mRNA_Ecto-sp6_S_contig98.18766.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18766.1
Unique NamemRNA_Ecto-sp6_S_contig98.18766.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18766.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI)

HSP 1 Score: 868 bits (2242), Expect = 5.830e-310
Identity = 447/517 (86.46%), Postives = 459/517 (88.78%), Query Frame = 1 
Query:    1 MTSIPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWEDPPASHLKDDPAKSTMDGGGRQRVDDAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHYMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLEVHFYWAPLCSGPKSVGAMLATVMEAVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPSLSMKVEVGPHEKSEKQAAGIPPNNVRGSSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYAPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDDSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLSSTLFSADEDYGHSADGERGGSF*MDSLSLSLPLLAFLLISLGCFLFRCCRNRGTLAPECQTHGRSRNECDI 1551
            MTS PGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEW+ PPASHLKDDPAKSTMDGGGRQ VDDAGVRRL                                H  G PC  +ERLGKDAME IASKYSFHLIGDSTSRRLGESFVSIFTGRGSIH I QRDRDFSSGNL+VHFYWAPLCSGP+SVGAMLA+VM+AVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLP++S KVEVGPHE SEKQAAGIPP+NVRG SVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRY PGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVD+SVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNGSVL  T+F ADEDYGHSADGE G SF M+SLSLSLPL  FLLISLGCFLFR CRNRGTLAPECQ HGRS NECDI
Sbjct:    1 MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWDAPPASHLKDDPAKSTMDGGGRQHVDDAGVRRL--------------------------------HPAG-PCVSQERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLASVMDAVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTKVEVGPHETSEKQAAGIPPHNVRGGSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTVFLADEDYGHSADGEGGDSFSMNSLSLSLPLSVFLLISLGCFLFRYCRNRGTLAPECQKHGRSPNECDI 484
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BLAST of mRNA_Ecto-sp6_S_contig98.18766.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE)

HSP 1 Score: 863 bits (2231), Expect = 9.820e-308
Identity = 438/521 (84.07%), Postives = 463/521 (88.87%), Query Frame = 1 
Query:    1 MTSIPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWEDPPASHLKDDPAKSTMDGGGRQRVDDAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHYMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLEVHFYWAPLCSGPKSVGAMLATVMEAVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPSLSMKVEVGPHEKSEKQAAGIPPNNVRGSSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYAPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDDSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLSSTLFSADEDYGHSADGERGGSF*MDSLSLSL----PLLAFLLISLGCFLFRCCRNRGTLAPECQTHGRSRNECDI 1551
