mRNA_Ecto-sp6_S_contig98.18765.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18765.1
Unique NamemRNA_Ecto-sp6_S_contig98.18765.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18765.1 vs. uniprot
Match: D7G0V7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V7_ECTSI)

HSP 1 Score: 1083 bits (2800), Expect = 0.000e+0
Identity = 557/613 (90.86%), Postives = 568/613 (92.66%), Query Frame = 1 
Query:    1 KTCNFGTPGIFGGTAEYIEIEVRSRPGKTRYLLRESPRFHTQFSLQPLVDQPDFLTPSALGRCRQYDLRAGPRRRTHQQGVWVDVAASSHKKAGDYRSQQKAKCAFAHVAKDLRNPTAERSENEKLTDKRRQHRDSPTGDTTTASCCDPRRTIHRHSSFAGGEIRTLKDNSSARRRDANNNCN------PLQEVGTNSQPQAHYSMNPVPRGTFPLWESPNAILQGPNATIGWTGPNAAHLSSSNIKDKTIVSPSIEEHGFRGTLREDETWAKIAQTKSRRAGGGTDGVSTQTFSLASNPSEVKRTKHCLGVMFEAMDAAVSACSSKQRCRCFYSSCNGSAVTATDLGPMATTAGLSLGANGRSTLNLGPPFFASSPSSQGVPASLSTSHCWNPLAYENSLLGKLSSSIAHQSLPGNAGHQTSGPSGAPSDQCHIDDALDWMMSDLRRSSSPSSGDTGGDGARGLDVVTRMIAWEAPFFLPSAVGIEEPRPLKPAHQIGGRSGDSSRLDRSFGTNISTNIMASPDMDSKRSSTAHLTHTLRESRVVSFPKDGWQPAFRTAASPKKNEVVRSVAAINPSPSPSPFDWGLESSSFTPVSNNVLKYPTGGFPPSSW 1821
            K CNF TPGIFGGTAEY+EIEVRSRPGKT YL RESPRFHTQFSLQPLVDQPDFLTPSALG CRQYDLR GPR+RTHQQGVWVDVAASSH KAG+YRSQQKAKCAFAH AKDLRNPTAER+   K TDKRRQHR SPTGDTTTASCCDPR T+HRHSSFAGGEIRTLKDNSSA RRDANNNC       PLQEVGTNSQPQAH SMNPVPRGTF LWESPNAILQGPNATIGWTGPNAAHLSSS+IKDK IVSPSIEEHGFRGTLRED TWAKIAQTKSRRAGGGTDGVSTQTFSLASNPSEV+ TKHCLGVMFEA DA VS CSSKQRCRCFYSSCNGSAVTATDLGPMATTAGLSLGANGRS LNLGPPFFASSPSSQG+PASLSTSHCWNPLAYENS LG LSSSIAHQ LPGNAGHQTSGPS APSDQ HIDDALDWMMSDLRR SSPSSGDTGGDGARGLDVVTRMIAWEAPF LPS VG EEPRPLKPAHQ+GGRSGDSS L RS+ TNISTNIMASPDMDSKRSSTA LT TLRESRVVSFPKDGWQPAFRTAASPKKNEVVRS+AAINPSPSPSPFDWGLESSSFTPVSNNVLKYPTGGFPPSSW
Sbjct:    9 KICNFETPGIFGGTAEYVEIEVRSRPGKTGYL-RESPRFHTQFSLQPLVDQPDFLTPSALGHCRQYDLR-GPRQRTHQQGVWVDVAASSHGKAGNYRSQQKAKCAFAHGAKDLRNPTAERTTPPK-TDKRRQHRGSPTGDTTTASCCDPRCTVHRHSSFAGGEIRTLKDNSSAGRRDANNNCTGCNCRQPLQEVGTNSQPQAHDSMNPVPRGTFSLWESPNAILQGPNATIGWTGPNAAHLSSSSIKDKIIVSPSIEEHGFRGTLREDATWAKIAQTKSRRAGGGTDGVSTQTFSLASNPSEVECTKHCLGVMFEATDAVVSGCSSKQRCRCFYSSCNGSAVTATDLGPMATTAGLSLGANGRSPLNLGPPFFASSPSSQGIPASLSTSHCWNPLAYENSQLGLLSSSIAHQPLPGNAGHQTSGPSVAPSDQRHIDDALDWMMSDLRRVSSPSSGDTGGDGARGLDVVTRMIAWEAPFSLPSVVGTEEPRPLKPAHQLGGRSGDSSNLHRSYRTNISTNIMASPDMDSKRSSTARLTDTLRESRVVSFPKDGWQPAFRTAASPKKNEVVRSIAAINPSPSPSPFDWGLESSSFTPVSNNVLKYPTGGFPPSSW 618
