGCTCAGTGACAAGG ACGGGAACGTGTTCGAGGGTTTCTTCAGAGAAGGTGGGTGGGACAACGGG CAGCTCACCGGTCATGCGACGGTTCAGTACAAGAACGGTGATCGGTACAC CGGCGGCTTCGAAAAGGGCCGGAGGAGCGGCGAGGGAACTATGTTCGCCG CAAAAACGGGCTACGAGTTCACCGGCACCTTCGAGAAGGGCGTGAAGAAC GGTTCGGGACGTTTGCGCCTTCCGTGCGGCGCGAGCGTAGAAGGCCTGTG GATATTGGGCAATCTCGTCGGGAACTCGAAATTTTCGTTTGCACCTGACT CCGAGTGGAACGACCCGAGTTACTGA back to top
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