            MT IPGGRA+VVALLACLASVV AA VYP DPHLDWSEW+DPPASHL +DPAKS MD  GRQ VD+AGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLH+MHSGGLPCGFEERLGK+AMEDIASKYSFH IGDSTSRRLGESFVSIFTGRGS HP+VQRD +FSSGNL+VHFYWAPLCSGP+SVGAML TVM+AV AAKDGKRAVIITA+GVHDAFEL HAANGHGSPSY+S LPQD+VEKDGMRAAALGACRD TTQLVR AAATAVPGT APPVEEEQSPGD + QLP++S   +VG HE S+KQAAGIPPNNVRG SVGAG ED L  ASAPPAASGPLQPLLFLMQNNRY PGSVENAFQEDLH IQRQ VGEWEASEGSKGD GERGLFLVDDSVGLYGNLSCYR+ANPIHFDEPVKLMEGKMLWDLLVLVDNGSVL  TL  A+EDYG SADGE GG F ++ LSLS     PLL FLLI L CFLFR CRNR TLA ECQ HGR+ +EC I
Sbjct:    1 MTRIPGGRAIVVALLACLASVVCAASVYPSDPHLDWSEWDDPPASHLNNDPAKSIMDSNGRQHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLCSGPESVGAMLTTVMDAVLAAKDGKRAVIITAFGVHDAFELQHAANGHGSPSYQSTLPQDIVEKDGMRAAALGACRDATTQLVRTAAATAVPGTAAPPVEEEQSPGDAQHQLPNVS--TQVGRHETSQKQAAGIPPNNVRGGSVGAGKEDAL-DASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQAVGEWEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTLLLANEDYGDSADGEGGGRFSINPLSLSXXXXXPLLVFLLIPLACFLFRYCRNRETLARECQKHGRNPSECYI 518
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BLAST of mRNA_Ecto-sp6_S_contig98.18766.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 4.200e-120
Identity = 218/442 (49.32%), Postives = 266/442 (60.18%), Query Frame = 1 
Query:   43 LACLASVVLAAPVYPRDPHLDWSEWEDPPASHLKDDPAKSTMDG------------GGRQRVDDAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHYMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLEVHFYWAPLCSGPKSVGAMLATVMEAVRAAKDG-KRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPSLSMKVEVGPHEKSEKQAAGIPPNNVRGSSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYAPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDDSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNGS 1329
            L C  S V A    P    LDWSEW DPP + + D+ A S+M+             GG  ++  A VR LV  CA RL+++ D+CG  E P  +D YRL +M SG LPCGFEER   + +ED+ASK++FH IGDST RRLGESFVSIFTG+GS H +V  D DFS+GNLE  FYWAP C G +SVGA LATVM+ V+ AK G KR VIITA+GVHD++EL     G  S SY  ALP D V+   +R A LGAC+ TT QLV+AAAA  +   + P  E+ Q                          +A    PN    S+          GA    AA+ P  PL+FLMQNNRY P S E+ + E+L  IQR  V EWEA EG+  +  E G++LVDDSV L+ NLSCYR  NPIHF EPVKL+EGKMLWDLL LV+  S
Sbjct:   18 LVCFPSAVPAESTQPDHLTLDWSEWIDPPVAPVTDNWATSSMEELLTTPCVDAAQTGGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVMDGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWAD-PTAEKGQW------------------------SKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGN--EDAEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLALVERES 432
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BLAST of mRNA_Ecto-sp6_S_contig98.18766.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 2.960e-49
Identity = 151/416 (36.30%), Postives = 195/416 (46.88%), Query Frame = 1 
