mRNA_Ecto-sp6_S_contig98.18776.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18776.1
Unique NamemRNA_Ecto-sp6_S_contig98.18776.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig98.18776.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 2.500e-81
Identity = 293/359 (81.62%), Postives = 299/359 (83.29%), Query Frame = 1
Query:    1 MIVKYEGAIHCGTMEGQGRAEYDDGEA------------------RMWKNGMRHGTGTLTFTNGSTYSGSWDKDXXXXXXXXXXXXXXXXXXXXXXXXXXXKDGMMSXXXXXXXXXXXXXXXXXXXXXXXXXXRQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWKAGSFHGQGEYHFADSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXDLWCDLRHGHGIHSGPDSTXXXXXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 1023
            MIVKYEGAI+ GTMEGQGRAEYDDGE                                                XXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXRQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWK+G+FHGQGEYHFA+SGDVYVXXXXXXXXXXXXXXXXXXXXXXXXX LWCDLRHGHG+HSGPDST   XXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXX +GRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY
Sbjct:    1 MIVKYEGAIYHGTMEGQGRAEYDDGEVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWKSGAFHGQGEYHFANSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXXLWCDLRHGHGVHSGPDSTYDGXXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXXERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 359          
BLAST of mRNA_Ecto-sp6_S_contig98.18776.1 vs. uniprot
Match: D7G0U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U9_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.280e-5
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1
Query:  403 VAATGGENEWYDGQWKAGSFHGQGEYHFADSGDVYV 510
             AATGGENEWYD QWKAG+ HGQG   FA SGD+ V
Sbjct:   41 AAATGGENEWYDKQWKAGACHGQGGIRFAGSGDMCV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0U8_ECTSI2.500e-8181.62Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=... [more]
D7G0U9_ECTSI1.280e-572.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:343320..348531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score266.2
Seed ortholog evalue2.2e-68
Seed eggNOG ortholog2880.D7G0U8
Model size1641
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-23_002230.1
Cds size1026