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18765.1 vs. uniprot
Match: A0A6H5K205_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K205_9PHAE)

HSP 1 Score: 514 bits (1325), Expect = 1.570e-176
Identity = 296/452 (65.49%), Postives = 311/452 (68.81%), Query Frame = 1 
Query:  598 MNPVPRGTFPLWESPNAILQGPNATIGWTGPNAAHLSSSNIKDKTIVSPSIEEHGFRGTLREDETWAKIAQTKSRRAGGGTDGVSTQTFSLASNPSEVKRTKHCLGVMFEA-MDAAVSACSSKQRCRCFYSSCNGSAVTATDLGPMATTAGLSLGANGRSTLNLGPPFFASSPSSQGVPASLSTSHCWNPLAYENSLLGKLSSSIAHQSLPGNAGHQTSGPSGAPSDQCHIDDALDWMMSDLRRSSSPSSGDTGGDGARGLDVVTRMIAWEAPFFLPSAVGIEEPRPLKPAHQIGGRSGDSSRLDRSFGTNISTNIMASPDMDSKRSSTAHLTHTLRESRVVSFPKDGWQPAFRTAASPK-------------------------------------------KNEVVRSVAAINPSPSPSPFDWGLESSSFTPVSNNVLKYPTGGFPPSSW 1821
            MNPVPRGTF LWESPNAILQGPNATI WTGPNAAHLS SNIK+KTIVSPSI EHGFRGTLREDETWAKIA+TKSRRAGGGTDGVSTQT SL SNPSE +RTKHCLGVMFEA  DAAVSACSSKQRCRC+YSS +GSAVTATDLGPMATTA                          G PA L TS+CWNP AYENSLLGK +SS AH S+   AG QT GPSGAPSDQ HIDDALD +MSDLRR SS S  D G DGARGLDV TRM+  EA  F+ +AVGIEEPR                          STNI ASPDMDSKR STA LT  LRESRVVSFPKDGWQPA  TAASPK                                           KNEVVRSVAAI PSPSPSPFDWGLESSSF+P+SN VLK+ TGGFPPSSW
Sbjct:    1 MNPVPRGTFSLWESPNAILQGPNATIVWTGPNAAHLSRSNIKEKTIVSPSIAEHGFRGTLREDETWAKIARTKSRRAGGGTDGVSTQTSSLISNPSEAERTKHCLGVMFEAETDAAVSACSSKQRCRCYYSSSDGSAVTATDLGPMATTA--------------------------GTPALLPTSYCWNPFAYENSLLGKPASSTAHPSI---AGRQTPGPSGAPSDQHHIDDALDGIMSDLRRVSSTSDRDPGSDGARGLDVSTRMLPSEALLFVQTAVGIEEPR-------------------------SSTNITASPDMDSKRISTARLTDILRESRVVSFPKDGWQPAPPTAASPKALTVLLFGCLHILAKINSSSATSQTSHLIGFPQTAPSKPTIHKKNEVVRSVAAIIPSPSPSPFDWGLESSSFSPMSNIVLKHTTGGFPPSSW 398
[Close]
BLAST of mRNA_Ecto-sp6_S_contig98.18765.1 vs. uniprot
Match: D7G0T5_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T5_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.500e-19
Identity = 158/526 (30.04%), Postives = 212/526 (40.30%), Query Frame = 1 