Query:  202 GVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHYMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLEVHFYWAPLCSGPKSVGAMLATVMEAV--RAAKDG------------------KRAVIITAYGVHDAFELHHAANGHG-SPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPSLSMKVEVGPHEK----SEKQAAGIPPNNVRG-----SSVGAGNED------------TLLGASAPPAASGPLQPLLFLMQNNRYAPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERG-----LFLVDDSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLL 1308
            GV RLV+ CA +L L    C +   P  QD YR+  M SG   CGFE  +  + + D+A KY F  IGDST+RRL ESFVSI +GR S HP+V    D S G+L+V F WAP CS     G + A V +A+  R++  G                  +R VI TA+GVHDA EL  A      +  Y   LPQ+ V   G  AAAL  CRD T +LV  AAA           +     G+     PSLS     G   +    ++ +  GI    +RG     S V     D                             L+FL+QNN + P S  + F + LH IQ QV+ E  A +G +            +FL+ D   LY ++SCYR    IHF EPVKL+EGKMLW L+
Sbjct:  228 GVHRLVSDCARQLMLPGFSCDE---PVLQDQYRVPLMESGNASCGFETLMPDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVD---GGISAAVRDALGFRSSTYGSGNNNDGXXXXXXENGSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVAAQGPTAAALETCRDATRELVEVAAAXXXXXXXXXXXDGGGDVGNN----PSLSEATGEGGEGQVVVNADGRRDGIADKKLRGGGGVSSEVAVHESDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLV 633
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BLAST of mRNA_Ecto-sp6_S_contig98.18766.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.220e-48
Identity = 138/417 (33.09%), Postives = 188/417 (45.08%), Query Frame = 1 
Query:   88 RDPHLDWSEWEDPPASHLKDDPAKSTMD------GGGRQRVDDAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHYMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLEVHFYWAPLCSGPKSVGAMLATVMEAVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPSLSMKVEVGPHEKSEKQAAGIPPNNVRGSSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYAPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGER-GLFLVDDSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLV 1317
             D  + W  W++   S      + S +D       G   R    G+  LV  CA RL+L    C K         +R+  M SG LPCGFE RL     ED+AS+Y+ H +GDSTSRRL ESF+SI TG  S H      R+ +   L+V+F+WAP C   K+    L  +M+  +A   G+RA+I+TA+GV D+         HG                G   AALG C D    LV+ A        + PP                                A      N+               A++PP        L+FL+QNN + PGS ++ F  DLH IQR++V           D GE+  ++LV D   ++  LSCYR +  IHF++PVKL+EGKMLWDL+ LV
Sbjct:   23 NDQRVSWDGWDEQSQSPDPTTNSPSVVDLDVDSSHGSEYR---GGLHDLVRQCAERLDLPGYTCEKNS---SSADFRIPLMGSGDLPCGFETRLPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYCRQVKNES--LHEIMDN-QALDGGRRAIIVTAFGVWDS--------SHG----------------GGDEAALGVCADAVRSLVQVA--------QPPP--------------------------------AGSTTAENI---------------AASPP--------LVFLLQNNPFLPGSEQDLFLRDLHQIQREIV-----------DSGEQEAVYLVHDRESIFNRLSCYRMSESIHFNDPVKLVEGKMLWDLIELV 332
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BLAST of mRNA_Ecto-sp6_S_contig98.18766.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.650e-46
Identity = 150/443 (33.86%), Postives = 192/443 (43.34%), Query Frame = 1 
