mRNA_Ecto-sp6_S_contig98.18759.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18759.1
Unique NamemRNA_Ecto-sp6_S_contig98.18759.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18759.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 4.650e-51
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 3 
Query:  780 RRGKVYQLPWRTGDESTTVAVRAGNAGVYVATCVNRQRRTSSCSRTECQGATAGFVSQQQTVGSHGGVASAVGGLCQHAALALEHMAANTMKRATSVLGGVS 1085
            RRGKVYQLPWRTGDESTTVAVRAGNAGVYVATCVNRQR+TSSCSRTECQGATAGFVSQQ+TVGSHGGVASAVGGLCQHAALALEHMAA TMKRATSVLGGV+
Sbjct:   44 RRGKVYQLPWRTGDESTTVAVRAGNAGVYVATCVNRQRKTSSCSRTECQGATAGFVSQQRTVGSHGGVASAVGGLCQHAALALEHMAAKTMKRATSVLGGVA 145
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BLAST of mRNA_Ecto-sp6_S_contig98.18759.1 vs. uniprot
Match: A0A6H5K0Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q8_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 8.040e-42
Identity = 79/90 (87.78%), Postives = 83/90 (92.22%), Query Frame = -1 
Query:  143 VSSPSPRALAPPGALPMVHGPGLHGRLRRGLPAAETQNVHRTDHVLLPERQVARGRQGLGVEESVPVDAVPLAGRFAMMVLEALELVQLG 412
            VSSPSPRAL+ PGALP+VHGPGLHGR+RR + AA TQNVHRTDHVLLPE QVARGRQGLG EESVPVDAVPLAGRFAMMVLEAL LVQLG
Sbjct:    2 VSSPSPRALSAPGALPIVHGPGLHGRVRRAV-AAATQNVHRTDHVLLPEGQVARGRQGLGEEESVPVDAVPLAGRFAMMVLEALVLVQLG 90
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BLAST of mRNA_Ecto-sp6_S_contig98.18759.1 vs. uniprot
Match: D8LSV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV9_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.330e-28
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = 3 
Query:  768 GRRRRRGKVYQLPWRTGDESTTVAVRAGNAGVYVATCVNRQRRTSSCSRTECQGATAGFVSQQQTVGSHGGVASAVGGLCQHAALALEHMAANTMKRATSVLG 1076
            G  ++R +V++LP   GD+STTVAVR GNA  +V T VN +R+TSSCSRT+CQG  AG V+QQQT GSHGGVASA+GGLC+HA  ALEHM   T+K A  V G
Sbjct:   91 GEAKQRQRVFKLPRGNGDQSTTVAVRLGNADNWVITSVNPERQTSSCSRTQCQGLRAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKG 193
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BLAST of mRNA_Ecto-sp6_S_contig98.18759.1 vs. uniprot
Match: A0A6H5KX47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX47_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.360e-28
Identity = 62/74 (83.78%), Postives = 63/74 (85.14%), Query Frame = -1 
Query:  143 MVHGPGLHGRLRRGLPAAETQNVHRTDHVLLPERQVARGRQGLGVEESVPVDAVPLAGRFAMMVLEALELVQLG 364
            MVHGPGLHGR+ R   A  TQNVHRTDHVLLPERQVARGRQGLG EESV V AV LAGRFAMMVLEAL LVQLG
Sbjct:    1 MVHGPGLHGRVHRAA-AVATQNVHRTDHVLLPERQVARGRQGLGEEESVTVGAVTLAGRFAMMVLEALLLVQLG 73
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BLAST of mRNA_Ecto-sp6_S_contig98.18759.1 vs. uniprot
Match: D7FR12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR12_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 5.840e-28
Identity = 64/103 (62.14%), Postives = 77/103 (74.76%), Query Frame = 3 
Query:  768 GRRRRRGKVYQLPWRTGDESTTVAVRAGNAGVYVATCVNRQRRTSSCSRTECQGATAGFVSQQQTVGSHGGVASAVGGLCQHAALALEHMAANTMKRATSVLG 1076