Query:  304 AKCAFAHVAKDLRNPTAERSENEKLTDKRRQHRDSPTGDTTTASCCDPRRTIHRHSSFAGGEIRTLKDNSSARRRDANNNCNPLQEVGTNSQPQAHYSMNPVPRGTFPLWESPNAILQGPNATIGWTGPNAAHLSSSNIKDKTIVSPSIEEHGFRGTLREDETWAKIAQ--------TKSRRAGGGTDGVSTQTFSLASNPSEVKRTKHCLGVMFE--AMDAAVSACSSKQRCRCFYSSCNGS-----AVTATDLGPMATTAGLSLGANGRST----LNLGPPFFASSPSSQGVPASLSTSHCWNPLAYENS-LLGKLSSSIAHQSLPGNAGHQTSGPSGAPSDQCHIDDALDWMMSDLRRSSSPSSGDTGGDGARGLDVVTRMIAWEAPFFLPSAVGIEEPRPLKPAHQIGGRSGDSSRLDRSFGTNISTNIMASPDMDSKRSSTAHLTHTLRESRVVSFPKDGWQPAFRTAASPKKNEVVRSVAAINPSPSPSPFDWGLESSSFTPVSNNVLKYPTGGFPPSSW 1821
            A+CAFAH AK+LRN TA+ S   +    + +H  S      T SC +PR T+H   +F+ GE   L+  S            P+ + G+  +   H        G   +W      L+    + G   P                         RGTLRE+E+WAKIAQ            RA   T   +T T      PS     +HC     E  A  A  + CSS   CRC   S   +        + D  P   T GL+    G S+    LNLGPP  A   SS   PA+   +H WNP+ Y  S LLG  +SS+       NA  +   P   P  +  +DD L  MMS L    S S+ D   D +R +       +W  P  L   VG +EP  LK A Q GG SGDSSR D+S+ ++ S     +PD DS  + T         +   S P  G      +    K   V+ +   + PS S       +  +  T V N+VL  P G F  S W
Sbjct:   52 ARCAFAHGAKELRNATAKPSPPPETV--KAKHLQSSASRDATTSCSEPRCTVHP-GAFSDGESWLLEAKS------------PVTDQGSRDE-DGH--------GHRGVW------LETRGHSAGGNNPY-----------------------LRGTLRENESWAKIAQGTPIHGRENDCARASNVTAATTTTTA-----PSYFYGDEHCRNAFRETKAHAAGPAPCSSGVVCRCRTRSNRDTPRAVGCAASFDPEPTFATTGLAFSPRGCSSSPAPLNLGPPS-APQRSSTAAPAA---AHRWNPVTYNGSALLGSFASSLQE-----NAEARKPSPXXXPIPRHEMDDLLGRMMSVLSLDVSRSNDD---DASRDVGPSVPQ-SWYDPVLL-RPVGEKEPARLKTAQQQGGPSGDSSRPDQSYRSD-SLGKSVAPDRDSLGTFTT-------SADAFSIPSIG------SILEEKWPTVLPAGRGLKPSSS-------MAMAPSTRVHNDVLTNPGGSFSHSLW 484
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0V7_ECTSI0.000e+090.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K205_9PHAE1.570e-17665.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T5_ECTSI2.500e-1930.04C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:249802..255418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1824
Hectar predicted targeting categoryother localisation
Exons11
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_002140.1
Cds size1824
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18765.1prot_Ecto-sp6_S_contig98.18765.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 249802..255418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350603.723332-CDS-Ecto-sp6_S_contig98:249801..2500091682350603.723332-CDS-Ecto-sp6_S_contig98:249801..250009Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 249802..250009 +