Query:  175 GGRQRVDDAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHYMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLEVHFYWAPLCSGPKSVGAMLATVMEAVRAAKDG-------------------KRAVIITAYGVHDAFELHHAANGHG-SPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQL--PSLSMKVEVGPHEK----SEKQAAGIPPNNVRGS-------------------SVGAGNEDTLLGASAPPAASGPLQPL----LFLMQNNRYAPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERG----------------LFLVDDSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLL 1308
            G        GV RLV+ CA +L L    C +   P   D YR+  M SG   CGFE R+  + + D+ASKY F  IGDST+RRL ESFVSI +GR S HP+V    D S G+L+V F WAP CS    V A +   +   R++  G                   +R VI TA+GVHDA EL  A      +  Y   LPQ  V  DG  AAAL  CRD T +LV  AA                           PSLS         +    ++ +  GI    +RG                    S G G+                        +FL+QNN + PGS  + F + LH IQ QV+ E  A + +   G E+                 +FL+ D   LY ++SCYR    IHF EPVKL+EGKMLW L+
Sbjct:  191 GNESAGQPGGVHRLVSDCARQLVLPGFGCDE---PVLADQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVGGGVSAAVRDAL-GFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQAAVATDGPTAAALQTCRDATRELVEVAAXXXXXXXXXXXXXXXXXXXXXXXXXKDPSLSEAXXXXXXXQVAVNADGRRDGIADKKLRGGXXXXXXXXXXXXXEVAVHESDGHGSNXXXXXXXXXXXXXXXXXXXXXXXVFLLQNNPFNPGSEHDYFLQQLHRIQEQVIDEAAAEQAAAKQGCEQHQDCEQXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDRSIHFHEPVKLVEGKMLWHLV 629
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BLAST of mRNA_Ecto-sp6_S_contig98.18766.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.170e-33
Identity = 102/282 (36.17%), Postives = 142/282 (50.35%), Query Frame = 1 
Query:  364 MEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLEVHFYWAPLCSGPKSVGAMLATVMEAVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEE-QSPGDGRRQLPSLSMKVEVGPHEKSEKQAAGIPP-NNVRGSSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYAPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDD 1203
            +ED++S+Y FH +GDST+RRL ESFVSI TG+ S H +V    D SSG+L+V F+WAP+C   +S        + A +      RA+IITA+GVH+A  L+    G   P Y +    D   ++   AAAL  C + T+QLV  A  TA  G  A   +E+  SPG                 H   +    G P     RG+  G G+    +     P       PL+FL+QNN Y PGS E+ F E LH +Q +VV +        G+    G+F++DD
Sbjct:   79 LEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSKIQASIDEIVAAQLRNGDARAIIITAFGVHNAHRLYGDQAGT-LPRYTAPSSHDTFREEDAEAAALNVCEEVTSQLVHVANLTA--GRSASANQEKLYSPG-----------------HRGLDVADEGDPKFGRPRGTWTGGGDVSLSIDDEGLP-------PLVFLLQNNHYFPGSEEDRFLEHLHDVQDRVVRQGAKDIARHGE--NAGVFVLDD 331