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18776.1prot_Ecto-sp6_S_contig98.18776.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 343320..347916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350605.0336454-CDS-Ecto-sp6_S_contig98:343319..3434011682350605.0336454-CDS-Ecto-sp6_S_contig98:343319..343401Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 343320..343401 +
1682350605.0457637-CDS-Ecto-sp6_S_contig98:344019..3440511682350605.0457637-CDS-Ecto-sp6_S_contig98:344019..344051Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 344020..344051 +
1682350605.056222-CDS-Ecto-sp6_S_contig98:344778..3448481682350605.056222-CDS-Ecto-sp6_S_contig98:344778..344848Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 344779..344848 +
1682350605.0670464-CDS-Ecto-sp6_S_contig98:345644..3457331682350605.0670464-CDS-Ecto-sp6_S_contig98:345644..345733Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 345645..345733 +
1682350605.0773277-CDS-Ecto-sp6_S_contig98:345877..3460761682350605.0773277-CDS-Ecto-sp6_S_contig98:345877..346076Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 345878..346076 +
1682350605.0877025-CDS-Ecto-sp6_S_contig98:346383..3464941682350605.0877025-CDS-Ecto-sp6_S_contig98:346383..346494Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 346384..346494 +
1682350605.0976622-CDS-Ecto-sp6_S_contig98:346653..3468031682350605.0976622-CDS-Ecto-sp6_S_contig98:346653..346803Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 346654..346803 +
1682350605.108706-CDS-Ecto-sp6_S_contig98:347416..3475431682350605.108706-CDS-Ecto-sp6_S_contig98:347416..347543Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 347417..347543 +
1682350605.118895-CDS-Ecto-sp6_S_contig98:347750..3479161682350605.118895-CDS-Ecto-sp6_S_contig98:347750..347916Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 347751..347916 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350605.1291037-UTR-Ecto-sp6_S_contig98:347916..3485311682350605.1291037-UTR-Ecto-sp6_S_contig98:347916..348531Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig98 347917..348531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18776.1

>prot_Ecto-sp6_S_contig98.18776.1 ID=prot_Ecto-sp6_S_contig98.18776.1|Name=mRNA_Ecto-sp6_S_contig98.18776.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=342bp
MIVKYEGAIHCGTMEGQGRAEYDDGEARMWKNGMRHGTGTLTFTNGSTYS
GSWDKDARQGQDGQACGAGTQTFGNGDRYDGDWKDGMMSGKGTYVSANGD
RYEGEWTDDEKNGKGRQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWK
AGSFHGQGEYHFADSGDVYVGSWVGNQMHGKGKIVYGGDGGEYQGDLWCD
LRHGHGIHSGPDSTYDGAWSSDRRHGHGKLSDKDGNVFEGFFREGGWDNG