1682350603.7319212-CDS-Ecto-sp6_S_contig98:250115..2502111682350603.7319212-CDS-Ecto-sp6_S_contig98:250115..250211Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 250116..250211 +
1682350603.7402387-CDS-Ecto-sp6_S_contig98:251357..2514121682350603.7402387-CDS-Ecto-sp6_S_contig98:251357..251412Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 251358..251412 +
1682350603.7509913-CDS-Ecto-sp6_S_contig98:251725..2517441682350603.7509913-CDS-Ecto-sp6_S_contig98:251725..251744Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 251726..251744 +
1682350603.7590795-CDS-Ecto-sp6_S_contig98:251836..2519071682350603.7590795-CDS-Ecto-sp6_S_contig98:251836..251907Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 251837..251907 +
1682350603.7670753-CDS-Ecto-sp6_S_contig98:252237..2523371682350603.7670753-CDS-Ecto-sp6_S_contig98:252237..252337Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 252238..252337 +
1682350603.7748754-CDS-Ecto-sp6_S_contig98:252750..2527971682350603.7748754-CDS-Ecto-sp6_S_contig98:252750..252797Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 252751..252797 +
1682350603.7831993-CDS-Ecto-sp6_S_contig98:253133..2535821682350603.7831993-CDS-Ecto-sp6_S_contig98:253133..253582Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 253134..253582 +
1682350603.791369-CDS-Ecto-sp6_S_contig98:253976..2544601682350603.791369-CDS-Ecto-sp6_S_contig98:253976..254460Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 253977..254460 +
1682350603.7995903-CDS-Ecto-sp6_S_contig98:254761..2549061682350603.7995903-CDS-Ecto-sp6_S_contig98:254761..254906Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 254762..254906 +
1682350603.8079143-CDS-Ecto-sp6_S_contig98:255268..2554181682350603.8079143-CDS-Ecto-sp6_S_contig98:255268..255418Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 255269..255418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18765.1

>prot_Ecto-sp6_S_contig98.18765.1 ID=prot_Ecto-sp6_S_contig98.18765.1|Name=mRNA_Ecto-sp6_S_contig98.18765.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=608bp
KTCNFGTPGIFGGTAEYIEIEVRSRPGKTRYLLRESPRFHTQFSLQPLVD