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G0V6_ECTSI5.830e-31086.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6U4_9PHAE9.820e-30884.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T6_ECTSI4.200e-12049.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JGU9_9PHAE2.960e-4936.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZD7_ECTSI1.220e-4833.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL3_ECTSI1.650e-4633.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFC3_9PHAE1.170e-3336.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:259350..266210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2662
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_002150.1
Cds size1407
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350603.8315675-CDS-Ecto-sp6_S_contig98:259349..2596911682350603.8315675-CDS-Ecto-sp6_S_contig98:259349..259691Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 259350..259691 +
1682350603.8405225-CDS-Ecto-sp6_S_contig98:263178..2633521682350603.8405225-CDS-Ecto-sp6_S_contig98:263178..263352Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 263179..263352 +
1682350603.8490083-CDS-Ecto-sp6_S_contig98:264064..2649551682350603.8490083-CDS-Ecto-sp6_S_contig98:264064..264955Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 264065..264955 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350603.8571503-UTR-Ecto-sp6_S_contig98:264955..2662101682350603.8571503-UTR-Ecto-sp6_S_contig98:264955..266210Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig98 264956..266210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18766.1prot_Ecto-sp6_S_contig98.18766.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 259350..264955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18766.1

>prot_Ecto-sp6_S_contig98.18766.1 ID=prot_Ecto-sp6_S_contig98.18766.1|Name=mRNA_Ecto-sp6_S_contig98.18766.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=469bp
MTSIPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWEDPPASHLKDD
PAKSTMDGGGRQRVDDAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYR
LHYMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIF
TGRGSIHPIVQRDRDFSSGNLEVHFYWAPLCSGPKSVGAMLATVMEAVRA
AKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAA
ALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPSLSMKVE
VGPHEKSEKQAAGIPPNNVRGSSVGAGNEDTLLGASAPPAASGPLQPLLF
LMQNNRYAPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVD
DSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLSSTLF
SADEDYGHSADGERGGSF*
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mRNA from alignment at Ecto-sp6_S_contig98:259350..266210+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18766.1 ID=mRNA_Ecto-sp6_S_contig98.18766.1|Name=mRNA_Ecto-sp6_S_contig98.18766.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6861bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:259350..266210+ (Ectocarpus species6 EcLAC_371)
ATGACCAGTATCCCCGGCGGCCGGGCCATGGTTGTCGCGTTGCTGGCGTG
CCTTGCGAGTGTAGTGCTCGCCGCCCCGGTATACCCTCGCGACCCGCACC
TGGACTGGAGCGAGTGGGAAGACCCACCAGCGTCTCACCTGAAAGACGAC
CCCGCCAAAAGCACCATGGACGGCGGCGGTCGCCAGCGTGTAGACGACGC
CGGCGTGCGGCGGCTGGTGACGACGTGTGCCCTTCGGTTAGAGCTATCAG