QLTGHATVQYKNGDRYTGGFEKGRRSGEGTMFAAKTGYEFTGTFEKGVKN
GSGRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY*
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mRNA from alignment at Ecto-sp6_S_contig98:343320..348531+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18776.1 ID=mRNA_Ecto-sp6_S_contig98.18776.1|Name=mRNA_Ecto-sp6_S_contig98.18776.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5212bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:343320..348531+ (Ectocarpus species6 EcLAC_371)
ATGATCGTCAAATACGAAGGAGCCATCCACTGCGGCACCATGGAAGGCCA AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGTTTCCTCACCGCTCTTC GCGAGTGATCTGCCGTCAACTACTGAAACGGGTGTTTCATTCCTAGAGTG GGACAGTCAAGAGGAGAATGGTTGCTGGTCTCTCCGAGCTAACCAAGCAA GAGCACTGACCATGTGCCCTGGTTATCACCGAATGAACGGTACTCAATAG AGGATACTGTCGTGATTGATATTCCTTTGTGGAAAAACTTACCTCTTCAA GAAACGATGGGCTCAGACTCTGTTGGCTCAGCCGTAGGAGCGGCCGATGC ACCCCCTTTGCTATTTTGAGCATATTTTTTCCACGTGATGCACTTCACTG CTTGGATCCGTGGTGCTTCATCCCTGGATTAAGGTAGGTGCTCGCCAATG GATATTCACTGCATTTAGTTATCGTTGTGCGTTCGGGCTGGCTTGGTCAC AGCTGTGGTTTTCCTGAACAATGCGGCCGCACTTGCAGCGAACAGCATGT ACTGCAATCATCGTCCGAAACCTCGGATTTTCTCACCCTACCGGGGTGCT GTTCCACGCCGCCCCGTTCAAGTTTCCCCTCCTCTCCTCTTCCCTGATCC CTCTACGCTGCCTTGCTTCTTGGATCCTATCTCGCATCAGGCGTATGAAG GAATGTGGAAGAATGGCATGCGTCATGGCACGGTGAGATGGGAGAAATGT CCAGCACTCACAGGAGTGTGCGTCTCTGCTGTGATGTAGAAATACACTGA TCTTTGCTTCGTAGGTCATCATCTCGTCTCACTTCGAGTTAAACGCGATA CTCGTGCTACGGACATGGCTACAAACAGTCAAGCAAGAGCCAGTCGGCTT CTACTGTAGTCAGGTAGTCCTTGAACGTTGGCTGGGCATGCTGCTGCCAT CACTATATGCTGGGCCGAAATGAAATCATAAGCAACAGACCCATGCAATT CTTCAAATCACGTTCTGTCCGCGGAGCTGCCAGCAAGTATTGCACACGCT GGCTCTCGGAGTTCAAAGATTTGGTTCTACTCACCGCAGGCGTATCGAGG TCTTGCGAATGACTTCAATGAAAATGGAACTTTCTACTCACTTCTTTCCG TCCCATTCGTCTTGGATTGCTGTGGATGACCAACATCTGAGAATGGGCGA TAACCTGGCATATTTTGTTCAAATGTGATTGATTCATCCACCAGTGTCTG GAGCAACGGACAGTATACGTCGTGTAACCCGTTTCCGTGAAGCTTTCATT TCCAGCCGAGACGTTTCTGGCGACATCGATTAACCACCTATCCCAGTAAA GTCACAGTTGGGCCAACGTCGCTCACGCGTCTCACGATCGCCAAACCGTC AACCATTTCCTGATGTAATGAGGCAACCCGTACTTCACTCCCGACTAATT TGTTGGAAGGGTACACTCACGTTCACGAACGGTTCGACCTACAGCGGCTC CTGGGATAAAGATGCTAGACAAGGCCAAGGTATGCCGTGGAAATGTTGGG ATATGAGGATGTACACTTCATTCCGCAATGTCGAGGGCATTTCAGGGAGA CCCATTGGCGTTTGAGTCGAAATGAAAGGTGCTCCGAATGGAAGTGAAAT GGAAGCCTCGAAGCCAGAGGATGGGTCGTGGCGGGGTGATTCTTGCCAAA TGGGATAAGTATTTCATTTCTGACCTCGACAACATTTGGTGCATGTGGAC TCTCTGTGGGCATAAAAAGCAAGGCTTTTGACTACACTCAAATCTTCAGT TGTGATCCAGATGAAGATGGTCCACATCTAGTGTATCAATGGTTGAGGGA