QPDFLTPSALGRCRQYDLRAGPRRRTHQQGVWVDVAASSHKKAGDYRSQQ
KAKCAFAHVAKDLRNPTAERSENEKLTDKRRQHRDSPTGDTTTASCCDPR
RTIHRHSSFAGGEIRTLKDNSSARRRDANNNCNPLQEVGTNSQPQAHYSM
NPVPRGTFPLWESPNAILQGPNATIGWTGPNAAHLSSSNIKDKTIVSPSI
EEHGFRGTLREDETWAKIAQTKSRRAGGGTDGVSTQTFSLASNPSEVKRT
KHCLGVMFEAMDAAVSACSSKQRCRCFYSSCNGSAVTATDLGPMATTAGL
SLGANGRSTLNLGPPFFASSPSSQGVPASLSTSHCWNPLAYENSLLGKLS
SSIAHQSLPGNAGHQTSGPSGAPSDQCHIDDALDWMMSDLRRSSSPSSGD
TGGDGARGLDVVTRMIAWEAPFFLPSAVGIEEPRPLKPAHQIGGRSGDSS
RLDRSFGTNISTNIMASPDMDSKRSSTAHLTHTLRESRVVSFPKDGWQPA
FRTAASPKKNEVVRSVAAINPSPSPSPFDWGLESSSFTPVSNNVLKYPTG
GFPPSSW*
back to top

mRNA from alignment at Ecto-sp6_S_contig98:249802..255418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18765.1 ID=mRNA_Ecto-sp6_S_contig98.18765.1|Name=mRNA_Ecto-sp6_S_contig98.18765.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5617bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:249802..255418+ (Ectocarpus species6 EcLAC_371)
AAAACATGCAATTTCGGAACTCCGGGCATCTTTGGGGGGACGGCGGAGTA
TATTGAGATCGAGGTGCGGTCTCGCCCAGGCAAGACGAGATACCTCCTCC
GCGAATCCCCTCGCTTTCACACGCAATTCTCTCTCCAGCCACTGGTAGAC
CAACCCGACTTCTTGACTCCTTCTGCTTTAGGTCGCTGCCGTCAATATGA
TCTCCGAGGTCAGTGCGCCTGTTCACCCTCGTTCGTGTCACATGATGTCA
CAGTTCTACATGCGGCAGCGCGTGTTCACGTTGTTCCTCGCCCTGTCCCC
ACGTATGAAAACAGCAGGCCCACGGCGGCGGACACATCAGCAGGGCGTCT
GGGTCGACGTCGCCGCCTCGTCGCATAAGAAGGCAGGGGATTATCGAAGC
CAACAGAAAGGTGGCCCATGTCGTACGTGAATCTAGGGAGGAAATCGTTT
CGCAGAGAGGGAGACGGAGAGGGAGTCAGATTCCAGATGATGAAGGTTTA
CAGCAGTAGTGCCGCCGCACTCCTTTTATTGCGGCGGATTTTGCGCTCGG
ATGAACCCTTACGGCACACCTCACTCTGTCTTCATCCTCGAATGACGATA
CATGCGGAAGTAGGCTCCTCATCTCTTTAGATCTTCCAGCATCAACTTGT
CTTGGCTGTTCGCTCCTTGGGACGTATCCTGATGGCGTGAAACTACTCTC
TTTTAATGTAGGTCGCAAGGGAAATATGTGACTTGCTGACCTCTTGGAGG
GGGAAATTTGAATTTGAAAACATTCAGCCGTTATGTTACAACCTGTCAGA
TCACATGTGCGGCGTGATCGAAACTGAATGGCTGTCGGCGCATGCACTCT
TCATGTCATTATAATCAACCGAACCTGAGACCACTGAAGGCCTCTCGAAC
GCTAGACAACGTCTCTTTCCCTCGTGTAGACTCACACTGGTAAGCAGTGC
ACATGCCTCTCACCATCGTACTCTTTATCTTCTGTTCTCGCCCACTTCCG
TACAGACCGAAATCTGCAAACACTGGCTCCAGGGAAAATGCCCCTCCGGT
GGTGAGTACACCCCCTAAAGTTCACTATTTATTGTATAAAGACGTCGTCG
CACGGGCTGCACCCTTTCGAGGTTGTGAAACTCGTGAGGCAATATGTTGA
AGGAGTCATCGAAACTTTGAACGTTGAAGTTGTTTTTCTTGAAGCACATG
TCTCGCACTGTGTGTGTTGGATTTAGAGTACAGTACGTGCTGCAGTATGC