CTGATGTGTGCGGGAAGGGGGAGGTTCCCGACCCGCAAGATGCCTATCGG
TTGCACTACATGCACTCGGGGGGCCTCCCGTGCGGTTTCGAGGTATGTTC
GCTCTCTGTTTTCCTTCTGGTGTTGTTTCGGAATCGGCGCGCAAGGTCGA
ACATTGATGTGGGACACGTGTGTTTGGGCAAGTTTTTATTTTTTGACAAC
ACAAGGTAAGCTCTGGGCGGGCTGCTTGTAGGCAACAGGAAGTTGTTTGC
CGGGAAAAAGCAACTCGACTCAAGTCTGTATCAAACCAAATTGGCTTGTC
ACTACTGTACTCTTCGCTCTGTCAGCCCCAATCCCCCAACACAACTGGTG
TGAGGAATGATACTCTGCACACCGCAGTGCCGAGATTATGTCTTTGAGGG
CAACTCCATCAGTGGAATAGTTACGTACGTCCAGTAGTTTGGGACCTACC
TCATCTTTCGGGCGGCATGAATTTTTTTTTGTCATGATGGGCCATTTCAA
ACAGCAGCAAATTACAGCCTTCGACAGCAGCACTCTCAGAAACAGATCTG
AGCGTGCCCAAAATATAATATATGGGGGTGTTTGATTTAATTAATTGTTT
TTGGGTTTGGGGAGTTTGGGGAGTATATATATATATATATGGAGGCAGGA
CTAGTTGTGTCGGACGCGAGCGGCTTGTGGTCGCCGCTCTTCCGTCTTGT
GCAAAAATCGCCAAAGTCGGAAGTATCGAACTTTAGGCGGGTAAGCTCCC
GGACAGAAGTCTGTCCCCTAGCACACTTCGATACCACTCATGGTGAAAAA
CTCCTTTCTTAACAGCAAAAAAACAACGAATAGCCTTGGTGCCAGGTGTC
AGTCAGTGCAGCCCGGCTTCTGTATGAGCGAAATCGTGTACGGAGGAACA
GTTCTCTACGAACCCTCTCACACTTGCCACTGCTCTGGAAAATTTAATTA
ATCCTACAATCTCAAGTAATTAAGCAATTTTCGGTTTTTAGGAGACGATT
ATCTCAAGTAATTAAGCAGTTTTCGGTTTTTAGGAGACGATATATATGGG
GGGTAACTCAACCCCTTGATGCTGGCTAAATAGAATACAACCTTTCCCGC
CGTTTATACCTGTGCTGCTGTTATCGGTAGAGGACACCATGAAGAGGCGT
CGACATATATATAGGGTGTTTGATTTAATTAATTGTTTTTGGGTTTGGTT
TAATTAATTGTTTTTTGGTTTGGGGAGTACATATGGAGGAAAGATGTGGG
CTGACACGTTCTGGTTTGTTTGCTTCTTGGGTGGTGATATCGAGGATCGT
ACAGCAGCGTAGTATTATAATGGCCTACAATCTCCGCAAATCCCGGCAAA
TTTGACACCCAGTGCCTTGTACTGCTTGTGTTCACCGCCACGGACCGTAC
ACCGCTGAACGGCGGGCGCCAGCATTAGCTACATAGTGACATCAGCTCAT
CCCGCAGTTCAGGAGATTGGGCTCAGGGTTTCCGAAGTCAGTCAAAATCA
ATATCGACCGCCCCCCGACAACAGGCGCGGTAAAGCGGCCCGTTGCGTTC
GCAGGAGCATCCAGCCTTTCTTGCCCGAACTTGCGCAGAATCCGAATTAC
TTCTGGTATGTATTTACCTCACCCCCGTGCGATTACGCTCCGACGCGCGC
AAATCTGTCTATGTTTGCATTCGTCTGCATTCTTGGGGGTATATCAATGT
ACGCATATTTTCTATTTTTCCTTGTGAAGTATATTCCTACTGTAGAACCG
CAGACTTCGCCTCTCACGCGGTTGCTCCAATACGGGTTCATAGAGGGCGC
TTAGATGCTTTCACTGAAGCACCTAACAGTGCTCGAGTTCCGTGCAAACT
TAAACCTTACAGCGAACATTTGGTTTGATTGCCAAGTCGGGTTGCTTTCG
GGGTTGGCATGCTCTCCGAGACCCCCGTAGGCGCTGAACCTCTGTAGAGG
CGTGGTAAACAGCTTGGCGCCTATTCCTGTCCTCTTGACAAATAACGGGA
TCGGGGAAGAAATTTAGGAACGAGCCTCTGGTGAATTTCCCATCTAGGCG
TTCATGGCGCCCCAACGACCGGGTTGACTGGTATCCTACACTTTCTACAG
TTTTGCTAAAACGCCCATGGGACCCCGATGGGCCGCCGCCCATGGGCACT
TTTTTGCCTATGGTTGACCCATGGTTGACCCATTGGCATACCCATGGGTA
GCCCGTGGGCCGCCCATGGGCGGCCCATGGCAACCTATGGGAAGCCCATG
GGCGGCCCATGGGACCCCTCAACCGGAAACAGTGTACTCTATACAGTAGA
GTGCCTGCTTTGGAACGGTCATTATATCGACTAGTATCCCTAGTGCTAAC
CCTAAAACTCTACCCCCAGGCCACACGACACGTGCTAGGCACACACGATA
CGTGCTAGGTTGGCGCTAGTGGCTATGTTCTAGGTTGATGTGCAGTTGGC
TAAGCCCTGGTGGCGAAGTTCTAGGTTAAAGTGCCCATGGGCGGCCCAAG
GGTAACCCGTGGGTGTCCCATGTGTGGTTTAGCAAAACTGTCAGTAGTGT
GGGAGATGGGTCCAGTCGCGCCAAGAACTTAAAGGGGTAACGTTTAATGG
TGCCTCGGGGTGGAAATCTTGCACTATGTCATCACCCCGCATCGTATTTA
GACTTTCATCCACTGGCTTAGAGTGCAACCTTCCGTGGTCCGTTTCCTTG
CAGTCGATCTGCACAGGTTAGCGGCACCAGCGAGCGCTCGAACCACCGCC
TGTCGCTACGTGGTTTTTGTTGCACATGTTTGTGTTTGTGTACTTTCCTG