            G  ++R  V++LP   GD+STTVAVR GNA  +V T VN +R+TSSCSRT+CQG  AG V+QQQT GSHGGVASA+GGLC+HA  ALEHM   T+K A  V G
Sbjct:   55 GEAKQRQIVFKLPRGNGDQSTTVAVRLGNADNWVITSVNPERQTSSCSRTQCQGLRAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKG 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPP3_9PHAE4.650e-5196.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0Q8_9PHAE8.040e-4287.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSV9_ECTSI1.330e-2862.14Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KX47_9PHAE1.360e-2883.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR12_ECTSI5.840e-2862.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:215555..217455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1087
Hectar predicted targeting categoryother localisation
Exons3
Cds size882
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350603.2495549-UTR-Ecto-sp6_S_contig98:215554..2157131682350603.2495549-UTR-Ecto-sp6_S_contig98:215554..215713Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig98 215555..215713 -
1682350603.2681208-UTR-Ecto-sp6_S_contig98:215980..2160261682350603.2681208-UTR-Ecto-sp6_S_contig98:215980..216026Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig98 215981..216026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350603.2766657-CDS-Ecto-sp6_S_contig98:216026..2162791682350603.2766657-CDS-Ecto-sp6_S_contig98:216026..216279Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 216027..216279 -
1682350603.2847927-CDS-Ecto-sp6_S_contig98:216826..2174551682350603.2847927-CDS-Ecto-sp6_S_contig98:216826..217455Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 216827..217455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18759.1prot_Ecto-sp6_S_contig98.18759.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 216027..217455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18759.1

>prot_Ecto-sp6_S_contig98.18759.1 ID=prot_Ecto-sp6_S_contig98.18759.1|Name=mRNA_Ecto-sp6_S_contig98.18759.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=294bp
MSERPPRPPAGRAGLLPGALSVAAATGTTAGAAAAASGASRPHQTTPTPV
EPAPTPPVPSLRTVPPTVQRPLVRILPRPGPAGRGLPASPAAGRGRSDAR
SASQRQVARGAADRGGQGRAPSAGHPEEPGHVETGKRPYNNFNQQCAMCN
LPEARSDKRFKLCQDNRNCGRWVHKSRDRACFSVFNLSAPVDARCCKHHK
GLKSACGCNSCNASRRKLVQAGSRGGVGGRGRVGRGSGQGRGHGGRRGKD
GARHWWAAAAAAGKCTSCRGAPATRARQLRFEPGMLEFMLQPV*
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mRNA from alignment at Ecto-sp6_S_contig98:215555..217455-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18759.1 ID=mRNA_Ecto-sp6_S_contig98.18759.1|Name=mRNA_Ecto-sp6_S_contig98.18759.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1901bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:215555..217455- (Ectocarpus species6 EcLAC_371)
ATGAGCGAGCGACCACCGCGTCCACCTGCGGGTCGTGCAGGTCTCCTTCC
CGGAGCCCTGTCCGTGGCCGCAGCAACCGGAACCACAGCTGGTGCTGCAG
CAGCAGCATCCGGAGCATCACGGCCTCATCAAACAACGCCTACCCCAGTT
GAACCAGCTCCAACGCCTCCAGTACCATCATTGCGAACCGTCCCGCCAAC