CACACCTGACATGTTGTCTGTAGTCTGGGATCACAATTTATGCACGCTTT
GGACGGGGAGACGCTTGAGTGCAAGTTTGAGGTCGCAAAGTTGTGTCAGC
AGCAGGGTGTGAGACGTTCCTGAGAACAGGAAGGTATGCCTTTCGGGTTG
AAACTACATGATATGTTGCGTTTTCCTGTTGCTTCGGGTAAATTTCTCAC
TCTTGTGTTTCATATTTTCACTCTTGAGCTGCGTGAGGGCATGAATACTC
ATGCTTGTTCCGTCTGTGCCATGGTGTTATCATGCACTGGGATGCCGCTC
GATCAGCCAAGTGCGCGTTCGCCCATGTTGCCAAGGATTTGAGGAACCCT
ACCGCCGAACGGTAAGGTTAGTCCCATAGGCGACATCTCTGTTCAGCTGT
ATCAGAAGGTTTATTGTGTCAGTAACAGTATCCACTGAATCCGGAGAAAA
ATCGCTTGTGTGTACTTGTAGTAAGAAATGGCGCGCGTGCTTGATTCCAA
ACAAGGGGAAGCGCAGCGTATCTTGATGACGATACCGCTCAGTACTCGTG
GAAAAATATTGTTGAGAGTATTTTCGAGCATGCGAGTAAACGCCGAGTGT
GAATTGAATCAAGCAACTACGGACACAGGCCAGTATGTGTTTCGGCATTC
ACATACTTAACTTCGGTACGGTAGTTCGGAGAACGAGAAGCTCGTTTGAA
CACGTGTCCTTTCACCTCCTGATTGACATTGCTACGGGCTCCGCCTTGTC
AACTGCGGGATGCACGTTGCACTCCCCCCCCCAAGACGGACAAGAGGAGG
CAGCACCGAGACTCGCCGACTGGTGACACAACCACTGCGTCCTGCTGCGA
CCCAAGGTAAAACGTTGAATCCTAGTGCATACCACGGGCATCATCATTGT
CCAACCTCTCTTCACATCAGTAAACCCCAAGGACATCCGGAGAAAACCGG
CTACAGAGTATTTTCATCTTTAAGACGACATGCCGTCTCCTTCCAACCCA
GGCGGACGACATCATCCTCCGCTGGCATGTGTTCACGCGTACAACCGAAA
CACAACGCACCTTCCCTGCCCTGAGTCCTTCCCCCAATGCACATTTTCAC
TATGTAGACGATCTCAACAATATAATCTACATTTCCTTTCCGTTGCCCCG
GTTCCCTATGATTCGAACGTCGTCGACTTGACACAGGCGCACTATTCACC
GCCATTCATCGTTCGCCGGGGGCGAGATCCGGACGCTGAAGGACAACTCT
TCCGCGCGCCGCCGTGACGCCAACAACAACTGCAACGTGGGTCACAGGCA
TTTATCTTAGACGACACGGTTTGATGGTGTTGTACGAATCTCGAAGGGGG
AAGTCTGCGCCATTCCGGATGAGGCGAAATCTTACTCTTTTCGCCATTGT
CTTGGCTACCCCTCGATGGACTACTGTACTTCCGAGCACGCCCACGTGTC
ACTATTGTCTGTTCATACAGAGTTGCACTTCCGAACATTTCAGACTTGCA
GATTGTGAGTCCTAGCACCATATTCATCGGACATGCAGATATATGCCCAC
GAGACTACGAAGTTCGACGTATAAAAAACGTTTTGGATATAGCTCAAACC
AGAGGAGGCTCAGATTATCCCTACCTTGCGACACCACGCTCTCACTGCTT
TTGATACGCCTTGGGAACCTCAATCTATGTCGGGTGCAACTGCCGTCAGC
CGCTGCAAGAAGTCGGTACCAACAGCCAGCCTCAGGCTCACTACAGGTAC
GATCGTTCACGGCTTTCGCAGTTATCCTTGCGTCCCACCACACCCTGAGA
GCTCATAAGTGGTTTGCTGTGCAACAGATACGTTCCAGCACCCTAGGCGG
AACATTGCACGTTGTTGTGCTATTGCAGTTCTACGCTGATTGGGCATTGA
GCGAGCGAGTGCGCCCGGGAGACGAGTCGCAACACATACTCAGTAGAAGA
AGGAGGGGTGAAGAACAAGCTTGGCAAAAATCCAGCAAACAATATTCGTT
GTTCAAGCACAACATTCGTTGTTCATGCATGATCACCAGTCTGAGCTCTG
CCCACCTTGCTGCTGTCGGTTCGTGTCGACAGCATGAATCCCGTACCCAG
GGGCACCTTCCCCCTCTGGGAGTCTCCTAACGCCATCCTACAGGGCCCGA
ACGCTACCATCGGTTGGACCGGCCCCAACGCGGCCCACCTCAGCAGCAGC