AAAGTTTGAAGCCCTCCTCTGATGAACCTTGTGCTTCAAAGCATTTTTTG
GCCTAGCGGGTGGCGAAGGGAGGCAGTCAACGGGAACAATGCCTGTAGCG
TGGTGATGTGCCACGTCTGTTTCGGGGCTGATCACGAAAAGTCTCGTCCA
TGCAAAAGTTCTTCTCCGTACACGCCAAGCAACCAGTCTATCCATCTGAT
GCTCCGAACAGCAATGGAGCGTCCGATTGACGTTGGATGCGGCGTATTTA
GCCACGAGCTACCGCCCCTGGGACGCCCTCCCCTGACGGTTTTTTATTGC
TGGGTCCAGTACCGCCTTTGTTTTGATTTTTTCCTTTCTGGTGGCACAAG
CCGCCTGAATTGTCCCAGATAAATACAGCAACGTCCCCAAGTCACAGACC
ACGGCGATATCCTGCTTTTCCTCACCACCCGTGTAGTAGCAGAAACGGCT
CTCGTAAGGTTACACTTTGGTCTTCTTTCTTCGAGTCGCCCTCCTCTTTT
GAGGTGGGCAACCCCGTTCCGTAATGCCGTTCGCTGTTCGGGAACAGTGC
GTTGGCCGCGGGAAGTCGCAATCTTAATTCGAGTATTACCCCGCCTCTTG
TAGTAGGCCATCGTGGGAAGGTTTGACGCCCATTTGGAGATTTTCTCAGA
ATCAGAATCGAAGGGTGGCAAGAGTCGGCATGCGCAATTGATGCTATTGT
TCTTCGCTTCTCGCGTTCTTGCTCGTATGCTGCCCCTGGGAGAGACCCTA
AGCATCCTGCTGGACTTTGTGTGTCGCAGGAGCGCTTGGGGAAAGACGCT
ATGGAGGATATTGCCTCCAAGTATTCGTTCCACTTGATAGGCGACAGCAC
CAGCCGTAGACTCGGGGAGAGTTTTGTGTCGATTTTCACCGGGCGAGGAT
CGATCCACCCAATCGTCCAGAGGGACAGGGACTTTTCTTCAGGGAACCTT
GAGGTGAGAATGAGCACCCCTAAATAGAACGAACACATGTTCACAGCTAT
CCGTCCCGGCACTCGATTGCCGCTACCAATATGGGGGGGTTTGATGGTGT
CGCCTAGAGATCGACCCCTGTCTGTTTCCTTGAAGACGTCACTCTGCGGT
CTGAATCAGGAGTTGCAGTGATGTAAGCTGGTAGACCTAGACGCAAGCCT
GTTGCACTGCGGAAGGCAACCCTTCCTTCTTGACACGTTTCCTTGTGGGG
AAAAATCACTGTAGTGTTCTCGCGTTAAGGCCAAGGCAGGCACGGCAGAT
GATACCCCTTGCGTGACCCCAGTCCGATCTCTTGCGCAGAGTCCGTAAGG
TCGTAGGTGACGCCCCGCGGGTGCTAGCCGTTCGTACGGGCAGAAGAAAA
ATGAAGGAGATAGTGACAATTATCTTTTTGTCCTGGGGAAGGGTCTGGAG
TGCTTGACCATTTTCTCGTGTCGACGGAATTCAAGTCCGGGGCACCTCTT
TCGTCGAGTAGTTAATCGCCGAGCTGTAGCACGCTTCAGTCTCCCATGCA
CTCCTCGATGCTAGGTTTACCACTTGACTTTTCGGGGCGTCACGCACTTT
GTAGGTGGAACTCTTTGGGGGCGTTGAGACGAGGAAAGACGTTGTCAGCA
AGGATTGAGCCAAAATCGCGAAACTCAGCTTATTCGTGAAACTCCCCCGA
CTCCCAAACGCGAAGGTGCACTTCTACTGGGCACCGTTGTGCTCGGGGCC
CAAGAGCGTCGGCGCGATGCTAGCAACCGTCATGGAGGCGGTCCGCGCGG
CGAAGGACGGCAAGCGTGCGGTGATCATCACCGCATACGGCGTCCACGAC
GCGTTTGAGCTGCATCATGCCGCCAACGGGCATGGGAGCCCCTCGTACAA
GAGCGCCCTTCCTCAAGATGTCGTTGAGAAGGACGGCATGAGGGCCGCCG
CGCTTGGCGCTTGCCGGGACACTACCACTCAGCTGGTCAGAGCAGCGGCA
GCAACGGCGGTACCGGGGACCGAAGCGCCACCAGTGGAGGAAGAGCAATC
GCCGGGGGATGGGCGGCGCCAACTGCCGAGCTTGTCAATGAAGGTTGAGG
TTGGACCACACGAGAAATCAGAGAAACAGGCTGCAGGCATCCCACCAAAC
AATGTCAGAGGTAGTTCGGTTGGGGCTGGAAATGAAGACACGCTGCTGGG
CGCATCAGCCCCGCCGGCCGCATCAGGCCCTTTGCAGCCGCTGCTCTTTC
TCATGCAGAACAACAGATATGCCCCCGGCTCTGTGGAGAATGCGTTTCAG
GAAGACCTGCATATAATACAGAGGCAGGTCGTTGGCGAGTGGGAAGCAAG
CGAAGGGTCTAAGGGCGATGGCGGTGAACGAGGATTGTTTCTAGTGGACG
ACAGCGTTGGCTTGTATGGGAACTTGTCCTGTTACCGCAATGCCAACCCA
ATCCACTTCGATGAGCCCGTGAAGCTTATGGAAGGCAAGATGCTTTGGGA
CTTGCTGGTGCTCGTCGACAACGGGAGCGTGTTATCCTCCACCCTCTTTT
CGGCCGACGAAGACTACGGCCATAGTGCTGATGGCGAGCGTGGCGGTAGT
TTTTAAATGGATTCGTTGTCGTTGTCGTTGCCGTTGTTGGCGTTCTTGTT
GATATCTCTTGGTTGTTTCTTGTTTCGATGTTGCCGCAATAGAGGAACGC
TGGCACCAGAGTGCCAGACGCACGGCAGAAGTCGGAATGAGTGCGACATT
TAAGGTGCTGCTGACGGTATGCCTGGCGTGCGGCGTCGATGCACGTAGGT
TGTTCGAATGTCGCTTTTGGCGGTGGGATGTGTCTATTTTCCGGGGAAAC