TGATGCCACGCATTAAATACGGTTGAACTCGACGTTGCTATCGGTCTCCC TGACGTTCATACCCACACGGCGAAAAGAGGTATCGAGATCACGGACCGGC GCATCCGTACATTCCCACCACAAAGCCGGCCTATCGTGGCCACGTGAGAG TCGTTCGCTTTCGAATCGAGACAACCACGAATCATACCGACCCTCTCCAG GTTGGCGTATGCTGCGGGTGATTGTGGTACTCCTCAATCCGCCCATTAGT GAATATTCCTCAGGACCCGGTATTCGCAGGGGACGCGTTCTCAGCACATG GCTCAAACGCGCGCTTTTCTCGCTGACGACCAAGTCTACAGATGGAATTC CTGCATGCCTTTTGTGAAATTTCCCGAGGGAGTGAATCGATCAAGAATCG CGTGAAAGTGTTTGTGCATGCCTCCAGGAACATGCCACTACACCAACGGT AATACCTACACGGGTTCATGGAAAGATGGACAAGCGTGTGGTGCCGGGAC ACAGACCTTCGGTAACGGTGATCGCTACGACGGAGATTGGAAAGATGGAA TGATGAGCGGCAAGGTAGGTTCCGCCCGCATGCTACTTGACGTATGCAGC AGTGAGTTTTCAAAGGCTTCATGCCGCCGTAGCTTCAGACGGTTCCCCTG AAGATCCAATGCCGCTCGCCGAGTCGGATTCGGCGGTCCGCTGGGTGATG TCCACCAGGGTACCTACGTGAGTGCGAATGGAGATAGGTACGAAGGGGAG TGGACGGACGATGAGAAGAACGGCAAGGGGCGTCAGACATTTGCCAGCGG TGGCGGGGGCGGCGGCAGAGGGGATGAACCCGAGAAGGTGGCAGCTACCG GTGGTGAGAACGAGTGGTACGACGGGCAGTGGAAAGCTGGATCATTTCAC GGTCAAGGTGCGCTTTCCTCCTACTAACGCCAACAGAGGAAGCAAGCATG AAAAAATTCTGTAGTCACTGTGTGAAACATATCTGACCCTTGTCCACACG TGGATGGCTTTCCGGCCCACTGCAGACAACAAGTAGATGACTACGCGTCG TCTACAAAACGTTTTCCTATGGGTCCATTCACCCCCGTAACATATGAATT ACCGCTTGGGAACACAATGCTGCCCTGGTGCGATCTCCGCACACTATCGT GGCGGTCAATGCGAAATTTTTAGCTGATATATTTGCCTGCCCCAAGCGCA CGTTTGGTACACAGGAGAATACCACTTCGCCGATAGCGGCGACGTGTATG TCGGCTCCTGGGTGGGGAACCAAATGCACGGGAAGGGGAAGATCGTGTAT GGCGGTGACGGTGGAGAGTACCAAGGTGGGCCTGCGTCCCAACTACAGAG CGTTGCATAGAGCAGGGCATCTCACACCACCAACTGAACCCGAGATCAAG TGAATGGTTGAGTGAATCGTCTGAATGTGGGGGCATCCTATCATTCGCAT GGGGTATTGCTGACGAACCGCCCATACTCGACAGGTGACCTATGGTGTGA TCTTCGACACGGTCACGGCATACACAGTGGCCCCGACTCTACCTATGACG GTGCCTGGAGCAGCGACCGCAGGCACGGCCATGGAAAGCTCAGTGACAAG GACGGGAACGTGTTCGAGGGTTTCTTCAGAGAAGGTTTGCACCGGAATCA ACATTTGAACTGGGTATTCCGCGCGTAGAACACGAGACACTGATACTGGA GGTAGTTGAGGATTTTGTGGGTATTAGTGCAGCTGCCGGTGGCGACACGA TGATAGCAATCATCCCTTGTCGCGCATTGACTGCGGTACCGTAATGCTTC ACCGCCAGCATCACCGTTCGGTGATTTTTCACGTCCCTCTCCACGCAGGA GAAAAGCATGGCAACGGTCAACTCAAGTCCGCGGCAGGCGACGAGATTGA AGGTGGCGACAAGGCCGTTCTCGTCTGTATTCGAAGGGCCTCCGTTTAAC GTGCCTTCGTAGCATTCATGAGATTTTTGTCATTGCTGCCTCACGACAGA GTGAAAAACTGCGTTGGTGGCGATGATGAGTATCTTGGCCTTATTCACAA AAATCGCACGTGGTACCTGTGGTTGACGGTGCTCGGTCTTTGGGCATGGA CTTGGTTACACAGGGACGGTATCGAAAACTAAGATTTTCCCAACTGGCCA GGCGGTGAAAATTCCTCTGATGCTTGTTCTACCTTCCTGGTACCTTCCTG GTATTACGGAACGCATAACACTTCCGTGAATTGTGTCGAGTGGAAAGGTG GGTGGGACAACGGGCAGCTCACCGGTCATGCGACGGTTCAGTACAAGAAC GGTGATCGGTACACCGGCGGCTTCGAAAAGGGCCGGAGGAGCGGCGAGGG