mRNA_Ecto-sp6_S_contig98.18751.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18751.1
Unique NamemRNA_Ecto-sp6_S_contig98.18751.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig98.18751.1 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 2.920e-56
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = -2
Query:   42 NQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSLDSLAPGCAA 314
             QGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSLDSLAPGCAA
Sbjct:  411 TQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSLDSLAPGCAA 501          
BLAST of mRNA_Ecto-sp6_S_contig98.18751.1 vs. uniprot
Match: A0A7S3Y620_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y620_HETAK)

HSP 1 Score: 114 bits (284), Expect = 2.630e-28
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = -2
Query:   72 NQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKS 314
            +QGW+ FFFEFEA+W+  +AAG +  SSCL+G+ G LYDIT+F+  HPGSPETL+ENAG D ++FF +VGHS  AR LM++
Sbjct:  106 SQGWKRFFFEFEASWINMVAAGHDTLSSCLIGIEGGLYDITNFIDLHPGSPETLLENAGRDVTQFFNEVGHSATARRLMRN 186          
BLAST of mRNA_Ecto-sp6_S_contig98.18751.1 vs. uniprot
Match: A0A7S3Y614_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y614_HETAK)

HSP 1 Score: 114 bits (284), Expect = 6.320e-28
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = -2
Query:   72 NQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKS 314
            +QGW+ FFFEFEA+W+  +AAG +  SSCL+G+ G LYDIT+F+  HPGSPETL+ENAG D ++FF +VGHS  AR LM++
Sbjct:  165 SQGWKRFFFEFEASWINMVAAGHDTLSSCLIGIEGGLYDITNFIDLHPGSPETLLENAGRDVTQFFNEVGHSATARRLMRN 245          
BLAST of mRNA_Ecto-sp6_S_contig98.18751.1 vs. uniprot
Match: A0A7S2FKK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKK9_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.050e-27
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = -2
Query:   69 WREFFFEFEATWLEWLAAGQNFES---SCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSL 305
            WR FFFE+E +WLEW  AGQN E+    CL+GV+G +YD++ F+  HPG+PET+++NAG D +EFFEDVGHS  AR  MKSL
Sbjct:  291 WRRFFFEYEESWLEWSCAGQNVENVNQGCLIGVYGTVYDVSFFLDEHPGTPETILDNAGGDTTEFFEDVGHSTSARRRMKSL 372          
BLAST of mRNA_Ecto-sp6_S_contig98.18751.1 vs. uniprot
Match: A0A7S1ZBN1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBN1_TRICV)

HSP 1 Score: 99.8 bits (247), Expect = 2.900e-23
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = -2
Query:   42 REFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGL-MKSLDSLAPGCAA 302
            ++F+F F  TWL +L AGQN    CLVG+HG ++DITDF+  HPGSPETL   +G  A+ FFED+GHS+ AR + MK    +  GCAA
Sbjct:   77 KDFYFSFGETWLNYLLAGQNTRDRCLVGLHGHVFDITDFVESHPGSPETLYIQSGRSATSFFEDLGHSVGARKMAMKLCLVIDQGCAA 164          
BLAST of mRNA_Ecto-sp6_S_contig98.18751.1 vs. uniprot
Match: W7TKW6_9STRA (Cytochrome b5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKW6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.000e-22
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = -2
Query:   54 GWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSLDSLAP 308
            GWR F+  FE  W  WL AG+N E SC VG+ G +YD+T F+  HPGS ET++ NAG DA+ FF+DVGHS  AR +M     + P
Sbjct:  386 GWRHFYSVFELEWAAWLCAGRNREDSCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGHSAQARAMMADFCIVPP 470          
BLAST of mRNA_Ecto-sp6_S_contig98.18751.1 vs. uniprot
Match: A0A7S2SV73_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV73_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.020e-21
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = -2
Query:   54 WREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDARGLMKSLDSLAP 305
            WR FF+EF+  W++W   G N  + CLV +HG +YD+T F   HPGS ETL++NAG DA+  FE VGHS  AR  M  L  + P
Sbjct:  317 WRRFFYEFDEAWMDWALVGMNTPARCLVALHGTIYDLTQFKQEHPGSVETLLDNAGGDATPMFEGVGHSRVARRQMAQLVRIEP 400          
BLAST of mRNA_Ecto-sp6_S_contig98.18751.1 vs. uniprot
Match: K8YSQ2_NANGC (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSQ2_NANGC)