GGTACAGCGTCCACTGGTACGGATTCTTCCACGCCCAGGCCCTGCCGGCC
GCGGGCTACCTGCCTCTCCGGCAGCAGGACGTGGTCGGTCCGATGCACGT
TCTGCGTCTCAGCGGCAGGTAGCCCGCGGCGCAGCCGACCGTGGAGGCCA
GGGCCGTGCACCATCGGCAGGGCACCCGGAGGAGCCAGGGCACGTGGAGA
CGGGGAAGAGACCGTACAACAACTTCAACCAGCAGTGTGCGATGTGCAAC
TTACCGGAGGCGAGGTCAGACAAAAGATTCAAGCTGTGCCAGGATAACCG
TAACTGCGGAAGATGGGTCCACAAATCGAGAGACCGAGCGTGCTTCTCCG
TCTTCAATCTCTCCGCACCCGTAGACGCAAGGTGCTGCAAGCACCACAAG
GGCTTGAAGAGCGCATGTGGCTGTAACAGGTGATTAATATCCTCAGAGAC
ACTGCTGTTGGTGTAACCGATTTGAACAGAGGACAATTGATCAGGATTAA
ACTCGAAACGGCCGGCACCAACGGTGCTTTTCATTAAAGCAGAGCTCCCA
GAGCTCCCAGAGCTCTGCCGCGGCTCTGTGCGGCGCTCTGTTTGTTGTTA
TATGCCAAGCGTATGCTCGAGAGAGTCGCCAGATAGGGGTTAAAAAATCG
CCTGTGTACATGAACTTGGTATGTACACGTGTGTATGCGCACATCGTTCG
TGGTGATGTTTTGTGTTAAAGTGTCTTGGCGCAATTCTGGGTGACATCAA
CCATTTCGGCGGAACCTTCTCGCGTATGTATACGGCGATTATGGAAGCAA
GCAAGGCCCTATTTTGCTATGTATTCTTCAGAAAAGAAGACAGAAAACTC
TGCTCGTCGATTTGCTTTGAATTTGTGAGAGCAGACCGTACCGTTGCGTG
TACCTCCGCTTTGTCCTAACCCTCGTCCTCACCGTCGCCACGCCTTTGTT
TTTTTTTCCCCGCCGGACGGGTCCAGCTGTAACGCCAGCAGGCGCAAGCT
TGTCCAGGCAGGATCTCGAGGCGGGGTGGGGGGGCGTGGACGCGTGGGTC
GAGGGAGTGGGCAAGGACGAGGACACGGAGGTCGGAGGGGCAAGGACGGG
GCGCGGCATTGGTGGGCCGCCGCCGCCGCCGCGGGAAAGTGTACCAGTTG
CCGTGGCGCACCGGCGACGAGAGCACGACAGTTGCGGTTCGAGCCGGGAA
TGCTGGAGTTTATGTTGCAACCTGTGTGAACCGGCAACGCAGAACTTCCA
GCTGCTCGAGGACAGAATGTCAAGGGTGAGACAAAGGATCGTGCTGTTCG
ACCCTGGAACCTTGTTTCCTGCCCCGGCGTGTTTCGCGGCTAATCGTTGA
AATAATGCGTTGGGCTTGTAGAGACACGTGGTGCCATCTTCAGAACGCAG
ACTTTGTGTGGCCTGGTATGAAGTATGGATTCTAAACTACCGTCGGCATC
CAACTCATTTTCGTCAAAGGCGGATCAATATTATTGCCGACAGCGCCTTT
CACCACCTGTGCATGCCACGTCGGTTCTCGTTTACTTCGAAGGGCAACGG
CGGGTTTCGTATCACAACAACAAACGGTGGGGAGTCACGGCGGAGTGGCC
AGCGCTGTCGGAGGCCTGTGCCAGCACGCCGCCTTGGCACTAGAGCATAT
GGCGGCGAATACGATGAAGAGAGCAACCAGCGTGCTAGGTGGGGTTTCAA
G
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:215555..217455-

>mRNA_Ecto-sp6_S_contig98.18759.1 ID=mRNA_Ecto-sp6_S_contig98.18759.1|Name=mRNA_Ecto-sp6_S_contig98.18759.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:215555..217455- (Ectocarpus species6 EcLAC_371)
ATGAGCGAGCGACCACCGCGTCCACCTGCGGGTCGTGCAGGTCTCCTTCC
CGGAGCCCTGTCCGTGGCCGCAGCAACCGGAACCACAGCTGGTGCTGCAG
CAGCAGCATCCGGAGCATCACGGCCTCATCAAACAACGCCTACCCCAGTT
GAACCAGCTCCAACGCCTCCAGTACCATCATTGCGAACCGTCCCGCCAAC
GGTACAGCGTCCACTGGTACGGATTCTTCCACGCCCAGGCCCTGCCGGCC
GCGGGCTACCTGCCTCTCCGGCAGCAGGACGTGGTCGGTCCGATGCACGT
TCTGCGTCTCAGCGGCAGGTAGCCCGCGGCGCAGCCGACCGTGGAGGCCA
GGGCCGTGCACCATCGGCAGGGCACCCGGAGGAGCCAGGGCACGTGGAGA
CGGGGAAGAGACCGTACAACAACTTCAACCAGCAGTGTGCGATGTGCAAC
TTACCGGAGGCGAGGTCAGACAAAAGATTCAAGCTGTGCCAGGATAACCG
TAACTGCGGAAGATGGGTCCACAAATCGAGAGACCGAGCGTGCTTCTCCG
TCTTCAATCTCTCCGCACCCGTAGACGCAAGGTGCTGCAAGCACCACAAG
GGCTTGAAGAGCGCATGTGGCTGTAACAGCTGTAACGCCAGCAGGCGCAA
GCTTGTCCAGGCAGGATCTCGAGGCGGGGTGGGGGGGCGTGGACGCGTGG
GTCGAGGGAGTGGGCAAGGACGAGGACACGGAGGTCGGAGGGGCAAGGAC
GGGGCGCGGCATTGGTGGGCCGCCGCCGCCGCCGCGGGAAAGTGTACCAG
TTGCCGTGGCGCACCGGCGACGAGAGCACGACAGTTGCGGTTCGAGCCGG
GAATGCTGGAGTTTATGTTGCAACCTGTGTGA
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