AACTATGTTCGCCGCAAAAACGGGGTGAGGCAACACTGGAGAATCGTCAT TGTTGAAATGCATGGGATTGTTCAGTACGACCTCTGGAATGAATCTCCGC GATGTTGTGGTTCTGGGAGTAAAGGCGCTGTCGCCGTCTGGGGGGTTATT GAGGATTGTCATCTTCAGATCGAAACACCCTCGAACCGACCGAAAGCTCT CGCTGCCGTTGCTCTCTTGAAATCGTGAAAGCTACGAGTTCACCGGCACC TTCGAGAAGGGCGTGAAGAACGGTTCGGGACGTTTGCGCCTTCCGTGCGG CGCGAGCGTAGAAGGCCTGTGGATATTGGGCAATCTCGTCGGGAACTCGA AATTTTCGTTTGCACCTGACTCCGAGTGGAACGACCCGAGTTACTGATGC TTGGCGATCCTTTTGCGTTCATGGTCTCGACAATCACGGAGGTCTGCGTA GTCGCGCCGTCGCGTTTCCTTGGCAAGAAGACTGCGCCGATGCGTTGTCC CGAAAATGCAGTGCCGAAAATGCAATGAGTCAACCAAGTTTGGGCCGGTA CATTACCCTAGGTGATTCCGTAGTGACAATCATTTTTTGCCATCGATAAA GTCTCTACGTAGGTGCGGAGGGTTTCGTTGATGAAGATGTATCGCCCGGA GTCGGACATGGTGATTCCCCCGGGGCTCCCATTCATTCCTCTTTTTTTAT GTGCGCCCTCCATTTCTACTCAAGCAAGTACTTTTAAAATTAGCCATCCC CCCTCGCATGTTCGAGTTGACGGGCTGTTGTTTTCACGAAGAGGGGGGCA GTGATCAGGATCTGTGAACCCCGTATGGCAATGTCAAGGTGTTGTCAAAG CACGATCATCAGTAGAGCGCGTGCTCTCAAGTGGGACAAGTGCTAAGGGA ACGAGGTCATCAGCTTGTGAGATGTCTGTAGGGGGGGCGTGCCCTTTACG TTTTACATGCCTTAGCGGTTAGACCATTCGCCACGCGTCCTCAAGATGAC GGAGCATTGTTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:343320..348531+

>mRNA_Ecto-sp6_S_contig98.18776.1 ID=mRNA_Ecto-sp6_S_contig98.18776.1|Name=mRNA_Ecto-sp6_S_contig98.18776.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:343320..348531+ (Ectocarpus species6 EcLAC_371)
ATGATCGTCAAATACGAAGGAGCCATCCACTGCGGCACCATGGAAGGCCA
AGGGCGGGCCGAGTACGACGACGGCGAGGCAAGAATGTGGAAGAATGGCA
TGCGTCATGGCACGGGTACACTCACGTTCACGAACGGTTCGACCTACAGC
GGCTCCTGGGATAAAGATGCTAGACAAGGCCAAGATGGACAAGCGTGTGG
TGCCGGGACACAGACCTTCGGTAACGGTGATCGCTACGACGGAGATTGGA
AAGATGGAATGATGAGCGGCAAGGGTACCTACGTGAGTGCGAATGGAGAT
AGGTACGAAGGGGAGTGGACGGACGATGAGAAGAACGGCAAGGGGCGTCA
GACATTTGCCAGCGGTGGCGGGGGCGGCGGCAGAGGGGATGAACCCGAGA
AGGTGGCAGCTACCGGTGGTGAGAACGAGTGGTACGACGGGCAGTGGAAA
GCTGGATCATTTCACGGTCAAGGAGAATACCACTTCGCCGATAGCGGCGA
CGTGTATGTCGGCTCCTGGGTGGGGAACCAAATGCACGGGAAGGGGAAGA
TCGTGTATGGCGGTGACGGTGGAGAGTACCAAGGTGACCTATGGTGTGAT
CTTCGACACGGTCACGGCATACACAGTGGCCCCGACTCTACCTATGACGG
TGCCTGGAGCAGCGACCGCAGGCACGGCCATGGAAAGCTCAGTGACAAGG
ACGGGAACGTGTTCGAGGGTTTCTTCAGAGAAGGTGGGTGGGACAACGGG
CAGCTCACCGGTCATGCGACGGTTCAGTACAAGAACGGTGATCGGTACAC
CGGCGGCTTCGAAAAGGGCCGGAGGAGCGGCGAGGGAACTATGTTCGCCG
CAAAAACGGGCTACGAGTTCACCGGCACCTTCGAGAAGGGCGTGAAGAAC
GGTTCGGGACGTTTGCGCCTTCCGTGCGGCGCGAGCGTAGAAGGCCTGTG
GATATTGGGCAATCTCGTCGGGAACTCGAAATTTTCGTTTGCACCTGACT
CCGAGTGGAACGACCCGAGTTACTGA
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