TGCTCCGCAACCGTAGAGCCGGTGCAATATAGTATATTGCCGAATGTAGT
TAGTCTCTGTCTCGTGTATCCGTCGCGACCGTTAGTTCTTGCACGACGTG
GGCTAGTTAGGTCTTAAACACAGAATCTGCTTCCTCCTTTGTAGTGCGTA
GACTTCCTTAATGTGCTCGGTTGTGTTTTGTGCGTTTGTTCCACGTAGAC
CCATGCGTTGCCTTGTGGAGGCCTCGCTGAGTTGACATTGGTGTTGTTCC
ATGTGCACCGCGTACCTTGTGTTCGGAGTGTTGTGCATCTGCCGAATCCG
TTTCTTTTCGCGGCCGATTTTTTTATTAGCACGATACACAATCTATCTTC
TCGAGGGGTTCGGCTCTTTTGGCGTGCGCCCACACCCTTTGCATCGTCGT
GCACCATATTTGGGCATATCATTAGGCGCTCTGTCCAATTTTTCAGCAGT
GGTGAGTTCGTTTTGTTGTGTGGTTGAGGGAATTGATTTGTACTTATAGC
GGTTGAGTGAATTGACGTCGCCCATTCCACCGTCGCATGAATTCTTATTG
GTGGGCTGATCGTTGTGTGCGTGATGTATTGCAGGGTACGAATGTTGCCC
AAGGCGGGAGTCAACCACGCGCGTACGTGTTCCGCCGTGCGTTGACTACA
CCGATGTGGTCCAACTTTTTCCCCCACAAGCACCTACAGTATCTATGCGT
TCGCCGTACGTTGACTGCACGTATTGCCAATAAGGTGTTTTCGTTTGTGG
TTTCGCGGGGCCAAATTCATCTTTGAAGGAGTGTGGAGGGTTGTTCAACG
CAAGAAAAGCAACAGGCAGGGCTTGGCTGAAACTTGAATATACAGCCAAA
GATCTTGCCTAACCAGTGCTTTTAAAGCAGTTGCTCTGGAGGGCTTCACT
TTCCGTCTCACACATGGCAACGGATTTGGAAGGACATCTCACACATGTCA
ATGGATCTGGACGGACGACCGCAGTTTGCTCGGAAGGGGACACATTTTGG
TTGCCAAACGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:259350..266210+

>mRNA_Ecto-sp6_S_contig98.18766.1 ID=mRNA_Ecto-sp6_S_contig98.18766.1|Name=mRNA_Ecto-sp6_S_contig98.18766.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1407bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:259350..266210+ (Ectocarpus species6 EcLAC_371)
ATGACCAGTATCCCCGGCGGCCGGGCCATGGTTGTCGCGTTGCTGGCGTG
CCTTGCGAGTGTAGTGCTCGCCGCCCCGGTATACCCTCGCGACCCGCACC
TGGACTGGAGCGAGTGGGAAGACCCACCAGCGTCTCACCTGAAAGACGAC
CCCGCCAAAAGCACCATGGACGGCGGCGGTCGCCAGCGTGTAGACGACGC
CGGCGTGCGGCGGCTGGTGACGACGTGTGCCCTTCGGTTAGAGCTATCAG
CTGATGTGTGCGGGAAGGGGGAGGTTCCCGACCCGCAAGATGCCTATCGG
TTGCACTACATGCACTCGGGGGGCCTCCCGTGCGGTTTCGAGGAGCGCTT
GGGGAAAGACGCTATGGAGGATATTGCCTCCAAGTATTCGTTCCACTTGA
TAGGCGACAGCACCAGCCGTAGACTCGGGGAGAGTTTTGTGTCGATTTTC
ACCGGGCGAGGATCGATCCACCCAATCGTCCAGAGGGACAGGGACTTTTC
TTCAGGGAACCTTGAGGTGCACTTCTACTGGGCACCGTTGTGCTCGGGGC
CCAAGAGCGTCGGCGCGATGCTAGCAACCGTCATGGAGGCGGTCCGCGCG
GCGAAGGACGGCAAGCGTGCGGTGATCATCACCGCATACGGCGTCCACGA
CGCGTTTGAGCTGCATCATGCCGCCAACGGGCATGGGAGCCCCTCGTACA
AGAGCGCCCTTCCTCAAGATGTCGTTGAGAAGGACGGCATGAGGGCCGCC
GCGCTTGGCGCTTGCCGGGACACTACCACTCAGCTGGTCAGAGCAGCGGC
AGCAACGGCGGTACCGGGGACCGAAGCGCCACCAGTGGAGGAAGAGCAAT
CGCCGGGGGATGGGCGGCGCCAACTGCCGAGCTTGTCAATGAAGGTTGAG
GTTGGACCACACGAGAAATCAGAGAAACAGGCTGCAGGCATCCCACCAAA
CAATGTCAGAGGTAGTTCGGTTGGGGCTGGAAATGAAGACACGCTGCTGG
GCGCATCAGCCCCGCCGGCCGCATCAGGCCCTTTGCAGCCGCTGCTCTTT
CTCATGCAGAACAACAGATATGCCCCCGGCTCTGTGGAGAATGCGTTTCA
GGAAGACCTGCATATAATACAGAGGCAGGTCGTTGGCGAGTGGGAAGCAA
GCGAAGGGTCTAAGGGCGATGGCGGTGAACGAGGATTGTTTCTAGTGGAC
GACAGCGTTGGCTTGTATGGGAACTTGTCCTGTTACCGCAATGCCAACCC
AATCCACTTCGATGAGCCCGTGAAGCTTATGGAAGGCAAGATGCTTTGGG
ACTTGCTGGTGCTCGTCGACAACGGGAGCGTGTTATCCTCCACCCTCTTT
TCGGCCGACGAAGACTACGGCCATAGTGCTGATGGCGAGCGTGGCGGTAG
TTTTTAA
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