HSP 1 Score: 90.1 bits (222), Expect = 4.270e-21
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = -2
Query:  102 WREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGH 305
            WR F+  FE  W  WL AG+N E SC VG+ G +YD+T F+  HPGS ET++ NAG DA+ FF+DVGH
Sbjct:   40 WRHFYSVFELEWAAWLCAGRNREESCWVGLEGGVYDLTAFLEIHPGSKETILVNAGGDATAFFQDVGH 107          
BLAST of mRNA_Ecto-sp6_S_contig98.18751.1 vs. uniprot
Match: A0A7S2K3U1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3U1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.610e-20
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = -2
Query:   87 REFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDAR 302
            +E +F F   WL+W  AG+N E  CL G+HG ++++T F+  HPG+PETLM  AG DA+++FED+GHS+ AR
Sbjct:  339 KELYFRFGEAWLDWAIAGKNSEEQCLAGLHGSVFNLTSFLESHPGTPETLMMQAGRDATKYFEDIGHSMAAR 410          
BLAST of mRNA_Ecto-sp6_S_contig98.18751.1 vs. uniprot
Match: A0A7S0C0K9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0K9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.690e-20
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = -2
Query:   87 QNQGWREFFFEFEATWLEWLAAGQNFESSCLVGVHGRLYDITDFMHRHPGSPETLMENAGADASEFFEDVGHSLDAR 317
            Q+   ++ +F F   W+++  AGQN    C VG+HG +YDI+DF+  HPGSPETL+ +AG DAS++FE++GHSL AR
Sbjct:  345 QSLSMKDVYFMFSDCWVDYCIAGQNTMERCFVGLHGNVYDISDFIEHHPGSPETLLMHAGRDASKYFEELGHSLTAR 421          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFP0_9PHAE2.920e-5698.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3Y620_HETAK2.630e-2860.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y614_HETAK6.320e-2860.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FKK9_9STRA4.050e-2759.76Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S1ZBN1_TRICV2.900e-2353.41Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
W7TKW6_9STRA3.000e-2251.76Cytochrome b5 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S2SV73_9STRA1.020e-2150.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K8YSQ2_NANGC4.270e-2155.88Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7S2K3U1_9STRA1.610e-2051.39Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0C0K9_9STRA5.690e-2050.65Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:171625..171942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size318
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350600.7711658-CDS-Ecto-sp6_S_contig98:171624..1719421682350600.7711658-CDS-Ecto-sp6_S_contig98:171624..171942Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 171625..171942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18751.1prot_Ecto-sp6_S_contig98.18751.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 171625..171942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18751.1

>prot_Ecto-sp6_S_contig98.18751.1 ID=prot_Ecto-sp6_S_contig98.18751.1|Name=mRNA_Ecto-sp6_S_contig98.18751.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=106bp
RQFDPPPPAPAAAAAAQPGARLSSDFMRPRASRECPTSSKNSEASAPAFS
ISVSGDPGCRCMKSVMSYRRPCTPTRQLDSKFCPAASHSSQVASNSKKNS
LQPWF*
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mRNA from alignment at Ecto-sp6_S_contig98:171625..171942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18751.1 ID=mRNA_Ecto-sp6_S_contig98.18751.1|Name=mRNA_Ecto-sp6_S_contig98.18751.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=318bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:171625..171942+ (Ectocarpus species6 EcLAC_371)
CGCCAGTTCGACCCCCCTCCTCCGGCACCAGCGGCGGCGGCGGCGGCGCA GCCAGGCGCGAGGCTGTCGAGTGACTTCATGAGGCCGCGGGCGTCGAGGG AGTGCCCGACGTCCTCGAAAAACTCCGAGGCGTCCGCCCCGGCGTTCTCC ATAAGTGTCTCCGGGGACCCCGGGTGTCGGTGCATGAAGTCGGTGATGTC GTACAGGCGGCCGTGCACACCGACCAGGCAGCTCGACTCGAAGTTCTGCC CGGCCGCCAGCCACTCCAGCCAGGTCGCCTCGAACTCGAAAAAGAACTCT CTCCAGCCCTGGTTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:171625..171942+

>mRNA_Ecto-sp6_S_contig98.18751.1 ID=mRNA_Ecto-sp6_S_contig98.18751.1|Name=mRNA_Ecto-sp6_S_contig98.18751.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:171625..171942+ (Ectocarpus species6 EcLAC_371)
CGCCAGTTCGACCCCCCTCCTCCGGCACCAGCGGCGGCGGCGGCGGCGCA
GCCAGGCGCGAGGCTGTCGAGTGACTTCATGAGGCCGCGGGCGTCGAGGG
AGTGCCCGACGTCCTCGAAAAACTCCGAGGCGTCCGCCCCGGCGTTCTCC
ATAAGTGTCTCCGGGGACCCCGGGTGTCGGTGCATGAAGTCGGTGATGTC
GTACAGGCGGCCGTGCACACCGACCAGGCAGCTCGACTCGAAGTTCTGCC
CGGCCGCCAGCCACTCCAGCCAGGTCGCCTCGAACTCGAAAAAGAACTCT
CTCCAGCCCTGGTTTTGA
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