AACATCAAGGACAAGACCATCGTTTCCCCTAGTATCGAAGAACACGGCTT
CCGAGGTACGCTCCGCGAAGATGAGACATGGGCCAAGATCGCCCAAACGA
AATCTCGCCGTGCCGGCGGGGGAACCGACGGTGTCTCCACCCAGACCTTC
AGCTTGGCTTCGAATCCGTCCGAGGTGAAGCGCACCAAACACTGCCTGGG
TGTGATGTTCGAGGCGATGGATGCCGCGGTTTCCGCGTGCTCTTCCAAGC
AGCGGTGCCGCTGCTTCTACTCGTCTTGCAATGGTAGCGCGGTGACTGCC
ACCGACCTCGGACCAATGGCTACAACGGCTGGTGAGAGGTCGGGGACCTT
GTATCTCGAAGGCTTTAGGCATTACGATTACGGAAAACGTTCAGTTCTGA
GGAGCATTGTTCGTGTTGTTGTATGTTGAATGCATGGTTAGTGTAAATTG
ACCTATTCGATCACTGATCCTGTTTGATAGGATTTTTCTGAAGGTTTTGA
AACAACAAACGCGCATGCAACATCGATCGGCATTGGAGCTTTTTTGAACC
AACCAGGAATTAACCTATTTCGCAATAGGTCTGGAATGAAGGCCGCATTA
TTTCCTCTTCAAACGTCAAACTAGGAGGAACAAAATCACACTGTCATTCT
TGCCTTCCTCTCCCCCATATCCAACCTCTCACCGGCAGTCGCGCCCCGCC
CGACCTCGATCCATCCATTTGATAGGCCTTTCCCTCGGCGCCAATGGACG
CAGCACCCTCAACCTTGGACCCCCCTTCTTCGCATCCTCACCGTCGAGCC
AAGGCGTACCCGCTTCACTGTCTACATCTCACTGCTGGAACCCTCTCGCT
TACGAAAATTCCCTGCTTGGAAAGCTGTCTTCTTCGATTGCTCACCAATC
GCTTCCTGGGAATGCGGGACACCAAACGTCTGGCCCTTCCGGGGCGCCGA
GCGATCAATGTCACATCGATGACGCTCTTGATTGGATGATGTCGGATTTG
CGTCGATCCTCTTCTCCCTCCAGCGGTGATACAGGCGGTGATGGTGCTCG
AGGCCTGGACGTTGTGACGAGGATGATCGCGTGGGAGGCTCCCTTCTTTC
TGCCTTCTGCGGTGGGCATTGAGGAACCTAGGCCGTTGAAGCCGGCACAC
CAGATAGGAGGTCGTTCGGGAGACTCTTCTCGCCTCGACCGTTCATTCGG
CACCAACATGTGGGTCGATGCACATGAACCTCATTGGTTATGTGGGAGTG
CGTTGTGCAGTGTATCGAAGGGTCAACCAACGAGTATCGCGATTGCTCAT
TTGTAAGGTTCAGTTTGAAGCATAGCATTTTCCGGAAGGTATCCATAGCG
AGGCTTGTTGTCGTTGACCTCGATGAACAAGGAGCAGGTCTTGTTCTCGA
TGATGTCGTATTTAGGGAAAAATGCACTGCCGGTGATTTCCTCGCTGTCA
TGGCGGCCGATCCCCCGTACTCCGCCGTGTTTCTCTTGTCAATGTGCTTT
GTATCATCAGCTCCACCAACATTATGGCTTCGCCGGACATGGACAGCAAG
AGATCATCTACTGCGCACCTGACACACACCCTTCGTGAATCACGCGTCGT
GTCGTTCCCAAAGGATGGGTGGCAGCCTGCTTTTCGCACTGCAGCGTCTC
CAAAGGTACGGATAGTTTTTTTTAGCGTGCATCCCTTTATCACATAAGTG
TAGGGAAAACCTCAGCCCGCGGACAGTTGTTGGACATACAGCCCAGGGTC
CGTGAGTTAAGGGTGCAGCGGTGTAAATCGTTTGGAAAGGCGATAATACA
GTATTGGGATCAGCAGTCCTGTTTTTCTTGCGTCTTCTTCAGAAAAATGT
GCGCAGACCCGACCATCGATCGAACTGTCTGTAGGCCTTGACTGTGCTAT
TGTTTGGGTGCCTGTAAATTCTTGAAAAAATAAATTCGTCCTCTGCCACC
TCTCAGCGCTAACTTCCGATCTGATTGGCTTTCCGCAAACTTCGCCCTCC
AAACTAACAATACATAGAAGAACGAGGTGGTTCGCTCCGTCGCCGCGATC
AACCCTTCTCCTTCTCCGTCGCCCTTCGACTGGGGGTTGGAGTCCTCGTC
CTTTACCCCGGTGTCAAACAACGTCCTGAAGTACCCGACAGGCGGGTTCC
CGCCCTCCTCCTGGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:249802..255418+

>mRNA_Ecto-sp6_S_contig98.18765.1 ID=mRNA_Ecto-sp6_S_contig98.18765.1|Name=mRNA_Ecto-sp6_S_contig98.18765.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1824bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:249802..255418+ (Ectocarpus species6 EcLAC_371)
AAAACATGCAATTTCGGAACTCCGGGCATCTTTGGGGGGACGGCGGAGTA
TATTGAGATCGAGGTGCGGTCTCGCCCAGGCAAGACGAGATACCTCCTCC
GCGAATCCCCTCGCTTTCACACGCAATTCTCTCTCCAGCCACTGGTAGAC
CAACCCGACTTCTTGACTCCTTCTGCTTTAGGTCGCTGCCGTCAATATGA
TCTCCGAGCAGGCCCACGGCGGCGGACACATCAGCAGGGCGTCTGGGTCG
ACGTCGCCGCCTCGTCGCATAAGAAGGCAGGGGATTATCGAAGCCAACAG
AAAGCCAAGTGCGCGTTCGCCCATGTTGCCAAGGATTTGAGGAACCCTAC
CGCCGAACGTTCGGAGAACGAGAAGCTCACGGACAAGAGGAGGCAGCACC
GAGACTCGCCGACTGGTGACACAACCACTGCGTCCTGCTGCGACCCAAGG
CGCACTATTCACCGCCATTCATCGTTCGCCGGGGGCGAGATCCGGACGCT
GAAGGACAACTCTTCCGCGCGCCGCCGTGACGCCAACAACAACTGCAACC
CGCTGCAAGAAGTCGGTACCAACAGCCAGCCTCAGGCTCACTACAGCATG
AATCCCGTACCCAGGGGCACCTTCCCCCTCTGGGAGTCTCCTAACGCCAT
CCTACAGGGCCCGAACGCTACCATCGGTTGGACCGGCCCCAACGCGGCCC
ACCTCAGCAGCAGCAACATCAAGGACAAGACCATCGTTTCCCCTAGTATC
GAAGAACACGGCTTCCGAGGTACGCTCCGCGAAGATGAGACATGGGCCAA
GATCGCCCAAACGAAATCTCGCCGTGCCGGCGGGGGAACCGACGGTGTCT
CCACCCAGACCTTCAGCTTGGCTTCGAATCCGTCCGAGGTGAAGCGCACC
AAACACTGCCTGGGTGTGATGTTCGAGGCGATGGATGCCGCGGTTTCCGC
GTGCTCTTCCAAGCAGCGGTGCCGCTGCTTCTACTCGTCTTGCAATGGTA
GCGCGGTGACTGCCACCGACCTCGGACCAATGGCTACAACGGCTGGCCTT
TCCCTCGGCGCCAATGGACGCAGCACCCTCAACCTTGGACCCCCCTTCTT
CGCATCCTCACCGTCGAGCCAAGGCGTACCCGCTTCACTGTCTACATCTC
ACTGCTGGAACCCTCTCGCTTACGAAAATTCCCTGCTTGGAAAGCTGTCT
TCTTCGATTGCTCACCAATCGCTTCCTGGGAATGCGGGACACCAAACGTC
TGGCCCTTCCGGGGCGCCGAGCGATCAATGTCACATCGATGACGCTCTTG
ATTGGATGATGTCGGATTTGCGTCGATCCTCTTCTCCCTCCAGCGGTGAT
ACAGGCGGTGATGGTGCTCGAGGCCTGGACGTTGTGACGAGGATGATCGC
GTGGGAGGCTCCCTTCTTTCTGCCTTCTGCGGTGGGCATTGAGGAACCTA
GGCCGTTGAAGCCGGCACACCAGATAGGAGGTCGTTCGGGAGACTCTTCT
CGCCTCGACCGTTCATTCGGCACCAACATCTCCACCAACATTATGGCTTC
GCCGGACATGGACAGCAAGAGATCATCTACTGCGCACCTGACACACACCC
TTCGTGAATCACGCGTCGTGTCGTTCCCAAAGGATGGGTGGCAGCCTGCT
TTTCGCACTGCAGCGTCTCCAAAGAAGAACGAGGTGGTTCGCTCCGTCGC
CGCGATCAACCCTTCTCCTTCTCCGTCGCCCTTCGACTGGGGGTTGGAGT
CCTCGTCCTTTACCCCGGTGTCAAACAACGTCCTGAAGTACCCGACAGGC
GGGTTCCCGCCCTCCTCCTGGTAG
back to top